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Volumn 8, Issue 9, 2014, Pages 1892-1903

Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea

Author keywords

Baltic Sea; cyanobacteria; ecology; horizontal gene transfer; phycobilisome; pigment

Indexed keywords

ADAPTATION; BRACKISH WATER; CYANOBACTERIUM; GENOME; GROWING SEASON; PHYLOGENETICS; PIGMENT;

EID: 84906942992     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.35     Document Type: Article
Times cited : (60)

References (44)
  • 1
    • 79955456912 scopus 로고    scopus 로고
    • Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood
    • Berger SA, Krompass D, Stamatakis A. 2011 Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood. Syst Biol 60: 291-302.
    • (2011) Syst Biol , vol.60 , pp. 291-302
    • Berger, S.A.1    Krompass, D.2    Stamatakis, A.3
  • 4
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of best-fit models of protein evolution
    • Darriba D, Taboada GL, Doallo R, Posada D.2011 ProtTest 3: fast selection of best-fit models of protein evolution. Bioinforma Oxf Engl 27: 1164-1165.
    • (2011) Bioinforma Oxf Engl , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 5
    • 81355149663 scopus 로고    scopus 로고
    • Ocean transparency from space: Validation of algorithms estimating Secchi depth using MERIS, MODIS and SeaWiFS data
    • Doron M, Babin M, Hembise O, Mangin A, Garnesson P.2011 Ocean transparency from space: validation of algorithms estimating Secchi depth using MERIS, MODIS and SeaWiFS data. Remote Sens Environ 115: 2986-3001.
    • (2011) Remote Sens Environ , vol.115 , pp. 2986-3001
    • Doron, M.1    Babin, M.2    Hembise, O.3    Mangin, A.4    Garnesson, P.5
  • 8
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 33845594673 scopus 로고    scopus 로고
    • Comparative molecular evolution of newly discovered picocyanobacterial strains reveals a phylogenetically informative variable region of b-phycoerythrin 1
    • Everroad RC, Wood AM. (2006). Comparative molecular evolution of newly discovered picocyanobacterial strains reveals a phylogenetically informative variable region of b-phycoerythrin 1. J Phycol 42: 1300-1311.
    • (2006) J Phycol , vol.42 , pp. 1300-1311
    • Everroad, R.C.1    Wood, A.M.2
  • 10
    • 84863105834 scopus 로고    scopus 로고
    • Phycoerythrin evolution and diversification of spectral phenotype in marine Synechococcus and related picocyanobacteria
    • Everroad RC, Wood AM. 2012 Phycoerythrin evolution and diversification of spectral phenotype in marine Synechococcus and related picocyanobacteria. Mol Phylogenet Evol 64: 381-392.
    • (2012) Mol Phylogenet Evol , vol.64 , pp. 381-392
    • Everroad, R.C.1    Wood, A.M.2
  • 11
    • 84859100031 scopus 로고    scopus 로고
    • Diversity and seasonal dynamics of the photoautotrophic picoplankton in Lake Balaton (Hungary
    • Felföldi T, Duleba M, Somogyi B, Vajna B, Nikolausz M, Prsing M et al.2011 Diversity and seasonal dynamics of the photoautotrophic picoplankton in Lake Balaton (Hungary). Aquat Microb Ecol 63: 273-287.
    • (2011) Aquat Microb Ecol , vol.63 , pp. 273-287
    • Felföldi, T.1    Duleba, M.2    Somogyi, B.3    Vajna, B.4    Nikolausz, M.5    Prsing, M.6
  • 12
    • 84860180517 scopus 로고    scopus 로고
    • Long-term changes in Secchi depth and the role of phytoplankton in explaining light attenuation in the Baltic Sea
    • Fleming-Lehtinen V, Laamanen M. 2012 Long-term changes in Secchi depth and the role of phytoplankton in explaining light attenuation in the Baltic Sea. Estuar Coast Shelf Sci 102-103: 1-10.
    • (2012) Estuar Coast Shelf Sci , vol.102-103 , pp. 1-10
    • Fleming-Lehtinen, V.1    Laamanen, M.2
  • 13
    • 0037545904 scopus 로고    scopus 로고
    • Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red sea
    • Fuller NJ, Marie D, Partensky F, Vaulot D, Post AF, Scanlan DJ. (2003). Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red sea. Appl Environ Microbiol 69: 2430-2443.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2430-2443
    • Fuller, N.J.1    Marie, D.2    Partensky, F.3    Vaulot, D.4    Post, A.F.5    Scanlan, D.J.6
  • 14
    • 0041859206 scopus 로고    scopus 로고
