-
1
-
-
33750027444
-
Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status
-
Li Y, Raftis E, Canchaya C, Fitzgerald GF, Sinderen DV, O'Toole PW. Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status. Int J of Syst Evol Microbiol 2006, 56:2397-2403.
-
(2006)
Int J of Syst Evol Microbiol
, vol.56
, pp. 2397-2403
-
-
Li, Y.1
Raftis, E.2
Canchaya, C.3
Fitzgerald, G.F.4
Sinderen, D.V.5
O'Toole, P.W.6
-
2
-
-
0035156787
-
The Lactobacillus and Bifidobacterium microflora of the human intestine: composition and succession
-
Reuter G. The Lactobacillus and Bifidobacterium microflora of the human intestine: composition and succession. Curr Issues Intest Microbiol 2001, 2(2):43-53.
-
(2001)
Curr Issues Intest Microbiol
, vol.2
, Issue.2
, pp. 43-53
-
-
Reuter, G.1
-
3
-
-
0014508147
-
Vergleichende untersuchungen U¨ber die Laktobazillen aus den faeces von menschen, schweinen und hU¨hnern
-
Mitsuoka T. Vergleichende untersuchungen U¨ber die Laktobazillen aus den faeces von menschen, schweinen und hU¨hnern. Bakteriol 1969, 210:32-51.
-
(1969)
Bakteriol
, vol.210
, pp. 32-51
-
-
Mitsuoka, T.1
-
4
-
-
33749253341
-
Lactobacillus salivarius CECT 5713, a potential probiotic strain isolated from infant feces and breast milk of a mother-child pair
-
16843562
-
Marti´n R, Jime´nez E, Olivares M, Mari´n ML, Ferna´ndez L, Xaus J, Rodri´guez JM. Lactobacillus salivarius CECT 5713, a potential probiotic strain isolated from infant feces and breast milk of a mother-child pair. Int J Food Microbiol 2006, 112(1):35-43. 10.1016/j.ijfoodmicro.2006.06.011, 16843562.
-
(2006)
Int J Food Microbiol
, vol.112
, Issue.1
, pp. 35-43
-
-
Marti´n, R.1
Jime´nez, E.2
Olivares, M.3
Mari´n, M.L.4
Ferna´ndez, L.5
Xaus, J.6
Rodri´guez, J.M.7
-
5
-
-
77952391420
-
Probiotic properties of Lactobacillus salivarius and closely related Lactobacillus species
-
20441548
-
Neville BA, O'Toole PW. Probiotic properties of Lactobacillus salivarius and closely related Lactobacillus species. Future Microbiol 2010, 5(5):759-774. 10.2217/fmb.10.35, 20441548.
-
(2010)
Future Microbiol
, vol.5
, Issue.5
, pp. 759-774
-
-
Neville, B.A.1
O'Toole, P.W.2
-
6
-
-
41149163820
-
Strain-specific inhibition of Helicobacter pylori by Lactobacillus salivarius and other lactobacilli
-
18263567
-
Ryan KA, Daly P, Li Y, Hooton C, O'Toole PW. Strain-specific inhibition of Helicobacter pylori by Lactobacillus salivarius and other lactobacilli. J Antimicrob Chemother 2008, 61(4):831-834. 10.1093/jac/dkn040, 18263567.
-
(2008)
J Antimicrob Chemother
, vol.61
, Issue.4
, pp. 831-834
-
-
Ryan, K.A.1
Daly, P.2
Li, Y.3
Hooton, C.4
O'Toole, P.W.5
-
7
-
-
79551498299
-
Genomic diversity of Lactobacillus salivarius
-
3028724, 21131523
-
Raftis EJ, Salvetti E, Torriani S, Felis GE, O'Toole PW. Genomic diversity of Lactobacillus salivarius. Appl Environ Microbiol 2011, 77(3):954-965. 10.1128/AEM.01687-10, 3028724, 21131523.
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.3
, pp. 954-965
-
-
Raftis, E.J.1
Salvetti, E.2
Torriani, S.3
Felis, G.E.4
O'Toole, P.W.5
-
8
-
-
0036230805
-
Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118
-
Flynn S, van Sinderen D, Thornton GM, Holo H, Nes IF, Collins JK. Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology 2002, 148(4):973-984.
-
(2002)
Microbiology
, vol.148
, Issue.4
, pp. 973-984
-
-
Flynn, S.1
van Sinderen, D.2
Thornton, G.M.3
Holo, H.4
Nes, I.F.5
Collins, J.K.6
-
9
-
-
33646232504
-
Multireplicon genome architecture of Lactobacillus salivarius
-
1436024, 16617113
-
Claesson MJ, Li Y, Leahy S, Canchaya C, van Pijkeren JP, Cerdeño-Ta´rraga AM, Parkhill J, Flynn S, O'Sullivan GC, Collins JK, Higgins D, Shanahan F, Fitzgerald GF, van Sinderen D, O'Toole PW. Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci 2006, 103(17):6718-6723. 10.1073/pnas.0511060103, 1436024, 16617113.
