-
1
-
-
84881413993
-
Pivoting the plant immune system from dissection to deployment
-
Dangl JL, Horvath DM, &, Staskawicz BJ, (2013) Pivoting the plant immune system from dissection to deployment. Science 341, 746-751.
-
(2013)
Science
, vol.341
, pp. 746-751
-
-
Dangl, J.L.1
Horvath, D.M.2
Staskawicz, B.J.3
-
2
-
-
84870057622
-
Intrinsically disordered proteins: A 10-year recap
-
Tompa P, (2012) Intrinsically disordered proteins: a 10-year recap. Trends Biochem Sci 37, 509-516.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 509-516
-
-
Tompa, P.1
-
3
-
-
84878940937
-
A decade and a half of protein intrinsic disorder: Biology still waits for physics
-
Uversky VN, (2013) A decade and a half of protein intrinsic disorder: biology still waits for physics. Protein Sci. 22, 693-724.
-
(2013)
Protein Sci
, vol.22
, pp. 693-724
-
-
Uversky, V.N.1
-
4
-
-
84859361768
-
Structural disorder in eukaryotes
-
doi: 10.1371/journal.pone.0034687
-
Pancsa R, &, Tompa P, (2012) Structural disorder in eukaryotes. PLoS One. 7, e34687. doi: 10.1371/journal.pone.0034687.
-
(2012)
PLoS One
, vol.7
-
-
Pancsa, R.1
Tompa, P.2
-
5
-
-
84859701551
-
Orderly order in protein intrinsic disorder distribution: Disorder in thirty five hundred proteomes from viruses and the three domains of life
-
Xue B, Dunker AK, &, Uversky VN, (2012) Orderly order in protein intrinsic disorder distribution: disorder in thirty five hundred proteomes from viruses and the three domains of life. J Biomol Struct Dyn 30, 131-142.
-
(2012)
J Biomol Struct Dyn
, vol.30
, pp. 131-142
-
-
Xue, B.1
Dunker, A.K.2
Uversky, V.N.3
-
6
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, et al,. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122, 957-968.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
-
7
-
-
27144464910
-
Flexible nets - The roles of intrinsic disorder in protein interaction networks
-
Dunker AK, Cortese MS, Romero P, Iakoucheva LM, &, Uversky VN, (2005) Flexible nets-the roles of intrinsic disorder in protein interaction networks. FEBS J 272, 5129-5148.
-
(2005)
FEBS J
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
8
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, &, Iakoucheva LM, (2006) Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput Biol 2, 890-901.
-
(2006)
PLoS Comput Biol
, vol.2
, pp. 890-901
-
-
Haynes, C.1
Oldfield, C.J.2
Ji, F.3
Klitgord, N.4
Cusick, M.E.5
Radivojac, P.6
Uversky, V.N.7
Vidal, M.8
Iakoucheva, L.M.9
-
9
-
-
33645214608
-
Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
-
Patil A, &, Nakamura H, (2006) Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks. FEBS Lett 580, 2041-2045.
-
(2006)
FEBS Lett
, vol.580
, pp. 2041-2045
-
-
Patil, A.1
Nakamura, H.2
-
10
-
-
25144472591
-
Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
-
Uversky VN, Oldfield CJ, &, Dunker AK, (2005) Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. J Mol Recognit 18, 343-384.
-
(2005)
J Mol Recognit
, vol.18
, pp. 343-384
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
12
-
-
40949117264
-
Flexible nets: Disorder and induced fit in the associations of p53 and 14-3-3 with their partners
-
Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, &, Dunker AK, (2008) Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. Bmc Genomics 9 (Suppl 1), S1.
-
(2008)
Bmc Genomics
, vol.9
, Issue.SUPPL. 1
-
-
Oldfield, C.J.1
Meng, J.2
Yang, J.Y.3
Yang, M.Q.4
Uversky, V.N.5
Dunker, A.K.6
-
13
-
-
84878627017
-
Intrinsic disorder-based protein interactions and their modulators
-
Uversky VN, (2013) Intrinsic disorder-based protein interactions and their modulators. Curr Pharm Des 19, 4191-4213.
-
(2013)
Curr Pharm des
, vol.19
, pp. 4191-4213
-
-
Uversky, V.N.1
-
14
-
-
84896336036
-
The binding mechanisms of intrinsically disordered proteins
-
Dogan J, Gianni S, &, Jemth P, (2014) The binding mechanisms of intrinsically disordered proteins. Phys Chem Chem Phys 16, 6323-6331.
-
(2014)
Phys Chem Chem Phys
, vol.16
, pp. 6323-6331
-
-
Dogan, J.1
Gianni, S.2
Jemth, P.3
-
15
-
-
84901017485
-
Advantages of proteins being disordered
-
Liu ZR, &, Huang YQ, (2014) Advantages of proteins being disordered. Protein Sci 23, 539-550.
