Characterization of genomic single nucleotide polymorphism via colorimetric detection using a single gold nanoprobe

Analytical Biochemistry

Volumn 465, Issue 1, 2014, Pages 1-5

  Carlos, Fábio Ferreira ^a,b   Flores, Orfeu ^b   Doria, Gonçalo ^a   Baptista, Pedro Viana ^a  

^a UNIVERSIDADE NOVA DE LISBOA   (Portugal)

^b Madan Parque   (Portugal)

Author keywords

FTO gene; Genotyping; Gold nanoparticles; Nanodiagnostics; Non cross linking method; Point of care

Indexed keywords

DNA SEQUENCES; FIBER OPTIC SENSORS; GENE ENCODING; GOLD COMPOUNDS; GOLD NANOPARTICLES; METAL NANOPARTICLES; NANOPROBES; OLIGONUCLEOTIDES; POLYMORPHISM;

COLORIMETRIC DETECTION; GENOTYPING; LIMIT OF DETECTION; MOLECULAR DIAGNOSTICS; NANODIAGNOSTICS; POINT OF CARE; SINGLE-NUCLEOTIDE POLYMORPHISMS; STATISTICAL DIFFERENCES;

ANALYSIS OF VARIANCE (ANOVA);

GENOMIC DNA; GOLD NANOPARTICLE; OLIGONUCLEOTIDE; DNA PROBE; FTO PROTEIN, HUMAN; GOLD; METAL NANOPARTICLE; PROTEIN;

ARTICLE; COLORIMETRY; COMPARATIVE STUDY; CROSS LINKING; DNA SEQUENCE; GENOTYPE; GOLD NANOPROBE; HETEROZYGOTE; HUMAN; LIMIT OF DETECTION; MOLECULAR DIAGNOSTICS; NANOPROBE; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; ULTRAVIOLET RADIATION; WILD TYPE; CHEMISTRY; DNA PROBE; FEMALE; GENETICS; GENOTYPING TECHNIQUE; MALE; PROCEDURES; VALIDATION STUDY;

COLORIMETRY; DNA PROBES; FEMALE; GENOTYPING TECHNIQUES; GOLD; HUMANS; MALE; METAL NANOPARTICLES; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEINS;

EID: 84907285737     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2014.07.019     Document Type: Article

References (21)

