N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors

Journal of Biological Chemistry

Volumn 285, Issue 15, 2010, Pages 11557-11571

  Sun, Xiaolin ^a   Jones, William T ^a   Harvey, Dawn ^a   Edwards, Patrick J B ^b   Pascal, Steven M ^b   Kirk, Christopher ^a,b   Considine, Thérèse ^c   Sheerin, David J ^b   Rakonjac, Jasna ^b   Oldfield, Christopher J ^d   Xue, Bin ^d   Dunker, A Keith ^d   Uversky, Vladimir N ^d,e  

^a THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

^b MASSEY UNIVERSITY   (New Zealand)

^c FONTERRA RESEARCH CENTRE   (New Zealand)

^d INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e INSTITUTE FOR BIOLOGICAL INSTRUMENTATION   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ACID RECEPTORS; CONFORMATIONAL CHANGE; CONVERGENCE POINTS; DELLA PROTEINS; ENVIRONMENTAL SIGNALS; GIBBERELLIC ACID; INDUCED DEGRADATION; INTRINSICALLY UNSTRUCTURED PROTEINS; N-TERMINAL DOMAINS; PHYSIOLOGICAL CONDITION; PLANT GROWTH; PROTEASOMES; UBIQUITIN;

ACIDS; BIOINFORMATICS; DEGRADATION; GENETIC ALGORITHMS; MOLECULAR BIOLOGY; MOLECULAR RECOGNITION; MONOCLONAL ANTIBODIES; ORDER DISORDER TRANSITIONS; PLANT LIFE EXTENSION;

PROTEINS;

DELLA PROTEIN; GIBBERELLIC ACID RECEPTOR; HORMONE RECEPTOR; MONOCLONAL ANTIBODY; PROTEASOME; REGULATOR PROTEIN; UBIQUITIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CLASSIFICATION; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; GROWTH INHIBITION; MOLECULAR RECOGNITION; MOUSE; NONHUMAN; PLANT GROWTH; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; RECEPTOR BINDING; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; ANTIBODIES, MONOCLONAL; ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; GIBBERELLINS; MOLECULAR SEQUENCE DATA; MUTATION; PLANT PROTEINS; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, CELL SURFACE; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION;

EID: 77951234309     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.027011     Document Type: Article

References (63)