-
(2014)
Protein Sci
, vol.23
, pp. 539-550
-
-
Liu, Z.R.1
Huang, Y.Q.2
-
16
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, Oh JS, Oldfield CJ, Campen AM, Ratliff CR, Hipps KW, et al,. (2001) Intrinsically disordered protein. J Mol Graph Model 19, 26-59.
-
(2001)
J Mol Graph Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
Oh, J.S.6
Oldfield, C.J.7
Campen, A.M.8
Ratliff, C.R.9
Hipps, K.W.10
-
17
-
-
0002086583
-
Nucleotide binding proteins
-
(Balaban M. ed.), Elsevier/North-Holland, New York
-
Schulz GE, (1979) Nucleotide binding proteins. In Molecular Mechanism of Biological Recognition (, Balaban M, ed.), pp. 79-94. Elsevier/North-Holland, New York.
-
(1979)
Molecular Mechanism of Biological Recognition
, pp. 79-94
-
-
Schulz, G.E.1
-
18
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, &, Obradovic Z, (2002) Intrinsic disorder and protein function. Biochemistry 41, 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
19
-
-
36749037699
-
Mining alpha-helix-forming molecular recognition features with cross species sequence alignments
-
Cheng YG, Oldfield CJ, Meng JW, Romero P, Uversky VN, &, Dunker AK, (2007) Mining alpha-helix-forming molecular recognition features with cross species sequence alignments. Biochemistry 46, 13468-13477.
-
(2007)
Biochemistry
, vol.46
, pp. 13468-13477
-
-
Cheng, Y.G.1
Oldfield, C.J.2
Meng, J.W.3
Romero, P.4
Uversky, V.N.5
Dunker, A.K.6
-
20
-
-
24944546549
-
Coupled folding and binding with alpha-helix-forming molecular recognition elements
-
Oldfield CJ, Cheng YG, Cortese MS, Romero P, Uversky VN, &, Dunker AK, (2005) Coupled folding and binding with alpha-helix-forming molecular recognition elements. Biochemistry 44, 12454-12470.
-
(2005)
Biochemistry
, vol.44
, pp. 12454-12470
-
-
Oldfield, C.J.1
Cheng, Y.G.2
Cortese, M.S.3
Romero, P.4
Uversky, V.N.5
Dunker, A.K.6
-
21
-
-
33748456399
-
Analysis of molecular recognition features (MoRFs)
-
Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, &, Uversky VN, (2006) Analysis of molecular recognition features (MoRFs). J Mol Biol 362, 1043-1059.
-
(2006)
J Mol Biol
, vol.362
, pp. 1043-1059
-
-
Mohan, A.1
Oldfield, C.J.2
Radivojac, P.3
Vacic, V.4
Cortese, M.S.5
Dunker, A.K.6
Uversky, V.N.7
-
22
-
-
34250815165
-
Characterization of molecular recognition features, MoRFs, and their binding partners
-
Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, &, Dunker AK, (2007) Characterization of molecular recognition features, MoRFs, and their binding partners. J Prot Res 6, 2351-2366.
-
(2007)
J Prot Res
, vol.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
Uversky, V.N.6
Dunker, A.K.7
-
23
-
-
84874524363
-
Multifarious roles of intrinsic disorder in proteins illustrate its broad impact on plant biology
-
Sun X, Rikkerink EHA, Jones WT, &, Uversky VN, (2013) Multifarious roles of intrinsic disorder in proteins illustrate its broad impact on plant biology. Plant Cell 25, 38-55.
-
(2013)
Plant Cell
, vol.25
, pp. 38-55
-
-
Sun, X.1
Rikkerink, E.H.A.2
Jones, W.T.3
Uversky, V.N.4
-
24
-
-
0032422882
-
Plant disease-resistance proteins and the gene-for-gene concept
-
van der Biezen EA, &, Jones JDG, (1998) Plant disease-resistance proteins and the gene-for-gene concept. Trends Biochem Sci 23, 454-456.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 454-456
-
-
Van Der Biezen, E.A.1
Jones, J.D.G.2
-
25
-
-
10344257928
-
Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1
-
Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, &, Dangl JL, (2004) Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant Cell 16, 2822-2835.
-
(2004)
Plant Cell
, vol.16
, pp. 2822-2835
-
-
Belkhadir, Y.1
Nimchuk, Z.2
Hubert, D.A.3
Mackey, D.4
Dangl, J.L.5
-
26
-
-
20444369525
-
Two Pseudomonas syringae type III effectors inhibit RIN4-regulated basal defense in Arabidopsis
-
Kim MG, da Cunha L, McFall AJ, Belkhadir Y, DebRoy S, Dangl JL, &, Mackey D, (2005) Two Pseudomonas syringae type III effectors inhibit RIN4-regulated basal defense in Arabidopsis. Cell 121, 749-759.