-
(2006)
Proc Natl Acad Sci
, vol.103
, Issue.17
, pp. 6718-6723
-
-
Claesson, M.J.1
Li, Y.2
Leahy, S.3
Canchaya, C.4
van Pijkeren, J.P.5
Cerdeño-Ta´rraga, A.M.6
Parkhill, J.7
Flynn, S.8
O'Sullivan, G.C.9
Collins, J.K.10
Higgins, D.11
Shanahan, F.12
Fitzgerald, G.F.13
van Sinderen, D.14
O'Toole, P.W.15
-
10
-
-
34250622074
-
Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118
-
1863472, 17456596
-
Corr SC, Li Y, Riedel CU, O'Toole PW, Hill C, Gahan CGM. Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118. Proc Natl Acad Sci 2007, 104(18):7617-7621. 10.1073/pnas.0700440104, 1863472, 17456596.
-
(2007)
Proc Natl Acad Sci
, vol.104
, Issue.18
, pp. 7617-7621
-
-
Corr, S.C.1
Li, Y.2
Riedel, C.U.3
O'Toole, P.W.4
Hill, C.5
Gahan, C.G.M.6
-
11
-
-
69949083658
-
Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels
-
2737978, 19592587
-
Fang F, Li Y, Bumann M, Raftis EJ, Casey PG, Cooney JC, Walsh MA, O'Toole PW. Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels. J Bact 2009, 191(18):5743-5757. 10.1128/JB.00506-09, 2737978, 19592587.
-
(2009)
J Bact
, vol.191
, Issue.18
, pp. 5743-5757
-
-
Fang, F.1
Li, Y.2
Bumann, M.3
Raftis, E.J.4
Casey, P.G.5
Cooney, J.C.6
Walsh, M.A.7
O'Toole, P.W.8
-
12
-
-
34548486020
-
Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli
-
1951925, 17586640
-
Li Y, Canchaya C, Fang F, Raftis E, Ryan KA, van Pijkeren J-P, van Sinderen D, O'Toole PW. Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli. J Bacteriol 2007, 189(17):6128-6139. 10.1128/JB.00447-07, 1951925, 17586640.
-
(2007)
J Bacteriol
, vol.189
, Issue.17
, pp. 6128-6139
-
-
Li, Y.1
Canchaya, C.2
Fang, F.3
Raftis, E.4
Ryan, K.A.5
van Pijkeren, J.-P.6
van Sinderen, D.7
O'Toole, P.W.8
-
13
-
-
33745134051
-
Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118
-
1489637, 16751526
-
van Pijkeren J, Canchaya C, Ryan K, Li Y, Claesson M, Sheil B, Steidler L, O'Mahony L, Fitzgerald G, van Sinderen D. Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol 2006, 72(6):4143-4153. 10.1128/AEM.03023-05, 1489637, 16751526.
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.6
, pp. 4143-4153
-
-
van Pijkeren, J.1
Canchaya, C.2
Ryan, K.3
Li, Y.4
Claesson, M.5
Sheil, B.6
Steidler, L.7
O'Mahony, L.8
Fitzgerald, G.9
van Sinderen, D.10
-
14
-
-
77957348898
-
Complete genome sequence of Lactobacillus salivarius CECT 5713, a probiotic strain isolated from human milk and infant feces
-
2944511, 20675488
-
Jimenez E, Martin R, Maldonado A, Martin V, Gomez de Segura A, Fernandez L, Rodriguez JM. Complete genome sequence of Lactobacillus salivarius CECT 5713, a probiotic strain isolated from human milk and infant feces. J Bacteriol 2010, 192(19):5266-5267. 10.1128/JB.00703-10, 2944511, 20675488.
-
(2010)
J Bacteriol
, vol.192
, Issue.19
, pp. 5266-5267
-
-
Jimenez, E.1
Martin, R.2
Maldonado, A.3
Martin, V.4
Gomez de Segura, A.5
Fernandez, L.6
Rodriguez, J.M.7
-
15
-
-
80053585098
-
Genome sequence of Lactobacillus salivarius NIAS840, isolated from chicken intestine
-
3187431, 21914873
-
Ham J-S, Kim H-W, Seol K-H, Jang A, Jeong S-G, Oh M-H, Kim D-H, Kang D-K, Kim G-B, Cha C-J. Genome sequence of Lactobacillus salivarius NIAS840, isolated from chicken intestine. J Bacteriol 2011, 193(19):5551-5552. 10.1128/JB.05688-11, 3187431, 21914873.
-
(2011)
J Bacteriol
, vol.193
, Issue.19
, pp. 5551-5552
-
-
Ham, J.-S.1
Kim, H.-W.2
Seol, K.-H.3
Jang, A.4
Jeong, S.-G.5
Oh, M.-H.6
Kim, D.-H.7
Kang, D.-K.8
Kim, G.-B.9
Cha, C.-J.10
-
16
-
-
84864020948
-
Genome Sequence of Lactobacillus salivarius SMXD51, a Potential Probiotic Strain Isolated from Chicken Cecum, Showing Anti-Campylobacter Activity
-
3370615, 22582370
-
Kergourlay G, Messaoudi S, Dousset X, Pre´vost H. Genome Sequence of Lactobacillus salivarius SMXD51, a Potential Probiotic Strain Isolated from Chicken Cecum, Showing Anti-Campylobacter Activity. J Bacteriol 2012, 194(11):3008-3009. 10.1128/JB.00344-12, 3370615, 22582370.
-
(2012)
J Bacteriol
, vol.194
, Issue.11
, pp. 3008-3009
-
-
Kergourlay, G.1
Messaoudi, S.2
Dousset, X.3
Pre´vost, H.4
-
17
-
-
80052547905
-
Genome sequence of Lactobacillus salivarius GJ-24, a probiotic strain isolated from healthy adult intestine
-
3165680, 21742893
-
Cho Y-J, Choi JK, Kim J-H, Lim Y-S, Ham J-S, Kang D-K, Chun J, Paik H-D, Kim G-B. Genome sequence of Lactobacillus salivarius GJ-24, a probiotic strain isolated from healthy adult intestine. J Bacteriol 2011, 193(18):5021-5022. 10.1128/JB.05616-11, 3165680, 21742893.
