LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator

Plant Cell

Volumn 26, Issue 7, 2014, Pages 2843-2857

  Xie, Qiguang ^a   Wang, Peng ^a   Liu, Xian ^a   Yuan, Li ^a   Wang, Lingbao ^a   Zhang, Chenguang ^a   Li, Yue ^a   Xing, Hongya ^a   Zhi, Liya ^a   Yue, Zhiliang ^a   Zhao, Chunsheng ^a   McClung, C Robertson ^b   Xu, Xiaodong ^a  

^a HEBEI NORMAL UNIVERSITY   (China)

^b Dartmouth College   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; LNK1 PROTEIN, ARABIDOPSIS; LNK2 PROTEIN, ARABIDOPSIS; PRR5 PROTEIN, ARABIDOPSIS; TOC1 PROTEIN, ARABIDOPSIS; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR;

ARABIDOPSIS; BIOLOGICAL MODEL; CHROMATIN IMMUNOPRECIPITATION; CIRCADIAN RHYTHM; FLOWER; GENE EXPRESSION REGULATION; GENETICS; LIGHT; METABOLISM; MUTATION; PHYSIOLOGY; PROMOTER REGION; RADIATION RESPONSE; REPORTER GENE;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMATIN IMMUNOPRECIPITATION; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENES, REPORTER; LIGHT; MODELS, GENETIC; MUTATION; PROMOTER REGIONS, GENETIC; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 84907351550     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.114.126573     Document Type: Article

References (62)