    • A molecular understanding of complementary chromatic adaptation
    • Grossman AR. (2003). A molecular understanding of complementary chromatic adaptation. Photosynth Res 76: 207-215.
    • (2003) Photosynth Res , vol.76 , pp. 207-215
    • Grossman, A.R.1
  • 15
    • 84856408849 scopus 로고    scopus 로고
    • Emerging perspectives on the mechanisms, regulation, and distribution of light color acclimation in cyanobacteria
    • Gutu A, Kehoe DM. 2012 Emerging perspectives on the mechanisms, regulation, and distribution of light color acclimation in cyanobacteria. Mol Plant 5: 1-13.
    • (2012) Mol Plant , vol.5 , pp. 1-13
    • Gutu, A.1    Kehoe, D.M.2
  • 16
    • 38149101581 scopus 로고    scopus 로고
    • Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons
    • Haverkamp T, Acinas SG, Doeleman M, Stomp M, Huisman J, Stal LJ. (2008). Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons.. Environ Microbiol 10: 174-188.
    • (2008) Environ Microbiol , vol.10 , pp. 174-188
    • Haverkamp, T.1    Acinas, S.G.2    Doeleman, M.3    Stomp, M.4    Huisman, J.5    Stal, L.J.6
  • 17
    • 63349098310 scopus 로고    scopus 로고
    • Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea
    • Haverkamp T, Schouten D, Doeleman M, Wollenzien U, Huisman J, Stal LJ. (2009). Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea. ISME J 3: 397-408.
    • (2009) ISME J , vol.3 , pp. 397-408
    • Haverkamp, T.1    Schouten, D.2    Doeleman, M.3    Wollenzien, U.4    Huisman, J.5    Stal, L.J.6
  • 20
    • 77956094365 scopus 로고    scopus 로고
    • Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
    • Jardillier L, Zubkov MV, Pearman J, Scanlan DJ.2010 Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME J 4: 1180-1192.
    • (2010) ISME J , vol.4 , pp. 1180-1192
    • Jardillier, L.1    Zubkov, M.V.2    Pearman, J.3    Scanlan, D.J.4
  • 21
    • 78650005387 scopus 로고    scopus 로고
    • A novel phylogenetic clade of picocyanobacteria from the Mazurian lakes (Poland) reflects the early ontogeny of glacial lakes
    • Jasser I, Królicka A, Karnkowska-Ishikawa A.2011 A novel phylogenetic clade of picocyanobacteria from the Mazurian lakes (Poland) reflects the early ontogeny of glacial lakes. FEMS Microbiol Ecol 75: 89-98.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 89-98
    • Jasser, I.1    Królicka, A.2    Karnkowska-Ishikawa, A.3
  • 22
    • 33745939901 scopus 로고    scopus 로고
    • Responding to color: The regulation of complementary chromatic adaptation
    • Kehoe DM, Gutu A. (2006). Responding to color: the regulation of complementary chromatic adaptation. Annu Rev Plant Biol 57: 127-150.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 127-150
    • Kehoe, D.M.1    Gutu, A.2
  • 23
    • 33845873289 scopus 로고    scopus 로고
    • Interactive tree of life (iTOL): An online tool for phylogenetic tree display and annotation
    • Letunic I, Bork P. (2007). Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinforma Oxf Engl 23: 127-128.
    • (2007) Bioinforma Oxf Engl , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 24
    • 17644410730 scopus 로고    scopus 로고
    • The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus strains
    • Mann NH, Clokie MRJ, Millard A, Cook A, Wilson WH, Wheatley PJ et al. (2005). The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus strains. J Bacteriol 187: 3188-3200.
    • (2005) J Bacteriol , vol.187 , pp. 3188-3200
    • Mann, N.H.1    Clokie, M.R.J.2    Millard, A.3    Cook, A.4    Wilson, W.H.5    Wheatley, P.J.6
  • 26
    • 84870790080 scopus 로고    scopus 로고
    • Occurrence of cyanobacteria and cyanotoxin in the Southern Baltic proper Filamentous cyanobacteria versus singlecelled picocyanobacteria
    • Mazur-Marzec H, Sutryk K, Kobos J, Hebel A, Hohlfeld N, Blaszczyk A et al.2013 Occurrence of cyanobacteria and cyanotoxin in the Southern Baltic proper. Filamentous cyanobacteria versus singlecelled picocyanobacteria. Hydrobiologia 701: 235-252.
    • (2013) Hydrobiologia , vol.701 , pp. 235-252
    • Mazur-Marzec, H.1    Sutryk, K.2    Kobos, J.3    Hebel, A.4    Hohlfeld, N.5    Blaszczyk, A.6
  • 27
    • 0025638233 scopus 로고