-
(2011)
J Bacteriol
, vol.193
, Issue.18
, pp. 5021-5022
-
-
Cho, Y.-J.1
Choi, J.K.2
Kim, J.-H.3
Lim, Y.-S.4
Ham, J.-S.5
Kang, D.-K.6
Chun, J.7
Paik, H.-D.8
Kim, G.-B.9
-
18
-
-
84999018452
-
Draft Genome Sequence of a Novel Lactobacillus salivarius Strain Isolated from Piglet
-
MacKenzie DA, McLay K, Roos S, Walter J, Swarbreck D, Drou N, Crossman LC, Juge N. Draft Genome Sequence of a Novel Lactobacillus salivarius Strain Isolated from Piglet. Genome Announcements 2014, 2:1.
-
(2014)
Genome Announcements
, vol.2
, pp. 1
-
-
MacKenzie, D.A.1
McLay, K.2
Roos, S.3
Walter, J.4
Swarbreck, D.5
Drou, N.6
Crossman, L.C.7
Juge, N.8
-
19
-
-
14044270156
-
Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate
-
15699198
-
Overhage J, Sielker S, Homburg S, Parschat K, Fetzner S. Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate. Microbiology 2005, 151(2):491-500. 10.1099/mic.0.27521-0, 15699198.
-
(2005)
Microbiology
, vol.151
, Issue.2
, pp. 491-500
-
-
Overhage, J.1
Sielker, S.2
Homburg, S.3
Parschat, K.4
Fetzner, S.5
-
20
-
-
79251638546
-
Giant linear plasmids in Streptomyces: a treasure trove of antibiotic biosynthetic clusters
-
21139625
-
Kinashi H. Giant linear plasmids in Streptomyces: a treasure trove of antibiotic biosynthetic clusters. J Antibiot 2011, 64(1):19-25. 10.1038/ja.2010.146, 21139625.
-
(2011)
J Antibiot
, vol.64
, Issue.1
, pp. 19-25
-
-
Kinashi, H.1
-
21
-
-
45449109970
-
Streptomyces; linear plasmids: their discovery, functions, interactions with other replicons, and evolutionary significance
-
Heidelberg: Springer Berlin, Meinhardt F, Klassen R
-
Chater K, Kinashi H. Streptomyces; linear plasmids: their discovery, functions, interactions with other replicons, and evolutionary significance. Microbial Linear Plasmids, Volume 7 2007, 1-31. Heidelberg: Springer Berlin, Meinhardt F, Klassen R.
-
(2007)
Microbial Linear Plasmids, Volume 7
, pp. 1-31
-
-
Chater, K.1
Kinashi, H.2
-
22
-
-
77149164609
-
Streptomyces; linear plasmids: replication and telomeres
-
Springer Berlin: Heidelberg, Meinhardt F, Klassen R
-
Chen C. Streptomyces; linear plasmids: replication and telomeres. Microbial Linear Plasmids, Volume 7 2007, 33-61. Springer Berlin: Heidelberg, Meinhardt F, Klassen R.
-
(2007)
Microbial Linear Plasmids, Volume 7
, pp. 33-61
-
-
Chen, C.1
-
23
-
-
0023663587
-
Linear plasmids of the bacterium Borrelia burgdorferi have covalently closed ends
-
3603026
-
Barbour A, Garon C. Linear plasmids of the bacterium Borrelia burgdorferi have covalently closed ends. Science 1987, 237(4813):409-411. 10.1126/science.3603026, 3603026.
-
(1987)
Science
, vol.237
, Issue.4813
, pp. 409-411
-
-
Barbour, A.1
Garon, C.2
-
24
-
-
0345687907
-
The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which Is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state
-
262720, 14617663
-
Stromsten NJ, Benson SD, Burnett RM, Bamford DH, Bamford JKH. The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which Is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state. J Bacteriol 2003, 185(23):6985-6989. 10.1128/JB.185.23.6985-6989.2003, 262720, 14617663.
-
(2003)
J Bacteriol
, vol.185
, Issue.23
, pp. 6985-6989
-
-
Stromsten, N.J.1
Benson, S.D.2
Burnett, R.M.3
Bamford, D.H.4
Bamford, J.K.H.5
-
25
-
-
79551484126
-
N15: The linear phage-plasmid
-
21185326
-
Ravin NV. N15: The linear phage-plasmid. Plasmid 2011, 65(2):102-109. 10.1016/j.plasmid.2010.12.004, 21185326.
-
(2011)
Plasmid
, vol.65
, Issue.2
, pp. 102-109
-
-
Ravin, N.V.1
-
26
-
-
0037849863
-
PY54, a linear plasmid prophage of Yersinia enterocolitica with covalently closed ends
-
12753191
-
Hertwig S, Klein I, Lurz R, Lanka E, Appel B. PY54, a linear plasmid prophage of Yersinia enterocolitica with covalently closed ends. Mol Microbiol 2003, 48(4):989-1003. 10.1046/j.1365-2958.2003.03458.x, 12753191.