1. Aguilar-Arnal, L., and Sassone-Corsi, P. (2013). The circadian epigenome: How metabolism talks to chromatin remodeling. Curr. Opin. Cell Biol. 25: 170-176.
2. Anderson, S.L., Teakle, G.R., Martino-Catt, S.J., and Kay, S.A. (1994). Circadian clock-and phytochrome-regulated transcription is conferred by a 78 bp cis-acting domain of the Arabidopsis CAB2 promoter. Plant J. 6: 457-470.
3. Carré, I.A., and Kim, J.-Y. (2002). MYB transcription factors in the Arabidopsis circadian clock. J. Exp. Bot. 53: 1551-1557.
4. Chen, H., Zou, Y., Shang, Y., Lin, H., Wang, Y., Cai, R., Tang, X., and Zhou, J.M. (2008). Firefly luciferase complementation imaging assay for protein-protein interactions in plants. Plant Physiol. 146: 368-376.
5. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
6. Curtis, M.D., and Grossniklaus, U. (2003). A Gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469.
7. Dodd, A.N., Salathia, N., Hall, A., Kévei, E., Tóth, R., Nagy, F., Hibberd, J.M., Millar, A.J., and Webb, A.A.R. (2005). Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science 309: 630-633.
8. Doi, M., Hirayama, J., and Sassone-Corsi, P. (2006). Circadian regulator CLOCK is a histone acetyltransferase. Cell 125: 497-508.
9. Dunlap, J.C. (1999). Molecular bases for circadian clocks. Cell 96: 271-290.
10. Farinas, B., and Mas, P. (2011). Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation. Plant J. 66: 318-329.
11. Farré, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and Kay, S.A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15: 47-54.
12. Fujiwara, S., Wang, L., Han, L., Suh, S.S., Salomé, P.A., McClung, C.R., and Somers, D.E. (2008). Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins. J. Biol. Chem. 283: 23073-23083.
13. Gendron, J.M., Pruneda-Paz, J.L., Doherty, C.J., Gross, A.M., Kang, S.E., and Kay, S.A. (2012). Arabidopsis circadian clock protein, TOC1, is a DNAbinding transcription factor. Proc. Natl. Acad. Sci. USA 109: 3167-3172.
14. Graf, A., and Smith, A.M. (2011). Starch and the clock: the dark side of plant productivity. Trends Plant Sci. 16: 169-175.
15. Harmer, S.L., and Kay, S.A. (2005). Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940.
16. Harmer, S.L., Hogenesch, J.B., Straume, M., Chang, H.S., Han, B., Zhu, T., Wang, X., Kreps, J.A., and Kay, S.A. (2000). Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290: 2110-2113.
17. Helfer, A., Nusinow, D.A., Chow, B.Y., Gehrke, A.R., Bulyk, M.L., and Kay, S.A. (2011). LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr. Biol. 21: 126-133.
18. Hemmes, H., Henriques, R., Jang, I.-C., Kim, S., and Chua, N.-H. (2012). Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms. Plant Cell Physiol. 53: 2016-2029.
19. Henriques, R., and Mas, P. (2013). Chromatin remodeling and alternative splicing: Pre-and post-transcriptional regulation of the Arabidopsis circadian clock. Semin. Cell Dev. Biol. 24: 399-406.
20. Herrero, E., et al. (2012). EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock. Plant Cell 24: 428-443.
21. Hsu, P.Y., and Harmer, S.L. (2014). Wheels within wheels: the plant circadian system. Trends Plant Sci. 19: 240-249.
22. Hsu, P.Y., Devisetty, U.K., and Harmer, S.L. (2013). Accurate timekeeping is controlled by a cycling activator in Arabidopsis. eLife 2: e00473.
23. Huang, W., Pérez-García, P., Pokhilko, A., Millar, A.J., Antoshechkin, I., Riechmann, J.L., andMas, P. (2012). Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science 336: 75-79.
24. Huq, E., Al-Sady, B., Hudson, M., Kim, C., Apel, K., and Quail, P.H. (2004). Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science 305: 1937-1941.
25. James, A.B., Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P., Jenkins, G.I., and Nimmo, H.G. (2008). The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science 322: 1832-1835.
26. Jefferson, R.A., Kavanagh, T.A., and Bevan, M.W. (1987). GUS fusions: β-Glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
27. Karimi, M., Inzé, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195.
28. Kim, Y., Lim, J., Yeom, M., Kim, H., Kim, J., Wang, L., Kim, W.Y., Somers, D.E., and Nam, H.G. (2013). ELF4 regulates GIGANTEA chromatin access through subnuclear sequestration. Cell Reports 3: 671-677.
29. Koike, N., Yoo, S.H., Huang, H.C., Kumar, V., Lee, C., Kim, T.K., and Takahashi, J.S. (2012). Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 338: 349-354.
30. Lau, O.S., Huang, X., Charron, J.-B., Lee, J.-H., Li, G., and Deng, X.W. (2011). Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock. Mol. Cell 43: 703-712.
31. Li, G., et al. (2011). Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nat. Cell Biol. 13: 616-622.
32. Li, Z., Peng, J., Wen, X., and Guo, H. (2013). Ethylene-insensitive3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis. Plant Cell 25: 3311-3328.