1. Peng, J., Carol, P., Richards, D. E., King, K. E., Cowling, R. J., Murphy, G. P., and Harberd, N. P. (1997) Genes Dev. 11, 3194-3205
2. Sun, T. P., and Gubler, F. (2004) Annu. Rev. Plant Biol. 55, 197-223
3. Peng, J., Richards, D. E., Hartley, N. M., Murphy, G. P., Devos, K. M., Flintham, J. E., Beales, J., Fish, L. J., Worland, A. J., Pelica, F., Sudhakar, D., Christou, P., Snape, J. W., Gale, M. D., and Harberd, N. P. (1999) Nature 400, 256-261
4. Feng, S., Martinez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias-Pedraz, J. M., Kircher, S., Schäfer, E., Fu, X., Fan, L. M., and Deng, X. W. (2008) Nature 451, 475-479
5. de Lucas, M., Davière, J. M., Rodríguez-Falcón, M., Pontin, M., Iglesias-Pedraz, J. M., Lorrain, S., Fankhauser, C., Blázquez, M. A., Titarenko, E., and Prat, S. (2008) Nature 451, 480-484
6. Ueguchi-Tanaka, M., Ashikari, M., Nakajima, M., Itoh, H., Katoh, E., Kobayashi, M., Chow, T. Y., Hsing, Y. I., Kitano, H., Yamaguchi, I., and Matsuoka, M. (2005) Nature 437, 693-698
7. Nakajima, M., Shimada, A., Takashi, Y., Kim, Y. C., Park, S. H., Ueguchi-Tanaka, M., Suzuki, H., Katoh, E., Iuchi, S., Kobayashi, M., Maeda, T., Matsuoka, M., and Yamaguchi, I. (2006) Plant J. 46, 880-889
8. Murase, K., Hirano, Y., Sun, T. P., and Hakoshima, T. (2008) Nature 456, 459-463
9. Silverstone, A. L., Jung, H. S., Dill, A., Kawaide, H., Kamiya, Y., and Sun, T. P. (2001) Plant Cell 13, 1555-1566
10. McGinnis, K. M., Thomas, S. G., Soule, J. D., Strader, L. C., Zale, J. M., Sun, T. P., and Steber, C. M. (2003) Plant Cell 15, 1120-1130
11. Griffiths, J., Murase, K., Rieu, I., Zentella, R., Zhang, Z. L., Powers, S. J., Gong, F., Phillips, A. L., Hedden, P., Sun, T. P., and Thomas, S. G. (2006) Plant Cell 18, 3399-3414
12. Achard, P., Cheng, H., De Grauwe, L., Decat, J., Schoutteten, H., Moritz, T., Van Der Straeten, D., Peng, J., and Harberd, N. P. (2006) Science 311, 91-94
13. Navarro, L., Bari, R., Achard, P., Lisón, P., Nemri, A., Harberd, N. P., and Jones, J. D. (2008) Curr. Biol. 18, 650-655
14. Cao, D., Cheng, H., Wu, W., Soo, H. M., and Peng, J. (2006) Plant Physiol. 142, 509-525
15. Hou, X., Hu, W. W., Shen, L., Lee, L. Y., Tao, Z., Han, J. H., and Yu, H. (2008) Plant Physiol. 147, 1126-1142
16. Xie, H., Vucetic, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Uversky, V. N., and Obradovic, Z. (2007) J. Proteome Res. 6, 1882-1898
17. Vucetic, S., Xie, H., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Obradovic, Z., and Uversky, V. N. (2007) J. Proteome Res. 6, 1899-1916
18. Dunker, A. K., Obradovic, Z., Romero, P., Garner, E. C., and Brown, C. J. (2000) Genome Inform. Ser. Workshop Genome Inform. 11, 161-171
19. Iakoucheva, L. M., Brown, C. J., Lawson, J. D., Obradović, Z., and Dunker, A. K. (2002) J. Mol. Biol. 323, 573-584
20. Oldfield, C. J., Cheng, Y., Cortese, M. S., Brown, C. J., Uversky, V. N., and Dunker, A. K. (2005) Biochemistry 44, 1989-2000
21. Dunker, A. K., Lawson, J. D., Brown, C. J., Williams, R. M., Romero, P., Oh, J. S., Oldfield, C. J., Campen, A. M., Ratliff, C. M., Hipps, K. W., Ausio, J., Nissen, M. S., Reeves, R., Kang, C., Kissinger, C. R., Bailey, R. W., Griswold, M. D., Chiu, W., Garner, E. C., and Obradovic, Z. (2001) J. Mol. Graph. Model. 19, 26-59
22. Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., and Obradović, Z. (2002) Biochemistry 41, 6573-6582
23. Dyson, H. J., and Wright, P. E. (2002) Curr. Opin. Struct. Biol. 12, 54-60
24. Uversky, V. N. (2002) Eur. J. Biochem. 269, 2-12
25. Uversky, V. N. (2002) Protein Sci. 11, 739-756
26. Sun, X., Frearson, N., Kirk, C., Jones, W. T., Harvey, D., Rakonjac, J., Foster, T., and Al-Samarrai, T. (2008) Protein Expr. Purif. 58, 168-174
27. Koornneef, M., and Veen, J. H. (1980) Theor. Appl. Genet. 58, 257-263
28. Cheng, H., Qin, L., Lee, S., Fu, X., Richards, D. E., Cao, D., Luo, D., Harberd, N. P., and Peng, J. (2004) Development 131, 1055-1064