-
(2005)
Cell
, vol.121
, pp. 749-759
-
-
Kim, M.G.1
Da Cunha, L.2
McFall, A.J.3
Belkhadir, Y.4
Debroy, S.5
Dangl, J.L.6
Mackey, D.7
-
27
-
-
70349656645
-
Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors
-
Luo Y, Caldwell KS, Wroblewski T, Wright ME, &, Michelmore RW, (2009) Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors. Plant Cell 21, 2458-2472.
-
(2009)
Plant Cell
, vol.21
, pp. 2458-2472
-
-
Luo, Y.1
Caldwell, K.S.2
Wroblewski, T.3
Wright, M.E.4
Michelmore, R.W.5
-
28
-
-
76649108592
-
The type III effector HopF2(Pto) targets Arabidopsis RIN4 protein to promote Pseudomonas syringae virulence
-
Wilton M, Subramaniam R, Elmore J, Felsensteiner C, Coaker G, &, Desveaux D, (2010) The type III effector HopF2(Pto) targets Arabidopsis RIN4 protein to promote Pseudomonas syringae virulence. Proc Natl Acad Sci USA 107, 2349-2354.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 2349-2354
-
-
Wilton, M.1
Subramaniam, R.2
Elmore, J.3
Felsensteiner, C.4
Coaker, G.5
Desveaux, D.6
-
29
-
-
84873270121
-
GmRIN4 protein family members function nonredundantly in soybean race-specific resistance against Pseudomonas syringae
-
Selote D, Robin GP, &, Kachroo A, (2013) GmRIN4 protein family members function nonredundantly in soybean race-specific resistance against Pseudomonas syringae. New Phytol 197, 1225-1235.
-
(2013)
New Phytol
, vol.197
, pp. 1225-1235
-
-
Selote, D.1
Robin, G.P.2
Kachroo, A.3
-
30
-
-
82755195642
-
Separable fragments and membrane tethering of Arabidopsis RIN4 regulate its suppression of PAMP-triggered immunity
-
Afzal AJ, da Cunha L, &, Mackey D, (2011) Separable fragments and membrane tethering of Arabidopsis RIN4 regulate its suppression of PAMP-triggered immunity. Plant Cell 23, 3798-3811.
-
(2011)
Plant Cell
, vol.23
, pp. 3798-3811
-
-
Afzal, A.J.1
Da Cunha, L.2
Mackey, D.3
-
31
-
-
84877601094
-
The role of NOI-domain containing proteins in plant immune signaling
-
doi: 10.1186/1471-2164-14-327
-
Afzal AJ, Kim JH, &, Mackey D, (2013) The role of NOI-domain containing proteins in plant immune signaling. BMC Genomics 14, 327. doi: 10.1186/1471-2164-14-327.
-
(2013)
BMC Genomics
, vol.14
, pp. 327
-
-
Afzal, A.J.1
Kim, J.H.2
Mackey, D.3
-
32
-
-
34047233602
-
Type III effector activation via nucleotide binding, phosphorylation, and host target interaction
-
doi: 10.1371/journal.ppat.0030048
-
Desveaux D, Singer AU, Wu A-J, McNulty BC, Musselwhite L, Nimchuk Z, Sondek J, &, Dangl JL, (2007) Type III effector activation via nucleotide binding, phosphorylation, and host target interaction. PLoS Pathog 3, e48. doi: 10.1371/journal.ppat.0030048.
-
(2007)
PLoS Pathog
, vol.3
-
-
Desveaux, D.1
Singer, A.U.2
Wu, A.-J.3
McNulty, B.C.4
Musselwhite, L.5
Nimchuk, Z.6
Sondek, J.7
Dangl, J.L.8
-
33
-
-
84863034152
-
GRAS proteins: The versatile roles of intrinsically disordered proteins in plant signalling
-
Sun X, Jones WT, &, Rikkerink EHA, (2012) GRAS proteins: the versatile roles of intrinsically disordered proteins in plant signalling. Biochem J 442, 1-12.
-
(2012)
Biochem J
, vol.442
, pp. 1-12
-
-
Sun, X.1
Jones, W.T.2
Rikkerink, E.H.A.3
-
34
-
-
77951234309
-
N-terminal domains of della proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors
-
Sun XL, Jones WT, Harvey D, Edwards PJB, Pascal SM, Kirk C, Considine T, Sheerin DJ, Rakonjac J, Oldfield CJ, et al,. (2010) N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors. J Biol Chem 285, 11557-11571.
-
(2010)
J Biol Chem
, vol.285
, pp. 11557-11571
-
-
Sun, X.L.1
Jones, W.T.2
Harvey, D.3
Edwards, P.J.B.4
Pascal, S.M.5
Kirk, C.6
Considine, T.7
Sheerin, D.J.8
Rakonjac, J.9
Oldfield, C.J.10
-
35
-
-
84873954938
-
The intrinsically disordered N-terminal region of AtREM1.3 Remorin protein mediates protein-protein interactions
-
Marin M, Thallmair V, &, Ott T, (2012) The intrinsically disordered N-terminal region of AtREM1.3 Remorin protein mediates protein-protein interactions. J Biol Chem 287, 39982-39991.