-
(2003)
Mol Microbiol
, vol.48
, Issue.4
, pp. 989-1003
-
-
Hertwig, S.1
Klein, I.2
Lurz, R.3
Lanka, E.4
Appel, B.5
-
27
-
-
1442321281
-
The pKO2 linear plasmid prophage of Klebsiella oxytoca
-
355964, 14996813
-
Casjens SR, Gilcrease EB, Huang WM, Bunny KL, Pedulla ML, Ford ME, Houtz JM, Hatfull GF, Hendrix RW. The pKO2 linear plasmid prophage of Klebsiella oxytoca. J Bacteriol 2004, 186(6):1818-1832. 10.1128/JB.186.6.1818-1832.2004, 355964, 14996813.
-
(2004)
J Bacteriol
, vol.186
, Issue.6
, pp. 1818-1832
-
-
Casjens, S.R.1
Gilcrease, E.B.2
Huang, W.M.3
Bunny, K.L.4
Pedulla, M.L.5
Ford, M.E.6
Houtz, J.M.7
Hatfull, G.F.8
Hendrix, R.W.9
-
28
-
-
70349783610
-
Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain
-
19712732
-
Alemayehu D, Ross RP, O'Sullivan O, Coffey A, Stanton C, Fitzgerald GF, McAuliffe O. Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain. Gene 2009, 448(1):29-39. 10.1016/j.gene.2009.08.008, 19712732.
-
(2009)
Gene
, vol.448
, Issue.1
, pp. 29-39
-
-
Alemayehu, D.1
Ross, R.P.2
O'Sullivan, O.3
Coffey, A.4
Stanton, C.5
Fitzgerald, G.F.6
McAuliffe, O.7
-
29
-
-
0027156201
-
Strain characterization, genome size and plasmid content in the Lactobacillus acidophilus group (Hansen and Mocquot)
-
Roussel Y, Colmin C, Simonet JM, Decaris B. Strain characterization, genome size and plasmid content in the Lactobacillus acidophilus group (Hansen and Mocquot). J Appl Bacteriol 1993, 74:549-556.
-
(1993)
J Appl Bacteriol
, vol.74
, pp. 549-556
-
-
Roussel, Y.1
Colmin, C.2
Simonet, J.M.3
Decaris, B.4
-
30
-
-
0019415205
-
Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of conjugal transfer in the absence of a conjugative plasmid
-
217299, 6257641
-
Franke AE, Clewell DB. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of conjugal transfer in the absence of a conjugative plasmid. J Bacteriol 1981, 145(1):494-502. 217299, 6257641.
-
(1981)
J Bacteriol
, vol.145
, Issue.1
, pp. 494-502
-
-
Franke, A.E.1
Clewell, D.B.2
-
31
-
-
0029046947
-
Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons
-
7648031
-
Clewell DB, Flannagan SE, Jaworski DD. Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons. Trends Microbiol 1995, 3(6):229-236. 10.1016/S0966-842X(00)88930-1, 7648031.
-
(1995)
Trends Microbiol
, vol.3
, Issue.6
, pp. 229-236
-
-
Clewell, D.B.1
Flannagan, S.E.2
Jaworski, D.D.3
-
32
-
-
0025962238
-
Natural transfer of conjugative transposon Tn916 between gram-positive and gram-negative bacteria
-
207031, 1846142
-
Bertram J, Stratz M, Durre P. Natural transfer of conjugative transposon Tn916 between gram-positive and gram-negative bacteria. J Bacteriol 1991, 173(2):443-448. 207031, 1846142.
-
(1991)
J Bacteriol
, vol.173
, Issue.2
, pp. 443-448
-
-
Bertram, J.1
Stratz, M.2
Durre, P.3
-
33
-
-
70349435397
-
Intra- and interspecies conjugal transfer of Tn916-like elements from Lactococcus lactis in vitro and in vivo
-
2753074, 19666731
-
Boguslawska J, Zycka-Krzesinska J, Wilcks A, Bardowski J. Intra- and interspecies conjugal transfer of Tn916-like elements from Lactococcus lactis in vitro and in vivo. Appl Environ Microbiol 2009, 75(19):6352-6360. 10.1128/AEM.00470-09, 2753074, 19666731.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.19
, pp. 6352-6360
-
-
Boguslawska, J.1
Zycka-Krzesinska, J.2
Wilcks, A.3
Bardowski, J.4
-
34
-
-
67149096102
-
Characterization of the Tn916 conjugative transposon in a food-borne strain of Lactobacillus paracasei
-
2698359, 19395574
-
Devirgiliis C, Coppola D, Barile S, Colonna B, Perozzi G. Characterization of the Tn916 conjugative transposon in a food-borne strain of Lactobacillus paracasei. Appl Environ Microbiol 2009, 75(12):3866-3871. 10.1128/AEM.00589-09, 2698359, 19395574.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.12
, pp. 3866-3871
-
-
Devirgiliis, C.1
Coppola, D.2
Barile, S.3
Colonna, B.4
Perozzi, G.5
-
35
-
-
0034812595
-
Transfer of Tn916-like elements in microcosm dental plaques
-
90760, 11557498
-
Roberts AP, Cheah G, Ready D, Pratten J, Wilson M, Mullany P. Transfer of Tn916-like elements in microcosm dental plaques. Antimicrob Agents Chemother 2001, 45(10):2943-2946. 10.1128/AAC.45.10.2943-2946.2001, 90760, 11557498.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, Issue.10
, pp. 2943-2946
-
-
Roberts, A.P.1
Cheah, G.2
Ready, D.3
Pratten, J.4
Wilson, M.5
Mullany, P.6
-
36
-
-
80052445616
-
Assessment of bacterial antibiotic resistance transfer in the gut
-
Schjørring S, Krogfelt KA. Assessment of bacterial antibiotic resistance transfer in the gut. Int J Microbiol 2010, 2011:Article ID 312956.