29. Barrow, C. J., Yasuda, A., Kenny, P. T., and Zagorski, M. G. (1992) J. Mol. Biol. 225, 1075-1093
30. Oldfield, C. J., Cheng, Y., Cortese, M. S., Romero, P., Uversky, V. N., and Dunker, A. K. (2005) Biochemistry 44, 12454-12470
31. Cheng Y., Oldfield, C. J., Meng, J., Romero, P., Uversky, V. N., and Dunker, A. K. (2007) Biochemistry 46, 13468-13477
32. Cole, C., Barber, J. D., and Barton, G. J. (2008) Nucleic Acids Res. 36, W197-W201
33. Johnson, W. C., Jr. (1988) Annu. Rev. Biophys. Biophys. Chem. 17, 145-166
34. Soulages, J. L., Kim, K., Walters, C., and Cushman, J. C. (2002) Plant Physiol. 128, 822-832
35. Radivojac, P., Iakoucheva, L. M., Oldfield, C. J., Obradovic, Z., Uversky, V. N., and Dunker, A. K. (2007) Biophys. J. 92, 1439-1456
36. Sickmeier, M., Hamilton, J. A., LeGall, T., Vacic, V., Cortese, M. S., Tantos, A., Szabo, B., Tompa, P., Chen, J., Uversky, V. N., Obradovic, Z., and Dunker, A. K. (2007) Nucleic Acids Res. 35, D786-D793
37. Uversky, V. N., Gillespie, J. R., and Fink, A. L. (2000) Proteins 41, 415-427
38. Romero, P., Obradovic, Z., Li, X., Garner, E. C., Brown, C. J., and Dunker, A. K. (2001) Proteins 42, 38-48
39. Schlessinger, A., Liu, J., and Rost, B. (2007) PLoS Comput. Biol. 3, 1335-1346
40. Mohan, A., Oldfield, C. J., Radivojac, P., Vacic, V., Cortese, M. S., Dunker, A. K., and Uversky, V. N. (2006) J. Mol. Biol. 362, 1043-1059
41. Deane, C. M., Salwiński, Ł., Xenarios, I., and Eisenberg, D. (2002) Mol. Cell Proteomics 1, 349-356
42. Allen, N. P., Patel, S. S., Huang, L., Chalkley, R. J., Burlingame, A., Lutzmann, M., Hurt, E. C., and Rexach, M. (2002) Mol. Cell Proteomics 1, 930-946
43. Crick, S. L., Jayaraman, M., Frieden, C., Wetzel, R., and Pappu, R. V. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 16764-16769
44. Chen, A. A., and Pappu, R. V. (2007) J. Phys. Chem. B 111, 11884-11887
45. Ueguchi-Tanaka, M., Nakajima, M., Katoh, E., Ohmiya, H., Asano, K., Saji, S., Hongyu, X., Ashikari, M., Kitano, H., Yamaguchi, I., and Matsuoka, M. (2007) Plant Cell 19, 2140-2155
46. Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., and Jones, D. T. (2004) J. Mol. Biol. 337, 635-645
47. Liu, J., Perumal, N. B., Oldfield, C. J., Su, E. W., Uversky, V. N., and Dunker, A. K. (2006) Biochemistry 45, 6873-6888
48. Uversky, V. N., Oldfield, C. J., and Dunker, A. K. (2005) J. Mol. Recognit. 18, 343-384
49. Dunker, A. K., Cortese, M. S., Romero, P., Iakoucheva, L. M., and Uversky, V. N. (2005) FEBS J. 272, 5129-5148
50. Gsponer, J., Futschik, M. E., Teichmann, S. A., and Babu, M. M. (2008) Science 322, 1365-1368
51. Uversky, V. N., and Dunker, A. K. (2008) Science 322, 1340-1341
52. Schwechheimer, C. (2008) Curr. Opin. Plant Biol. 11, 9-15
53. Silverstone, A. L., Tseng, T. S., Swain, S. M., Dill, A., Jeong, S. Y., Olszewski, N. E., and Sun, T. P. (2007) Plant Physiol. 143, 987-1000
54. Fu, X., Richards, D. E., Ait-Ali, T., Hynes, L. W., Ougham, H., Peng, J., and Harberd, N. P. (2002) Plant Cell 14, 3191-3200
55. Hussain, A., Cao, D., Cheng, H., Wen, Z., and Peng, J. (2005) Plant J. 44, 88-99
56. Fuxreiter, M., Simon, I., Friedrich, P., and Tompa, P. (2004) J. Mol. Biol. 338, 1015-1026
57. Vacic, V., Oldfield, C. J., Mohan, A., Radivojac, P., Cortese, M. S., Uversky, V. N., and Dunker, A. K. (2007) J. Proteome Res. 6, 2351-2366
58. Hua, Q. X., Jia, W. H., Bullock, B. P., Habener, J. F., and Weiss, M. A. (1998) Biochemistry 37, 5858-5866
59. Willige, B. C., Ghosh, S., Nill, C., Zourelidou, M., Dohmann, E. M., Maier, A., and Schwechheimer, C. (2007) Plant Cell 19, 1209-1220
60. Wen, C. K., and Chang, C. (2002) Plant Cell 14, 87-100
61. Tyler, L., Thomas, S. G., Hu, J., Dill, A., Alonso, J. M., Ecker, J. R., and Sun, T. P. (2004) Plant Physiol. 135, 1008-1019
62. Uversky, V. N. (1993) Biochemistry 32, 13288-13298
63. Xie, H., Vucetic, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Obradovic, Z., and Uversky, V. N. (2007) J. Proteome Res. 6, 1917-1932