High diversity of small organic N observed in soil water

Soil Biology and Biochemistry

Volumn 57, Issue , 2013, Pages 444-450

  Warren, Charles R ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Amino acid; Organic N; Quaternary ammonium; Soil water; Unbiased profiling

Indexed keywords

AROMATIC AMINO ACID; BIOLOGICAL PROCESS; C CYCLING; CAPILLARY ELECTROPHORESIS-MASS SPECTROMETRIES; CARNITINE; DUAL ROLE; ECTOINE; ELECTROSPRAYS; ETHANOLAMINES; HETEROCYCLIC COMPOUND; NICOTINIC ACID; ORGANIC CATIONS; OSMOLYTES; PIPECOLIC ACID; PLANT ORIGIN; QUATERNARY AMMONIUM; QUATERNARY AMMONIUM COMPOUND; SOIL SOLUTIONS; SOIL WATER; SUB-ALPINE; TRIMETHYLAMINE N OXIDES; UNBIASED PROFILING;

AMINES; AMINO ACIDS; BACTERIA; CAPILLARY ELECTROPHORESIS; CENTRIFUGATION; LAKES; MASS SPECTROMETRY; METHANOL; MOLECULES;

SOIL MOISTURE;

ALPINE ENVIRONMENT; AMINO ACID; AMMONIUM; BIOLOGICAL UPTAKE; CARBON CYCLE; CATION; GRASSLAND; MOLECULAR ANALYSIS; NITROGEN CYCLE; ORGANIC NITROGEN; QUATERNARY; SOIL ORGANIC MATTER; SOIL WATER;

EID: 84870227049     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2012.09.025     Document Type: Article

References (48)