-
(2012)
J Biol Chem
, vol.287
, pp. 39982-39991
-
-
Marin, M.1
Thallmair, V.2
Ott, T.3
-
36
-
-
84868205256
-
Order by disorder in plant signaling
-
Kragelund BB, Jensen MK, &, Skriver K, (2012) Order by disorder in plant signaling. Trends Plant Sci 17, 625-632.
-
(2012)
Trends Plant Sci
, vol.17
, pp. 625-632
-
-
Kragelund, B.B.1
Jensen, M.K.2
Skriver, K.3
-
37
-
-
0036153571
-
What does it mean to be natively unfolded?
-
Uversky VN, (2002) What does it mean to be natively unfolded? Eur J Biochem 269, 2-12.
-
(2002)
Eur J Biochem
, vol.269
, pp. 2-12
-
-
Uversky, V.N.1
-
38
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky VN, (2002) Natively unfolded proteins: a point where biology waits for physics. Protein Sci 11, 739-756.
-
(2002)
Protein Sci
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
39
-
-
0029924194
-
Further evidence on the equilibrium 'pre-molten globule state': Four-state guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature
-
Uversky VN, &, Ptitsyn OB, (1996) Further evidence on the equilibrium 'pre-molten globule state': four-state guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature. J Mol Biol 255, 215-228.
-
(1996)
J Mol Biol
, vol.255
, pp. 215-228
-
-
Uversky, V.N.1
Ptitsyn, O.B.2
-
40
-
-
30344432688
-
Assessing protein disorder and induced folding
-
Receveur-Brechot V, Bourhis JM, Uversky VN, Canard B, &, Longhi S, (2006) Assessing protein disorder and induced folding. Proteins: Struct, Funct, Bioinf 62, 24-45.
-
(2006)
Proteins: Struct, Funct, Bioinf
, vol.62
, pp. 24-45
-
-
Receveur-Brechot, V.1
Bourhis, J.M.2
Uversky, V.N.3
Canard, B.4
Longhi, S.5
-
41
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa P, (2002) Intrinsically unstructured proteins. Trends Biochem Sci 27, 527-533.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
42
-
-
0023785593
-
Secondary structure of proteins through circular-dichroism spectroscopy
-
Johnson WC, (1988) Secondary structure of proteins through circular-dichroism spectroscopy. Ann Rev Biophys Biophys Chem 17, 145-166.
-
(1988)
Ann Rev Biophys Biophys Chem
, vol.17
, pp. 145-166
-
-
Johnson, W.C.1
-
43
-
-
0019005874
-
Determination of protein secondary structure in solution by vacuum ultraviolet circular dichroism
-
Brahms S, &, Brahms J, (1980) Determination of protein secondary structure in solution by vacuum ultraviolet circular dichroism. J Mol Biol 138, 149-178.
-
(1980)
J Mol Biol
, vol.138
, pp. 149-178
-
-
Brahms, S.1
Brahms, J.2
-
44
-
-
0024066499
-
Reassessment of the electronic circular-dichroism criteria for random coil conformations of poly(L-lysine) and the implications for protein folding and denaturation studies
-
Drake AF, Siligardi G, &, Gibbons WA, (1988) Reassessment of the electronic circular-dichroism criteria for random coil conformations of poly(L-lysine) and the implications for protein folding and denaturation studies. Biophys Chem 31, 143-146.
-
(1988)
Biophys Chem
, vol.31
, pp. 143-146
-
-
Drake, A.F.1
Siligardi, G.2
Gibbons, W.A.3
-
45
-
-
0002251831
-
Circular dichroism and conformation of unordered polypeptides
-
Woody R, (1992) Circular dichroism and conformation of unordered polypeptides. Adv Biophys Chem 2, 37-79.
-
(1992)
Adv Biophys Chem
, vol.2
, pp. 37-79
-
-
Woody, R.1
-
46
-
-
0030809003
-
The role of PII conformations in the calculation of peptide fractional helix content
-
Park SH, Shalongo W, &, Stellwagen E, (1997) The role of PII conformations in the calculation of peptide fractional helix content. Protein Sci 6, 1694-1700.
-
(1997)
Protein Sci
, vol.6
, pp. 1694-1700
-
-
Park, S.H.1
Shalongo, W.2
Stellwagen, E.3
-
47
-
-
0036035968
-
Polyproline II structure in proteins: Identification by chiroptical spectroscopies, stability, and functions
-
Bochicchio B, &, Tamburro AM, (2002) Polyproline II structure in proteins: identification by chiroptical spectroscopies, stability, and functions. Chirality 14, 782-792.
-
(2002)
Chirality
, vol.14
, pp. 782-792
-
-
Bochicchio, B.1
Tamburro, A.M.2
-
48
-
-
0036006031
-
Temperature-induced extended helix/random coil transitions in a group 1 late embryogenesis-abundant protein from soybean
-
Soulages JL, Kim K, Walters C, &, Cushman JC, (2002) Temperature-induced extended helix/random coil transitions in a group 1 late embryogenesis-abundant protein from soybean. Plant Physiol 128, 822-832.