-
(2010)
Int J Microbiol
, vol.2011
-
-
Schjørring, S.1
Krogfelt, K.A.2
-
37
-
-
77954761569
-
Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow
-
20601965
-
Wozniak R, Waldor M. Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nature reviews Microbiology 2010, 8(8):552-563. 10.1038/nrmicro2382, 20601965.
-
(2010)
Nature reviews Microbiology
, vol.8
, Issue.8
, pp. 552-563
-
-
Wozniak, R.1
Waldor, M.2
-
38
-
-
66249099218
-
A modular master on the move: the Tn916 family of mobile genetic elements
-
19464182
-
Roberts AP, Mullany P. A modular master on the move: the Tn916 family of mobile genetic elements. Trends Microbiol 2009, 17(6):251-258. 10.1016/j.tim.2009.03.002, 19464182.
-
(2009)
Trends Microbiol
, vol.17
, Issue.6
, pp. 251-258
-
-
Roberts, A.P.1
Mullany, P.2
-
39
-
-
58049208278
-
DNAPlotter: circular and linear interactive genome visualization
-
2612626,2612626, 18990721
-
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 2009, 25:119-120. 10.1093/bioinformatics/btn578, 2612626,2612626, 18990721.
-
(2009)
Bioinformatics
, vol.25
, pp. 119-120
-
-
Carver, T.1
Thomson, N.2
Bleasby, A.3
Berriman, M.4
Parkhill, J.5
-
40
-
-
44249089520
-
Characterization of endogenous plasmids from Lactobacillus salivarius UCC118
-
2394924, 18390685
-
Fang F, Flynn S, Li Y, Claesson MJ, van Pijkeren J-P, Collins JK, van Sinderen D, O'Toole PW. Characterization of endogenous plasmids from Lactobacillus salivarius UCC118. Appl Environ Microbiol 2008, 74(10):3216-3228. 10.1128/AEM.02631-07, 2394924, 18390685.
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.10
, pp. 3216-3228
-
-
Fang, F.1
Flynn, S.2
Li, Y.3
Claesson, M.J.4
van Pijkeren, J.-P.5
Collins, J.K.6
van Sinderen, D.7
O'Toole, P.W.8
-
41
-
-
0028924342
-
A general method for detecting and sizing large plasmids
-
Barton BM, Harding GP, Zuccarelli AJ. A general method for detecting and sizing large plasmids. Analyst Biochem 1995, 226(2):235-240.
-
(1995)
Analyst Biochem
, vol.226
, Issue.2
, pp. 235-240
-
-
Barton, B.M.1
Harding, G.P.2
Zuccarelli, A.J.3
-
42
-
-
0037318685
-
Method for Optimizing Pulsed-Field Gel Electrophoresis Banding Pattern Data
-
2216700, 12552076
-
Warner JE, Onderdonk AB. Method for Optimizing Pulsed-Field Gel Electrophoresis Banding Pattern Data. JMD 2003, 5(1):21-27. 10.1016/S1525-1578(10)60447-3, 2216700, 12552076.
-
(2003)
JMD
, vol.5
, Issue.1
, pp. 21-27
-
-
Warner, J.E.1
Onderdonk, A.B.2
-
43
-
-
0034333343
-
DNA sequence of the insertional hot spot of Tn916 in the Clostridium difficile genome and discovery of a Tn916-like element in an environmental isolate integrated in the same hot spot
-
11040422
-
Wang H, Roberts AP, Mullany P. DNA sequence of the insertional hot spot of Tn916 in the Clostridium difficile genome and discovery of a Tn916-like element in an environmental isolate integrated in the same hot spot. FEMS Microbiol Lett 2000, 192(1):15-20. 10.1111/j.1574-6968.2000.tb09352.x, 11040422.
-
(2000)
FEMS Microbiol Lett
, vol.192
, Issue.1
, pp. 15-20
-
-
Wang, H.1
Roberts, A.P.2
Mullany, P.3
-
44
-
-
77950802816
-
Introducing the bacterial chromid" : not a chromosome, not a plasmid
-
20080407
-
Harrison PW, Lower RPJ, Kim NKD, Young JPW. Introducing the bacterial chromid" : not a chromosome, not a plasmid. Trends Microbiol 2010, 18(4):141-148. 10.1016/j.tim.2009.12.010, 20080407.
-
(2010)
Trends Microbiol
, vol.18
, Issue.4
, pp. 141-148
-
-
Harrison, P.W.1
Lower, R.P.J.2
Kim, N.K.D.3
Young, J.P.W.4
-
45
-
-
41149134242
-
Adapting to environmental changes using specialized paralogs
-
Sanchez-Perez G, Mira A, Nyiro G, Pasˇic´ L, Rodriguez-Valera F. Adapting to environmental changes using specialized paralogs. Trends Genet 2008, 24(4):154-158. 10.1016/j.tig.2008.01.002, 18325625.