    • Pigments, size, and distribution of Synechococcus in the North Atlantic and Pacific Oceans
    • Olson RJ, Chisholm SW, Zettler ER, Armbrust EV. (1990). Pigments, size, and distribution of Synechococcus in the North Atlantic and Pacific Oceans. Limnol Oceanogr 35: 45-58.
    • (1990) Limnol Oceanogr , vol.35 , pp. 45-58
    • Olson, R.J.1    Chisholm, S.W.2    Zettler, E.R.3    Armbrust, E.V.4
  • 28
    • 0035140734 scopus 로고    scopus 로고
    • Chromatic adaptation in marine Synechococcus strains
    • Palenik B. (2001). Chromatic adaptation in marine Synechococcus strains. Appl Environ Microbiol 67: 991-994.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 991-994
    • Palenik, B.1
  • 33
    • 84872589843 scopus 로고    scopus 로고
    • Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
    • Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E et al.2013 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci USA 110: 1053-1058.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 1053-1058
    • Shih, P.M.1    Wu, D.2    Latifi, A.3    Axen, S.D.4    Fewer, D.P.5    Talla, E.6
  • 34
    • 40449089171 scopus 로고    scopus 로고
    • Diversity and evolution of phycobilisomes in marine Synechococcus spp.: A comparative genomics study
    • Six C, Thomas J-C, Garczarek L, Ostrowski M, Dufresne A, Blot N et al. (2007). Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biol 8: R259.
    • (2007) Genome Biol , vol.8
    • Six, C.1    Thomas, J.-C.2    Garczarek, L.3    Ostrowski, M.4    Dufresne, A.5    Blot, N.6
  • 35
    • 77950402427 scopus 로고    scopus 로고
    • Periodic picophytoplankton predominance in a large, shallow alkaline lake (Lake Ferto/Neusiedlersee
    • Somogyi B, Felföldi T, Dinka M, Vörös L. 2010 Periodic picophytoplankton predominance in a large, shallow alkaline lake (Lake Ferto/Neusiedlersee). Ann Limnol Int J 1051: 9-19.
    • (2010) Ann Limnol Int J , vol.1051 , pp. 9-19
    • Somogyi, B.1    Felföldi, T.2    Dinka, M.3    Vörös, L.4
  • 36
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 37
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
    • Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. (2005). Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol 3: e144.
    • (2005) PLoS Biol , vol.3
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 38
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (cyanobacteria
    • Urbach E, Scanlan DJ, Distel DL, Waterbury JB, Chisholm SW. (1998). Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (cyanobacteria). J Mol Evol 46: 188-201.
    • (1998) J Mol Evol , vol.46 , pp. 188-201
    • Urbach, E.1    Scanlan, D.J.2    Distel, D.L.3    Waterbury, J.B.4    Chisholm, S.W.5
  • 40
    • 34250170456 scopus 로고    scopus 로고
    • Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
    • Weigele PR, Pope WH, Pedulla ML, Houtz JM, Smith AL, Conway JF et al. (2007). Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol 9: 1675-1695.
    • (2007) Environ Microbiol , vol.9 , pp. 1675-1695
    • Weigele, P.R.1    Pope, W.H.2    Pedulla, M.L.3    Houtz, J.M.4    Smith, A.L.5    Conway, J.F.6
  • 41
    • 0037082414 scopus 로고    scopus 로고
    • Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: Sublocation preference of integrase subfamilies
    • Williams KP. (2002). Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies. Nucleic Acids Res 30: 866-875.
    • (2002) Nucleic Acids Res , vol.30 , pp. 866-875
    • Williams, K.P.1
  • 43
    • 84859242353 scopus 로고    scopus 로고
    • Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
    • Wu M, Scott AJ. 2012 Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinforma Oxf Engl 28: 1033-1034.
    • (2012) Bioinforma Oxf Engl , vol.28 , pp. 1033-1034
    • Wu, M.1    Scott, A.J.2
  • 44
    • 84862630738 scopus 로고    scopus 로고
    • Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic
    • Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LDH et al. 2012 Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. ISME J 6: 1403-1414.
    • (2012) ISME J , vol.6 , pp. 1403-1414
    • Zeigler Allen, L.1    Allen, E.E.2    Badger, J.H.3    McCrow, J.P.4    Paulsen, I.T.5    Elbourne, L.D.H.6


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