33. Malapeira, J., Khaitova, L.C., and Mas, P. (2012). Ordered changes in histone modifications at the core of the Arabidopsis circadian clock. Proc. Natl. Acad. Sci. USA 109: 21540-21545.
34. McClung, C.R. (2014). Wheels within wheels: New transcriptional feedback loops in the Arabidopsis circadian clock. F1000Prime Rep. 6: 2.
35. Menet, J.S., Pescatore, S., and Rosbash, M. (2014). CLOCK:BMAL1 is a pioneer-like transcription factor. Genes Dev. 28: 8-13.
36. Mizoi, J., Nakamura, M., and Nishida, I. (2006). Defects in CTP: PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE affect embryonic and postembryonic development in Arabidopsis. Plant Cell 18: 3370-3385.
37. Mohawk, J.A., Green, C.B., and Takahashi, J.S. (2012). Central and peripheral circadian clocks in mammals. Annu. Rev. Neurosci. 35: 445-462.
38. Murashige, T.R., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant. 15: 473-497.
39. Nakamichi, N., Kiba, T., Henriques, R., Mizuno, T., Chua, N.-H., and Sakakibara, H. (2010). PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell 22: 594-605.
40. Nusinow, D.A., Helfer, A., Hamilton, E.E., King, J.J., Imaizumi, T., Schultz, T.F., Farré, E.M., and Kay, S.A. (2011). The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475: 398-402.
41. Papdi, C., Abrahám, E., Joseph, M.P., Popescu, C., Koncz, C., and Szabados, L. (2008). Functional identification of Arabidopsis stress regulatory genes using the controlled cDNA overexpression system. Plant Physiol. 147: 528-542.
42. Plautz, J.D., Straume, M., Stanewsky, R., Jamison, C.F., Brandes, C., Dowse, H.B., Hall, J.C., and Kay, S.A. (1997). Quantitative analysis of Drosophila period gene transcription in living animals. J. Biol. Rhythms 12: 204-217.
43. Pokhilko, A., Fernández, A.P., Edwards, K.D., Southern, M.M., Halliday, K.J., and Millar, A.J. (2012). The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Mol. Syst. Biol. 8: 574.
44. Portolés, S., and Más, P. (2010). The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis. PLoS Genet. 6: e1001201.
45. Pruneda-Paz, J.L., Breton, G., Para, A., and Kay, S.A. (2009). A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 323: 1481-1485.
46. Rawat, R., Takahashi, N., Hsu, P.Y., Jones, M.A., Schwartz, J., Salemi, M.R., Phinney, B.S., and Harmer, S.L. (2011). REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock. PLoS Genet. 7: e1001350.
47. Rugnone, M.L., Faigón Soverna, A., Sanchez, S.E., Schlaen, R.G., Hernando, C.E., Seymour, D.K., Mancini, E., Chernomoretz, A., Weigel, D., Más, P., and Yanovsky, M.J. (2013). LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proc. Natl. Acad. Sci. USA 110: 12120-12125.
48. Sadowski, I., Ma, J., Triezenberg, S., and Ptashne, M. (1988). GAL4-VP16 is an unusually potent transcriptional activator. Nature 335: 563-564.
49. Salomé, P.A., and McClung, C.R. (2005a). What makes the Arabidopsis clock tick on time? A review on entrainment. Plant Cell Environ. 28: 21-38.
50. Salomé, P.A., and McClung, C.R. (2005b). PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock. Plant Cell 17: 791-803.
51. Seo, P.J., Park, M.-J., Lim, M.-H., Kim, S.-G., Lee, M., Baldwin, I.T., and Park, C.-M. (2012). A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell 24: 2427-2442.
52. Song, H.-R., and Noh, Y.-S. (2012). Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci. Mol. Cells 34: 279-287.
53. Southern, M.M., and Millar, A.J. (2005). Circadian genetics in the model higher plant, Arabidopsis thaliana. Methods Enzymol. 393: 23-35.
54. Walter, M., Chaban, C., Schütze, K., Batistic, O., Weckermann, K., Näke, C., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K., and Kudla, J. (2004). Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40: 428-438.
55. Wang, L., Fujiwara, S., and Somers, D.E. (2010). PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock. EMBO J. 29: 1903-1915.
56. Wang, L., Kim, J., and Somers, D.E. (2013). Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription. Proc. Natl. Acad. Sci. USA 110: 761-766.
57. Wang, X., et al. (2012). SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell 24: 3278-3295.
58. Wang, Y., Wu, J.-F., Nakamichi, N., Sakakibara, H., Nam, H.-G., and Wu, S.-H. (2011). LIGHT-REGULATED WD1 and PSEUDORESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock. Plant Cell 23: 486-498.
59. Wu, J.-F., Wang, Y., and Wu, S.-H. (2008). Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering. Plant Physiol. 148: 948-959.
60. Yoo, S.-D., Cho, Y.-H., and Sheen, J. (2007). Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis. Nat. Protoc. 2: 1565-1572.
61. Yu, J.-W., et al. (2008). COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol. Cell 32: 617-630.
62. Zhang, E.E., and Kay, S.A. (2010). Clocks not winding down: Unravelling circadian networks. Nat. Rev. Mol. Cell Biol. 11: 764-776.