-
(2008)
Trends Genet
, vol.24
, Issue.4
, pp. 154-158
-
-
Sanchez-Perez, G.1
Mira, A.2
Nyiro, G.3
Pasˇic´, L.4
Rodriguez-Valera, F.5
-
46
-
-
78149415750
-
Structural peculiarities of linear megaplasmid, pLMA1, from Micrococcus luteus; interfere with pyrosequencing reads assembly
-
2974207, 20652620
-
Wagenknecht M, Dib J, Thu¨rmer A, Daniel R, Fari´as M, Meinhardt F. Structural peculiarities of linear megaplasmid, pLMA1, from Micrococcus luteus; interfere with pyrosequencing reads assembly. Biotechnol Lett 2010, 32(12):1853-1862. 10.1007/s10529-010-0357-y, 2974207, 20652620.
-
(2010)
Biotechnol Lett
, vol.32
, Issue.12
, pp. 1853-1862
-
-
Wagenknecht, M.1
Dib, J.2
Thu¨rmer, A.3
Daniel, R.4
Fari´as, M.5
Meinhardt, F.6
-
47
-
-
53549106603
-
Revised nomenclature for transposable genetic elements
-
3836210, 18778731
-
Roberts AP, Chandler M, Courvalin P, Gue´don G, Mullany P, Pembroke T, Rood JI, Jeffery Smith C, Summers AO, Tsuda M, Berg DE. Revised nomenclature for transposable genetic elements. Plasmid 2008, 60(3):167-173. 10.1016/j.plasmid.2008.08.001, 3836210, 18778731.
-
(2008)
Plasmid
, vol.60
, Issue.3
, pp. 167-173
-
-
Roberts, A.P.1
Chandler, M.2
Courvalin, P.3
Gue´don, G.4
Mullany, P.5
Pembroke, T.6
Rood, J.I.7
Jeffery Smith, C.8
Summers, A.O.9
Tsuda, M.10
Berg, D.E.11
-
48
-
-
79959979274
-
PHAST: A fast phage search tool
-
3125810, 21672955
-
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. PHAST: A fast phage search tool. Nucleic Acids Res 2011, 39(suppl 2):W347-W352. 3125810, 21672955.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W347-W352
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
49
-
-
84860440653
-
RNA in Defense: CRISPRs Protect Prokaryotes against Mobile Genetic Elements
-
Jore MM, Brouns SJJ, van der Oost J. RNA in Defense: CRISPRs Protect Prokaryotes against Mobile Genetic Elements. Cold Spring Harb Perspect Biol 2012, 4(6). http://cshperspectives.cshlp.org/content/4/6/a003657.full.pdf+html.
-
(2012)
Cold Spring Harb Perspect Biol
, vol.4
, Issue.6
-
-
Jore, M.M.1
Brouns, S.J.J.2
van der Oost, J.3
-
50
-
-
0002430107
-
Plasmids
-
Washington, D.C: American Society for Microbiology, Sonenshein JAH AL, Losick R
-
Jannie`re L, Gruss A, Ehrlich D. Plasmids. Bacillus subtilis and other gram-positive bacteria 1993, 625-644. Washington, D.C: American Society for Microbiology, Sonenshein JAH AL, Losick R.
-
(1993)
Bacillus subtilis and other gram-positive bacteria
, pp. 625-644
-
-
L.1
Jannie2
Gruss, A.4
Ehrlich, D.5
-
51
-
-
79961109150
-
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
-
3163573, 21824423
-
Alikhan N-F, Petty N, Ben Zakour N, Beatson S. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 2011, 12(1):402. 10.1186/1471-2164-12-402, 3163573, 21824423.
-
(2011)
BMC Genomics
, vol.12
, Issue.1
, pp. 402
-
-
Alikhan, N.-F.1
Petty, N.2
Ben Zakour, N.3
Beatson, S.4
-
52
-
-
10944235924
-
Comparative genomic structure of prokaryotes
-
15568993
-
Bentley SD, Parkhill J. Comparative genomic structure of prokaryotes. Annu Rev Genet 2004, 38(1):771-791. 10.1146/annurev.genet.38.072902.094318, 15568993.
-
(2004)
Annu Rev Genet
, vol.38
, Issue.1
, pp. 771-791
-
-
Bentley, S.D.1
Parkhill, J.2
-
53
-
-
79960386413
-
Genome Sequence of the Vertebrate Gut Symbiont Lactobacillus reuteri ATCC 53608
-
3147506, 21622738
-
Heavens D, Tailford LE, Crossman L, Jeffers F, MacKenzie DA, Caccamo M, Juge N. Genome Sequence of the Vertebrate Gut Symbiont Lactobacillus reuteri ATCC 53608. J Bacteriol 2011, 193(15):4015-4016. 10.1128/JB.05282-11, 3147506, 21622738.
-
(2011)
J Bacteriol
, vol.193
, Issue.15
, pp. 4015-4016
-
-
Heavens, D.1
Tailford, L.E.2
Crossman, L.3
Jeffers, F.4
MacKenzie, D.A.5
Caccamo, M.6
Juge, N.7
-
54
-
-
21244445445
-
Mapping of essential replication functions of the linear plasmid lp17 of B. burgdorferi by targeted deletion walking
-
15948955
-
Beaurepaire C, Chaconas G. Mapping of essential replication functions of the linear plasmid lp17 of B. burgdorferi by targeted deletion walking. Mol Microbiol 2005, 57(1):132-142. 10.1111/j.1365-2958.2005.04688.x, 15948955.