1. Abuarghub S.M., Read D.J. The biology of mycorrhiza in the Ericaceae .12. Quantitative-analysis of individual free amino-acids in relation to time and depth in the soil-profile. New Phytologist 1988, 108:433-441.
2. Andersson P., Berggren D. Amino acids, total organic and inorganic nitrogen in forest floor soil solution at low and high nitrogen input. Water, Air and Soil Pollution 2005, 162:369-384.
3. Audley B.G., Tan C.H. The uptake of ergothioneine from the soil into the latex of Hevea brasiliensis. Phytochemistry 1968, 7:1999-2000.
4. Baidoo E.E.K., et al. Capillary electrophoresis-Fourier transform ion cyclotron resonance mass spectrometry for the identification of cationic metabolites via a pH-mediated stacking-transient isotachophoretic method. Analytical Chemistry 2008, 80:3112-3122.
5. Baran R., et al. MathDAMP: a package for differential analysis of metabolite profiles. BMC Bioinformatics 2006, 7.
6. Bino R.J., et al. Potential of metabolomics as a functional genomics tool. Trends in Plant Science 2004, 9:418-425.
7. Chalcraft K.R., Britz-McKibbin P. Newborn screening of inborn errors of metabolism by capillary electrophoresis-electrospray ionization-mass spectrometry: a second-tier method with improved specificity and sensitivity. Analytical Chemistry 2009, 81:307-314.
8. Chapin F.S., Moilanen L., Kielland K. Preferential use of organic nitrogen for growth by a nonmycorrhizal Arctic sedge. Nature 1993, 361:150-153.
9. Farrell M., Hill P.W., Farrar J., Bardgett R.D., Jones D.L. Seasonal variation in soluble soil carbon and nitrogen across a grassland productivity gradient. Soil Biology & Biochemistry 2011, 43:835-844.
10. Farrell M., Hill P.W., Wanniarachchi S.D., Farrar J., Bardgett R.D., Jones D.L. Rapid peptide metabolism: A major component of soil nitrogen cycling?. Global Biogeochemical Cycles 2011, 25.
11. Harada K., Fukusaki E. Profiling of primary metabolite by means of capillary electrophoresis-mass spectrometry and its application for plant science. Plant Biotechnology 2009, 26:47-52.
12. Hasan M.N., Park S.H., Oh E., Song E.J., Ban E., Yoo Y.S. Sensitivity enhancement of CE and CE-MS for the analysis of peptides by a dynamic pH junction. Journal of Separation Science 2010, 33:3701-3709.
13. Hasegawa P.M., Bressan R.A., Zhu J.K., Bohnert H.J. Plant cellular and molecular responses to high salinity. Annual Review of Plant Physiology and Plant Molecular Biology 2000, 51:463-499.
14. He H.B., Xie H.T., Zhang X.D. A novel GCMS technique to assess N-15 and C-13 incorporation into soil amino sugars. Soil Biology & Biochemistry 2006, 38:1083-1091.
15. Hill P.W., et al. Acquisition and assimilation of nitrogen as peptide-bound and d-enantiomers of amino acids by wheat. Plos One 2011, 6.
16. Horai H., et al. MassBank: a public repository for sharing mass spectral data for life sciences. Journal of Mass Spectrometry 2010, 45:703-714.
17. Inselsbacher E., Ohlund J., Jämtgård S., Huss-Danell K., Näsholm T. The potential of microdialysis to monitor organic and inorganic nitrogen compounds in soil. Soil Biology & Biochemistry 2011, 43:1321-1332.
18. Ivarson K.C., Sowden F.J. Free amino acid composition of the plant root environment under field conditions. Canadian Journal of Soil Science 1969, 49:121-127.
19. Jämtgård S., Näsholm T., Huss-Danell K. Nitrogen compounds in soil solutions of agricultural land. Soil Biology & Biochemistry 2010, 42:2325-2330.
20. Jones D.L., Darrah P.R. Influx and efflux of amino-acids from Zea mays L roots and their implications for N-nutrition and the rhizosphere. Plant and Soil 1993, 156:87-90.
21. Kaspar H., et al. Urinary amino acid analysis: A comparison of iTRAQ (R)-LC-MS/MS, GC-MS, and amino acid analyzer. Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences 2009, 877:1838-1846.
22. Kielland K. Landscape patterns of free amino acids in arctic tundra soils. Biogeochemistry 1995, 31:85-98.
23. Knapp D.R. Handbook of Analytical Derivatization Reactions 1979, John Wiley and Sons, New York.
24. Lippert K., Galinski E.A. Enzyme stabilization by ectoine-type compatible solutes - protection against heating, freezing and drying. Applied Microbiology and Biotechnology 1992, 37:61-65.
25. Lisec J., Schauer N., Kopka J., Willmitzer L., Fernie A.R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 2006, 1:387-396.
26. Oikawa A., Fujita N., Horie R., Saito K., Tawaraya K. Solid-phase extraction for metabolomic analysis of high-salinity samples by capillary electrophoresis-mass spectrometry. Journal of Separation Science 2011, 34:1063-1068.
27. Owen A.G., Jones D.L. Competition for amino acids between wheat roots and rhizosphere microorganisms and the role of amino acids in plant N acquisition. Soil Biology & Biochemistry 2001, 33:651-657.
28. Patti G.J., Yanes O., Siuzdak G. Metabolomics: the apogee of the omics trilogy. Nature Reviews Molecular Cell Biology 2012, 13:263-269.
29. Read D.J., Bajwa R. Some nutritional aspects of the biology of ericaceous mycorrhizas. Proceedings of the Royal Society of Edinburgh 1985, 85B:317-332.
30. Roberts P., Jones D.L. Critical evaluation of methods for determining total protein in soil solution. Soil Biology & Biochemistry 2008, 40:1485-1495.
31. Schimel J., Balser T.C., Wallenstein M. Microbial stress-response physiology and its implications for ecosystem function. Ecology 2007, 88:1386-1394.
32. Schulten H.R., Schnitzer M. The chemistry of soil organic nitrogen: a review. Biology and Fertility of Soils 1997, 26:1-15.
33. Smith C.A., et al. METLIN - a metabolite mass spectral database. Therapeutic Drug Monitoring 2005, 27:747-751.
34. Soga T., Heiger D.N. Amino acid analysis by capillary electrophoresis electrospray ionization mass spectrometry. Analytical Chemistry 2000, 72:1236-1241.
35. Soga T., Ohashi Y., Ueno Y., Naraoka H., Tomita M., Nishioka T. Quantitative metabolome analysis using capillary electrophoresis mass spectrometry. Journal of Proteome Research 2003, 2:488-494.
36. Soper F.M., Paungfoo-Lonhienne C., Brackin R., Rentsch D., Schmidt S., Robinson N. Arabidopsis and Lobelia anceps access small peptides as a nitrogen source for growth. Functional Plant Biology 2011, 38:788-796.
37. Streeter T.C., Bol R., Bardgett R.D. Amino acids as a nitrogen source in temperate upland grasslands: the use of dual labelled (C-13, N-15) glycine to test for direct uptake by dominant grasses. Rapid Communications in Mass Spectrometry 2000, 14:1351-1355.
38. Sugimoto M., Hirayama A., Robert M., Abe S., Soga T., Tomita M. Prediction of metabolite identity from accurate mass, migration time prediction and isotopic pattern information in CE-TOFMS data. Electrophoresis 2010, 31:2311-2318.
39. Tanret C. The new base drawn from rye ergot, ergothioneine. Comptes Rendus Hebdomadaires Des Seances De L Academie Des Sciences 1909, 149:222-224.
40. Toyo'oka, T., 1999. Modern Derivatization Methods for Separation Sciences, England.
41. Turnbull M.H., Schmidt S., Erskine P.D., Richards S., Stewart G.R. Root adaptation and nitrogen source acquisition in natural ecosystems. Tree Physiology 1996, 16:941-948.
42. Warren C.R. Potential organic and inorganic N uptake by six Eucalyptus species. Functional Plant Biology 2006, 33:653-660.
43. Warren C.R. Rapid and sensitive quantification of amino acids in soil extracts by capillary electrophoresis with laser-induced fluorescence. Soil Biology & Biochemistry 2008, 40:916-923.
44. Warren C.R., Taranto M.T. Temporal variation in pools of amino acids, inorganic and microbial N in a temperate grassland soil. Soil Biology & Biochemistry 2010, 42:353-359.
45. Warren C.R., Taranto M.T. Ecosystem respiration in a seasonally snow-covered subalpine grassland. Arctic Antarctic and Alpine Research 2011, 43:137-146.
46. Werdin-Pfisterer N.R., Kielland K., Boone R.D. Soil amino acid composition across a boreal forest successional sequence. Soil Biology & Biochemistry 2009, 41:1210-1220.
47. Wishart D.S., et al. HMDB: the human metabolome database. Nucleic Acids Research 2007, 35:D521-D526.
48. Wood J.M., et al. Osmosensing and osmoregulatory compatible solute accumulation by bacteria. Comparative Biochemistry and Physiology a-Molecular and Integrative Physiology 2001, 130:437-460.