-
(2002)
Plant Physiol
, vol.128
, pp. 822-832
-
-
Soulages, J.L.1
Kim, K.2
Walters, C.3
Cushman, J.C.4
-
49
-
-
0346034535
-
Conformation of a group 2 late embryogenesis abundant protein from soybean. Evidence of poly (L-proline)-type II structure
-
Soulages JL, Kim K, Arrese EL, Walters C, &, Cushman JC, (2003) Conformation of a group 2 late embryogenesis abundant protein from soybean. Evidence of poly (L-proline)-type II structure. Plant Physiol 131, 963-975.
-
(2003)
Plant Physiol
, vol.131
, pp. 963-975
-
-
Soulages, J.L.1
Kim, K.2
Arrese, E.L.3
Walters, C.4
Cushman, J.C.5
-
50
-
-
33745655415
-
Structural investigation of disordered stress proteins. Comparison of full-length dehydrins with isolated peptides of their conserved segments
-
Mouillon JM, Gustafsson P, &, Harryson P, (2006) Structural investigation of disordered stress proteins. Comparison of full-length dehydrins with isolated peptides of their conserved segments. Plant Physiol 141, 638-650.
-
(2006)
Plant Physiol
, vol.141
, pp. 638-650
-
-
Mouillon, J.M.1
Gustafsson, P.2
Harryson, P.3
-
51
-
-
0032574795
-
Transcriptional activator-coactivator recognition: Nascent folding of a kinase-inducible transactivation domain predicts its structure on coactivator binding
-
Hua QX, Jia WH, Bullock BP, Habener JF, &, Weiss MA, (1998) Transcriptional activator-coactivator recognition: nascent folding of a kinase-inducible transactivation domain predicts its structure on coactivator binding. Biochemistry 37, 5858-5866.
-
(1998)
Biochemistry
, vol.37
, pp. 5858-5866
-
-
Hua, Q.X.1
Jia, W.H.2
Bullock, B.P.3
Habener, J.F.4
Weiss, M.A.5
-
52
-
-
33847795359
-
Intrinsic disorder and functional proteomics
-
Radivojac P, Iakoucheva LM, Oldfield CJ, Obradovic Z, Uversky VN, &, Dunker AK, (2007) Intrinsic disorder and functional proteomics. Biophys J 92, 1439-1456.
-
(2007)
Biophys J
, vol.92
, pp. 1439-1456
-
-
Radivojac, P.1
Iakoucheva, L.M.2
Oldfield, C.J.3
Obradovic, Z.4
Uversky, V.N.5
Dunker, A.K.6
-
53
-
-
34247640113
-
Predicting protein disorder and induced folding: From theoretical principles to practical applications
-
Bourhis JM, Canard B, &, Longhi S, (2007) Predicting protein disorder and induced folding: from theoretical principles to practical applications. Curr Protein Pept Sci 8, 135-149.
-
(2007)
Curr Protein Pept Sci
, vol.8
, pp. 135-149
-
-
Bourhis, J.M.1
Canard, B.2
Longhi, S.3
-
54
-
-
0034669882
-
Why are 'natively unfolded' proteins unstructured under physiologic conditions?
-
Uversky VN, Gillespie JR, &, Fink AL, (2000) Why are 'natively unfolded' proteins unstructured under physiologic conditions? Proteins Struct Funct Genet 41, 415-427.
-
(2000)
Proteins Struct Funct Genet
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
55
-
-
13644257647
-
Comparing and combining predictors of mostly disordered proteins
-
Oldfield CJ, Cheng Y, Cortese MS, Brown CJ, Uversky VN, &, Dunker AK, (2005) Comparing and combining predictors of mostly disordered proteins. Biochemistry 44, 1989-2000.
-
(2005)
Biochemistry
, vol.44
, pp. 1989-2000
-
-
Oldfield, C.J.1
Cheng, Y.2
Cortese, M.S.3
Brown, C.J.4
Uversky, V.N.5
Dunker, A.K.6
-
56
-
-
84891464898
-
Subclassifying disordered proteins by the CH-CDF plot method
-
Huang F, Oldfield C, Meng J, Hsu W.-L, Xue B, Uversky VN, Romero P, &, Dunker AK, (2012) Subclassifying disordered proteins by the CH-CDF plot method. Pac Symp Biocomput 17, 128-139.
-
(2012)
Pac Symp Biocomput
, vol.17
, pp. 128-139
-
-
Huang, F.1
Oldfield, C.2
Meng, J.3
Hsu, W.-L.4
Xue, B.5
Uversky, V.N.6
Romero, P.7
Dunker, A.K.8
-
57
-
-
41049091705
-
Intrinsic disorder in pathogenic and non-pathogenic microbes: Discovering and analyzing the unfoldomes of early-branching eukaryotes
-
Mohan A, Sullivan WJ, Radivojac P, Dunker AK, &, Uversky VN, (2008) Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes. Mol BioSyst 4, 328-340.