-
(2005)
Mol Microbiol
, vol.57
, Issue.1
, pp. 132-142
-
-
Beaurepaire, C.1
Chaconas, G.2
-
55
-
-
0027930540
-
Birdirectional replication from an internal origin in a linear Streptomyces plasmid
-
8052852
-
Chang P-C, Cohen SN. Birdirectional replication from an internal origin in a linear Streptomyces plasmid. Science 1994, 265:952-954. 10.1126/science.8052852, 8052852.
-
(1994)
Science
, vol.265
, pp. 952-954
-
-
Chang, P.-C.1
Cohen, S.N.2
-
56
-
-
0345099615
-
Bidirectional replication from an internal ori site of the linear N15 plasmid prophage
-
275552, 14602914
-
Ravin NV, Kuprianov VV, Gilcrease EB, Casjens SR. Bidirectional replication from an internal ori site of the linear N15 plasmid prophage. Nucleic Acids Res 2003, 31(22):6552-6560. 10.1093/nar/gkg856, 275552, 14602914.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.22
, pp. 6552-6560
-
-
Ravin, N.V.1
Kuprianov, V.V.2
Gilcrease, E.B.3
Casjens, S.R.4
-
57
-
-
32644440559
-
Functional characterization of the repA replication gene of linear plasmid prophage N15
-
16129583
-
Mardanov A, Ravin N. Functional characterization of the repA replication gene of linear plasmid prophage N15. Res Microbiol 2006, 157(2):176-183. 10.1016/j.resmic.2005.06.008, 16129583.
-
(2006)
Res Microbiol
, vol.157
, Issue.2
, pp. 176-183
-
-
Mardanov, A.1
Ravin, N.2
-
58
-
-
0026778390
-
Reconstruction of Streptomyces linear plasmid replication from separately cloned DNA fragment: existence pf a cryptic origin of circular replication within the linear plasmid
-
402135, 1631099
-
Shiffman D, Cohen SN. Reconstruction of Streptomyces linear plasmid replication from separately cloned DNA fragment: existence pf a cryptic origin of circular replication within the linear plasmid. Proc Natl Acad Sci U S A 1992, 89(89):6129-6133. 402135, 1631099.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, Issue.89
, pp. 6129-6133
-
-
Shiffman, D.1
Cohen, S.N.2
-
59
-
-
77956552653
-
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
-
2949892, 20843356
-
Laing C, Buchanan C, Taboada E, Zhang Y, Kropinski A, Villegas A, Thomas J, Gannon V. Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions. BMC Bioinformatics 2010, 11(1):461. 10.1186/1471-2105-11-461, 2949892, 20843356.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 461
-
-
Laing, C.1
Buchanan, C.2
Taboada, E.3
Zhang, Y.4
Kropinski, A.5
Villegas, A.6
Thomas, J.7
Gannon, V.8
-
60
-
-
33846931503
-
Similarity and Differences in the Lactobacillus acidophilus Group Identified by Polyphasic Analysis and Comparative Genomics
-
1797336, 17142402
-
Berger B, Pridmore R, Barretto C, Delmas-Julien F, Schreiber K, Arigoni F, Bru¨ssow H. Similarity and Differences in the Lactobacillus acidophilus Group Identified by Polyphasic Analysis and Comparative Genomics. J Bacteriol 2007, 189(4):1311-1321. 10.1128/JB.01393-06, 1797336, 17142402.
-
(2007)
J Bacteriol
, vol.189
, Issue.4
, pp. 1311-1321
-
-
Berger, B.1
Pridmore, R.2
Barretto, C.3
Delmas-Julien, F.4
Schreiber, K.5
Arigoni, F.6
Bru¨ssow, H.7
-
61
-
-
84901020405
-
Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut
-
24799697
-
Joyce SA, MacSharry J, Casey PG, Kinsella M, Murphy EF, Shanahan F, Hill C, Gahan CGM. Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut. Proc Natl Acad Sci 2014, 111(20):7421-7426. 10.1073/pnas.1323599111, 24799697.
-
(2014)
Proc Natl Acad Sci
, vol.111
, Issue.20
, pp. 7421-7426
-
-
Joyce, S.A.1
MacSharry, J.2
Casey, P.G.3
Kinsella, M.4
Murphy, E.F.5
Shanahan, F.6
Hill, C.7
Gahan, C.G.M.8
-
62
-
-
84880660392
-
Lactobacillus salivarius: Bacteriocin and probiotic activity
-
24010610
-
Messaoudi S, Manai M, Kergourlay G, Pre´vost H, Connil N, Chobert JM, Dousset X. Lactobacillus salivarius: Bacteriocin and probiotic activity. Food Microbiol 2013, 36(2):296-304. 10.1016/j.fm.2013.05.010, 24010610.
-
(2013)
Food Microbiol
, vol.36
, Issue.2
, pp. 296-304
-
-
Messaoudi, S.1
Manai, M.2
Kergourlay, G.3
Pre´vost, H.4
Connil, N.5
Chobert, J.M.6
Dousset, X.7
-
63
-
-
34249871146
-
Salivaricin P, one of a family of two-component antilisterial bacteriocins produced by intestinal isolates of Lactobacillus salivarius
-
1932675, 17416691
-
Barrett E, Hayes M, O'Connor P, Gardiner G, Fitzgerald GF, Stanton C, Ross RP, Hill C. Salivaricin P, one of a family of two-component antilisterial bacteriocins produced by intestinal isolates of Lactobacillus salivarius. Appl Environ Microbiol 2007, 73(11):3719-3723. 10.1128/AEM.00666-06, 1932675, 17416691.