1. World Health Organization, Obesity: Preventing and Managing the Global Epidemic, Report of a WHO Consultation (Technical Report Series 894), World Health Organization, Geneva, Switzerland, 2000.
2. T.M. Frayling, N.J. Timpson, M.N. Weedon, E. Zeggini, R.M. Freathy, C.M. Lindgren, J.R. Perry, K.S. Elliott, H. Lango, N.W. Rayner, et al., A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity, Science 316 (2007) 889-894.
3. J.L. González-Sánchez, C. Zabena, M.T. Martínez-Larrad, M.J. Martínez-Calatrava, M. Pérez-Barba, M. Serrano-Ríos, Variant rs9939609 in the FTO gene is associated with obesity in an adult population from Spain, Clin. Endocrinol. (Oxf) 70 (2009) 390-393.
4. E. Zimmermann, K. Skogstrand, D.M. Hougaard, A. Astrup, T. Hansen, O. Pedersen, T.I. Sørensen, T. Jess, Influences of the common FTO rs9939609 variant on inflammatory markers throughout a broad range of body mass index, PLoS ONE 6 (2011) e15958.
5. F.F. Carlos, J. Silva-Nunes, O. Flores, M. Brito, G. Doria, L. Veiga, P.V. Baptista, Association of FTO and PPARG polymorphisms with obesity in Portuguese women, Diabetes Metab. Syndr. Obes. 11 (2013) 241-245.
6. D. Albuquerque, C. Nóbrega, L. Manco, Association of FTO polymorphisms with obesity and obesity-related outcomes in Portuguese children, PLoS ONE 8 (2013) e54370.
7. J. Wang, W. Wang, Y. Liu, L. Duo, L. Huang, X. Jiang, The method of singlenucleotide variations detection using capillary electrophoresis and molecular beacons, Mol. Biol. Rep. 36 (2009) 1903-1908.
8. I. Cascorbi, T. Gerloff, A. Johne, C. Meisel, S. Hoffmeyer, M. Schwab, E. Schaeffeler, Frequency of single nucleotide polymorphisms in the Pglycoprotein drug transporter MDR1 gene in white subjects, Clin. Pharmacol. Ther. 69 (2001) 169-174.
9. M.N. Darawi, C. Ai-Vyrn, K. Ramasamy, P.P. Hua, T.M. Pin, S.B. Kamaruzzaman, Allele-specific polymerase chain reaction for the detection of Alzheimer's disease-related single nucleotide polymorphisms, BMC Med. Genet. 19 (2013) 14-27.
10. C. Zhang, Y. Liu, B.Z. Ring, K. Nie, M. Yang, M. Wang, A novel multiplex tetraprimer ARMS-PCR for the simultaneous genotyping of six single nucleotide polymorphisms associated with female cancers, PLoS ONE 8 (2013) e62126.
11. K. Sato, K. Hosokawa, M. Maeda, Rapid aggregation of gold nanoparticles induced by non-cross-linking DNA hybridization, J. Am. Chem. Soc. 125 (2003) 8102-8103.
12. C.S. Thaxton, D.G. Georganopoulou, C.A. Mirkin, Gold nanoparticle probes for the detection of nucleic acid targets, Clin. Chim. Acta 363 (2006) 120-126.
13. P. Baptista, E. Pereira, P. Eaton, G. Doria, A. Miranda, I. Gomes, P. Quaresma, R. Franco, Gold nanoparticles for the development of clinical diagnosis methods, Anal. Bioanal. Chem. 391 (2008) 943-950.
14. G. Doria, R. Franco, P. Baptista, Nanodiagnostics: Fast colorimetric method for single nucleotide polymorphism/mutation detection, IET Nanobiotechnol. 1 (2007) 53-57.
15. E. Liandris, M. Gazouli, M. Andreadou, M. Comor, N. Abazovic, L.A. Sechi, J. Ikonomopoulos, Direct detection of unamplified DNA from pathogenic mycobacteria using DNA-derivatized gold nanoparticles, J. Microbiol. Methods 78 (2009) 260-264.
16. P.C. Lee, D. Meisel, Adsorption and surface-enhanced Raman of dyes on silver and gold sols, J. Phys. Chem. 86 (1982) 3391-3395.
17. B. Veigas, D. Machado, J. Perdigão, I. Portugal, I. Couto, M. Viveiros, P.V. Baptista, Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis, Nanotechnology 21 (2010) 415101.
18. B. Veigas, P. Pedrosa, I. Couto, M. Viveiros, P.V. Baptista, Isothermal DNA amplification coupled to Au-nanoprobes for detection of mutations associated to Rifampicin resistance in Mycobacterium tuberculosis, J. Nanobiotechnol. 25 (2013) 11-38.
19. G. Doria, B.G. Baumgartner, R. Franco, P.V. Baptista, Optimizing Au- Nanoprobes for specific sequence discrimination, Colloids Surf. B 77 (2010) 122-124.
20. M. Andreadou, E. Liandris, M. Gazouli, S. Taka, M. Antoniou, G. Theodoropoulos, A novel non-amplification assay for the detection of Leishmania spp. in clinical samples using gold nanoparticles, J. Microbiol. Methods 95 (2014) 56-61.
21. L.B. Silva, B. Veigas, G. Doria, P. Costa, J. Inácio, R. Martins, E. Fortunato, P.V. Baptista, Portable optoelectronic biosensing platform for identification of mycobacteria from the Mycobacterium tuberculosis complex, Biosens. Bioelectron. 26 (2011) 2012-2017.