-
(2008)
Mol BioSyst
, vol.4
, pp. 328-340
-
-
Mohan, A.1
Sullivan, W.J.2
Radivojac, P.3
Dunker, A.K.4
Uversky, V.N.5
-
58
-
-
76849087968
-
PONDR-FIT: A meta-predictor of intrinsically disordered amino acids
-
Xue B, Dunbrack RL, Williams RW, Dunker AK, &, Uversky VN, (2010) PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochim Biophys Acta 1804, 996-1010.
-
(2010)
Biochim Biophys Acta
, vol.1804
, pp. 996-1010
-
-
Xue, B.1
Dunbrack, R.L.2
Williams, R.W.3
Dunker, A.K.4
Uversky, V.N.5
-
59
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero P, Obradovic Z, Li XH, Garner EC, Brown CJ, &, Dunker AK, (2001) Sequence complexity of disordered protein. Proteins Struct Funct Genet 42, 38-48.
-
(2001)
Proteins Struct Funct Genet
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.H.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
60
-
-
34547599318
-
Natively unstructured loops differ from other loops
-
Schlessinger A, Liu JF, &, Rost B, (2007) Natively unstructured loops differ from other loops. PLoS Comput Biol 3, 1335-1346.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. 1335-1346
-
-
Schlessinger, A.1
Liu, J.F.2
Rost, B.3
-
61
-
-
67049119327
-
Prediction of protein binding regions in disordered proteins
-
doi: 10.1371/journal.pcbi.1000376
-
Meszaros B, Simon I, &, Dosztanyi Z, (2009) Prediction of protein binding regions in disordered proteins. PLoS Comput Biol 5, e1000376. doi: 10.1371/journal.pcbi.1000376.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Meszaros, B.1
Simon, I.2
Dosztanyi, Z.3
-
62
-
-
0030690133
-
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
-
Callebaut I, Labesse G, Durand P, Poupon A, Canard L, Chomilier J, Henrissat B, &, Mornon JP, (1997) Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives. Cell Mol Life Sci 53, 621-645.
-
(1997)
Cell Mol Life Sci
, vol.53
, pp. 621-645
-
-
Callebaut, I.1
Labesse, G.2
Durand, P.3
Poupon, A.4
Canard, L.5
Chomilier, J.6
Henrissat, B.7
Mornon, J.P.8
-
63
-
-
13844316456
-
Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2
-
Chisholm ST, Dahlbeck D, Krishnamurthy N, Day B, Sjolander K, &, Staskawicz BJ, (2005) Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2. Proc Natl Acad Sci USA 102, 2087-2092.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2087-2092
-
-
Chisholm, S.T.1
Dahlbeck, D.2
Krishnamurthy, N.3
Day, B.4
Sjolander, K.5
Staskawicz, B.J.6
-
64
-
-
80052622990
-
A functionally required unfoldome from the plant kingdom: Intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development
-
Sun X, Xue B, Jones WT, Rikkerink E, Dunker AK, &, Uversky VN, (2011) A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development. Plant Mol Biol 77, 205-223.
-
(2011)
Plant Mol Biol
, vol.77
, pp. 205-223
-
-
Sun, X.1
Xue, B.2
Jones, W.T.3
Rikkerink, E.4
Dunker, A.K.5
Uversky, V.N.6
-
65
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter M, Simon I, Friedrich P, &, Tompa P, (2004) Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J Mol Biol 338, 1015-1026.
-
(2004)
J Mol Biol
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
66
-
-
18144399349
-
The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation
-
Kim HS, Desveaux D, Singer AU, Patel P, Sondek J, &, Dangl JL, (2005) The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation. Proc Natl Acad Sci USA 102, 6496-6501.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6496-6501
-
-
Kim, H.S.1
Desveaux, D.2
Singer, A.U.3
Patel, P.4
Sondek, J.5
Dangl, J.L.6
-
67
-
-
20344400382
-
The structure of 'unstructured' regions in peptides and proteins: Role of the polyproline II helix in protein folding and recognition
-
Rath A, Davidson AR, &, Deber CM, (2005) The structure of 'unstructured' regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition. Biopolymers 80, 179-185.
-
(2005)
Biopolymers
, vol.80
, pp. 179-185
-
-
Rath, A.1
Davidson, A.R.2
Deber, C.M.3
-
68
-
-
13944275600
-
Properties of polyproline II, a secondary structure element implicated in protein-protein interactions
-
Cubellis MV, Caillez F, Blundell TL, &, Lovell SC, (2005) Properties of polyproline II, a secondary structure element implicated in protein-protein interactions. Proteins: Struct, Funct, Bioinf 58, 880-892.