-
(2007)
Appl Environ Microbiol
, vol.73
, Issue.11
, pp. 3719-3723
-
-
Barrett, E.1
Hayes, M.2
O'Connor, P.3
Gardiner, G.4
Fitzgerald, G.F.5
Stanton, C.6
Ross, R.P.7
Hill, C.8
-
64
-
-
84855858795
-
Production of Multiple Bacteriocins from a Single Locus by Gastrointestinal Strains of Lactobacillus salivarius
-
3232826, 21984788
-
O'Shea EF, O'Connor PM, Raftis EJ, O'Toole PW, Stanton C, Cotter PD, Ross RP, Hill C. Production of Multiple Bacteriocins from a Single Locus by Gastrointestinal Strains of Lactobacillus salivarius. J Bacteriol 2011, 193(24):6973-6982. 10.1128/JB.06221-11, 3232826, 21984788.
-
(2011)
J Bacteriol
, vol.193
, Issue.24
, pp. 6973-6982
-
-
O'Shea, E.F.1
O'Connor, P.M.2
Raftis, E.J.3
O'Toole, P.W.4
Stanton, C.5
Cotter, P.D.6
Ross, R.P.7
Hill, C.8
-
65
-
-
84892770761
-
ArdA proteins from different mobile genetic elements can bind to the EcoKI Type I DNA methyltransferase of E. coli K12
-
Chen K, Reuter M, Sanghvi B, Roberts GA, Cooper LP, Tilling M, Blakely GW, Dryden DTF. ArdA proteins from different mobile genetic elements can bind to the EcoKI Type I DNA methyltransferase of E. coli K12. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2014, 1844(3):505-511.
-
(2014)
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
, vol.1844
, Issue.3
, pp. 505-511
-
-
Chen, K.1
Reuter, M.2
Sanghvi, B.3
Roberts, G.A.4
Cooper, L.P.5
Tilling, M.6
Blakely, G.W.7
Dryden, D.T.F.8
-
66
-
-
84876194345
-
Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading
-
3624593, 23435978
-
Gue´rillot R, Da Cunha V, Sauvage E, Bouchier C, Glaser P. Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol 2013, 195(9):1979-1990. 10.1128/JB.01745-12, 3624593, 23435978.
-
(2013)
J Bacteriol
, vol.195
, Issue.9
, pp. 1979-1990
-
-
Gue´rillot, R.1
Da Cunha, V.2
Sauvage, E.3
Bouchier, C.4
Glaser, P.5
-
67
-
-
33645471644
-
Opinion of the Scientific Panel on additives and products or substances used in animal feed (FEEDAP) on the updating of the criteria used in the assessment of bacteria for resistance to antibiotics of human or veterinary importance
-
Panel F. Opinion of the Scientific Panel on additives and products or substances used in animal feed (FEEDAP) on the updating of the criteria used in the assessment of bacteria for resistance to antibiotics of human or veterinary importance. EFSA J 2005, 223:1-12.
-
(2005)
EFSA J
, vol.223
, pp. 1-12
-
-
Panel, F.1
-
68
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18(5):821-829. 10.1101/gr.074492.107, 2336801, 18349386.
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
69
-
-
52949096084
-
Next-Generation DNA Sequencing Methods
-
18576944
-
Mardis ER. Next-Generation DNA Sequencing Methods. Annu Rev Genomics Hum Genet 2008, 9(1):387-402. 10.1146/annurev.genom.9.081307.164359, 18576944.
-
(2008)
Annu Rev Genomics Hum Genet
, vol.9
, Issue.1
, pp. 387-402
-
-
Mardis, E.R.1
-
71
-
-
84907014682
-
PHRAP v 1.080812
-
Green P. PHRAP v 1.080812. 1999, [http://phrap.org].
-
(1999)
-
-
Green, P.1
-
72
-
-
77949512406
-
Tablet-next generation sequence assembly visualization
-
2815658, 19965881
-
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. Tablet-next generation sequence assembly visualization. Bioinformatics 2010, 26(3):401-402. 10.1093/bioinformatics/btp666, 2815658, 19965881.
-
(2010)
Bioinformatics
, vol.26
, Issue.3
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
73
-
-
80052211950
-
Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts
-
3231920, 21995554
-
Forde B, Neville B, O' Donnell M, Riboulet-Bisson E, Claesson M, Coghlan A, Ross R, O' Toole P. Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts. Microb Cell Fact 2011, 10(1):S13. 10.1186/1475-2859-10-13, 3231920, 21995554.
-
(2011)
Microb Cell Fact
, vol.10
, Issue.1
, pp. S13
-
-
Forde, B.1
Neville, B.2
O' Donnell, M.3
Riboulet-Bisson, E.4
Claesson, M.5
Coghlan, A.6
Ross, R.7
O' Toole, P.8
-
75
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
11120685
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream M-A, Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 2000, 16(10):944-945. 10.1093/bioinformatics/16.10.944, 11120685.
-
(2000)
Bioinformatics
, vol.16
, Issue.10
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.-A.6
Barrell, B.7
-
76
-
-
24044433279
-
ACT: the Artemis comparison tool
-
15976072
-
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J. ACT: the Artemis comparison tool. Bioinformatics 2005, 21:3422-3423. 10.1093/bioinformatics/bti553, 15976072.
-
(2005)
Bioinformatics
, vol.21
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.A.4
Barrell, B.G.5
Parkhill, J.6
|