-
(2005)
Proteins: Struct, Funct, Bioinf
, vol.58
, pp. 880-892
-
-
Cubellis, M.V.1
Caillez, F.2
Blundell, T.L.3
Lovell, S.C.4
-
69
-
-
0036129072
-
Polyproline II helical structure in protein unfolded states: Lysine peptides revisited
-
Rucker AL, &, Creamer TP, (2002) Polyproline II helical structure in protein unfolded states: lysine peptides revisited. Protein Sci 11, 980-985.
-
(2002)
Protein Sci
, vol.11
, pp. 980-985
-
-
Rucker, A.L.1
Creamer, T.P.2
-
70
-
-
84878259928
-
Polyproline-II helix in proteins: Structure and function
-
Adzhubei AA, Sternberg MJE, &, Makarov AA, (2013) Polyproline-II helix in proteins: structure and function. J Mol Biol 425, 2100-2132.
-
(2013)
J Mol Biol
, vol.425
, pp. 2100-2132
-
-
Adzhubei, A.A.1
Sternberg, M.J.E.2
Makarov, A.A.3
-
71
-
-
24044540256
-
Specificity and versatility of SH3 and other proline-recognition domains: Structural basis and implications for cellular signal transduction
-
Li SSC, (2005) Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction. Biochem J 390, 641-653.
-
(2005)
Biochem J
, vol.390
, pp. 641-653
-
-
Li, S.S.C.1
-
72
-
-
0035209325
-
Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis
-
Lam BCH, Sage TL, Bianchi F, &, Blumwald E, (2001) Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Plant Cell 13, 2499-2512.
-
(2001)
Plant Cell
, vol.13
, pp. 2499-2512
-
-
Lam, B.C.H.1
Sage, T.L.2
Bianchi, F.3
Blumwald, E.4
-
73
-
-
65549139776
-
Flexible structures and ligand interactions of tandem repeats consisting of proline, glycine, asparagine, serine, and/or threonine rich oligopeptides in proteins
-
Matsushima N, Yoshida H, Kumaki Y, Kamiya M, Tanaka T, Izumi Y, &, Kretsinger RH, (2008) Flexible structures and ligand interactions of tandem repeats consisting of proline, glycine, asparagine, serine, and/or threonine rich oligopeptides in proteins. Curr Protein Pept Sci 9, 591-610.
-
(2008)
Curr Protein Pept Sci
, vol.9
, pp. 591-610
-
-
Matsushima, N.1
Yoshida, H.2
Kumaki, Y.3
Kamiya, M.4
Tanaka, T.5
Izumi, Y.6
Kretsinger, R.H.7
-
74
-
-
0141566396
-
Genetic and molecular evidence that the Pseudomonas syringae type III effector protein AvrRpt2 is a cysteine protease
-
Axtell MJ, Chisholm ST, Dahlbeck D, &, Staskawicz BJ, (2003) Genetic and molecular evidence that the Pseudomonas syringae type III effector protein AvrRpt2 is a cysteine protease. Mol Microbiol 49, 1537-1546.
-
(2003)
Mol Microbiol
, vol.49
, pp. 1537-1546
-
-
Axtell, M.J.1
Chisholm, S.T.2
Dahlbeck, D.3
Staskawicz, B.J.4
-
75
-
-
84859879608
-
Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling
-
M111.014555. DOI: 10.1074/mcp.M111.014555
-
Elmore JM, Liu J, Smith B, Phinney B, &, Coaker G, (2012) Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling. Mol Cell Proteomics 11, M111.014555. DOI: 10.1074/mcp.M111.014555.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Elmore, J.M.1
Liu, J.2
Smith, B.3
Phinney, B.4
Coaker, G.5
-
76
-
-
79951639951
-
Specific threonine phosphorylation of a host target by two unrelated type III effectors activates a host innate immune receptor in plants
-
Chung E-H, da Cunha L, Wu A-J, Gao Z, Cherkis K, Afzal AJ, Mackey D, &, Dangl JL, (2011) Specific threonine phosphorylation of a host target by two unrelated type III effectors activates a host innate immune receptor in plants. Cell Host Microbe 9, 125-136.
-
(2011)
Cell Host Microbe
, vol.9
, pp. 125-136
-
-
Chung, E.-H.1
Da Cunha, L.2
Wu, A.-J.3
Gao, Z.4
Cherkis, K.5
Afzal, A.J.6
Mackey, D.7
Dangl, J.L.8
-
77
-
-
79951636212
-
A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor
-
Liu J, Elmore JM, Lin Z-JD, &, Coaker G, (2011) A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor. Cell Host Microbe 9, 137-146.
-
(2011)
Cell Host Microbe
, vol.9
, pp. 137-146
-
-
Liu, J.1
Elmore, J.M.2
Lin, Z.-J.3
Coaker, G.4
-
78
-
-
33750097480
-
Subterfuge and manipulation: Type III effector proteins of phytopathogenic bacteria
-
Grant SR, Fisher EJ, Chang JH, Mole BM, &, Dangl JL, (2006) Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria. Annu Rev Microbiol 60, 425-449.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 425-449
-
-
Grant, S.R.1
Fisher, E.J.2
Chang, J.H.3
Mole, B.M.4
Dangl, J.L.5
-
79
-
-
33751005592
-
NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis
-
Day B, Dahlbeck D, &, Staskawicz BJ, (2006) NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis. Plant Cell 18, 2782-2791.
-
(2006)
Plant Cell
, vol.18
, pp. 2782-2791
-
-
Day, B.1
Dahlbeck, D.2
Staskawicz, B.J.3
-
80
-
-
67649959828
-
RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack
-
doi: 10.1371/journal.pbio.1000139
-
Liu J, Elmore JM, Fuglsang AT, Palmgren MG, Staskawicz BJ, &, Coaker G, (2009) RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack. PLoS Biol 7, e1000139. doi: 10.1371/journal.pbio.1000139.
-
(2009)
PLoS Biol
, vol.7
-
-
Liu, J.1
Elmore, J.M.2
Fuglsang, A.T.3
Palmgren, M.G.4
Staskawicz, B.J.5
Coaker, G.6
-
81
-
-
79960957705
-
Independently evolved virulence effectors converge onto hubs in a plant immune system network
-
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, et al,. (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science. 333, 596-601.
-
(2011)
Science
, vol.333
, pp. 596-601
-
-
Mukhtar, M.S.1
Carvunis, A.R.2
Dreze, M.3
Epple, P.4
Steinbrenner, J.5
Moore, J.6
Tasan, M.7
Galli, M.8
Hao, T.9
Nishimura, M.T.10
-
82
-
-
76249117850
-
Pseudomonas syringae effector protein AvrB perturbs Arabidopsis hormone signaling by activating MAP kinase 4
-
Cui H, Wang Y, Xue L, Chu J, Yan C, Fu J, Chen M, Innes RW, &, Zhou J-M, (2010) Pseudomonas syringae effector protein AvrB perturbs Arabidopsis hormone signaling by activating MAP kinase 4. Cell Host Microbe 7, 164-175.
-
(2010)
Cell Host Microbe
, vol.7
, pp. 164-175
-
-
Cui, H.1
Wang, Y.2
Xue, L.3
Chu, J.4
Yan, C.5
Fu, J.6
Chen, M.7
Innes, R.W.8
Zhou, J.-M.9
-
83
-
-
79958029735
-
Evolution and disorder
-
Brown CJ, Johnson AK, Dunker AK, &, Daughdrill GW, (2011) Evolution and disorder. Curr Opin Struct Biol 21, 441-446.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 441-446
-
-
Brown, C.J.1
Johnson, A.K.2
Dunker, A.K.3
Daughdrill, G.W.4
-
84
-
-
38349134161
-
An E. Coli expression system optimized for della proteins
-
Sun XL, Frearson N, Kirk C, Jones WT, Harvey D, Rakonjac J, Foster T, &, Al-Samarrai T, (2008) An E. coli expression system optimized for DELLA proteins. Protein Expr Purif 58, 168-174.
-
(2008)
Protein Expr Purif
, vol.58
, pp. 168-174
-
-
Sun, X.L.1
Frearson, N.2
Kirk, C.3
Jones, W.T.4
Harvey, D.5
Rakonjac, J.6
Foster, T.7
Al-Samarrai, T.8
-
85
-
-
0027733616
-
Use of fast protein size-exclusion liquid-chromatography to study the unfolding of proteins which denature through the molten globule
-
Uversky VN, (1993) Use of fast protein size-exclusion liquid-chromatography to study the unfolding of proteins which denature through the molten globule. Biochemistry 32, 13288-13298.
-
(1993)
Biochemistry
, vol.32
, pp. 13288-13298
-
-
Uversky, V.N.1
-
86
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
Dyson HJ, &, Wright PE, (2002) Coupling of folding and binding for unstructured proteins. Curr Opin Struct Biol 12, 54-60.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
87
-
-
0026682931
-
Solution Conformations and aggregational properties of synthetic amyloid beta-peptides of Alzheimers-disease - Analysis of circular-dichroism spectra
-
Barrow CJ, Yasuda A, Kenny PTM, &, Zagorski MG, (1992) Solution Conformations and aggregational properties of synthetic amyloid beta-peptides of Alzheimers-disease-analysis of circular-dichroism spectra. J Mol Biol 225, 1075-1093.
-
(1992)
J Mol Biol
, vol.225
, pp. 1075-1093
-
-
Barrow, C.J.1
Yasuda, A.2
Kenny, P.T.M.3
Zagorski, M.G.4
-
88
-
-
13444273448
-
The universal protein resource (UniProt)
-
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang HZ, Lopez R, Magrane M, et al,. (2005) The universal protein resource (UniProt). Nucleic Acids Res 33, D154-D159.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.Z.8
Lopez, R.9
Magrane, M.10
|