Structural connectivity based whole brain modelling in epilepsy

Journal of Neuroscience Methods

Volumn 236, Issue , 2014, Pages 51-57

  Taylor, Peter Neal ^a   Kaiser, Marcus ^a   Dauwels, Justin ^b  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

Computational model; Connectome; Diffusion weighted imaging; Dynamics; Epilepsy; Network

Indexed keywords

BRAIN DEPTH STIMULATION; BRAIN FUNCTION; COMPUTER MODEL; CONNECTOME; DIFFUSION WEIGHTED IMAGING; EPILEPSY; HUMAN; PRIORITY JOURNAL; REVIEW; WHITE MATTER; IN VIVO STUDY; NEUROIMAGING; NEUROSURGERY; BIOLOGICAL MODEL; BRAIN; BRAIN MAPPING; COMPUTER SIMULATION; NERVE TRACT; PATHOPHYSIOLOGY; PROCEDURES;

BRAIN; BRAIN MAPPING; COMPUTER SIMULATION; DIFFUSION MAGNETIC RESONANCE IMAGING; EPILEPSY; HUMANS; MODELS, NEUROLOGICAL; NEURAL PATHWAYS;

EID: 84906703468     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2014.08.010     Document Type: Review

References (93)

1. Alstott J., Breakspear M., Hagmann P., Cammoun L., Sporns O. Modeling the impact of lesions in the human brain. PLoS Comput Biol 2009, 5:e1000408.
2. Avanzini G., Manganotti P., Meletti S., Moshe S.L., Panzica F., Wolf P., Capovilla G. The system epilepsies: a pathophysiological hypothesis. Epilepsia 2012, 53:771-778.
3. Avoli M. A brief history on the oscillating roles of thalamus and cortex in absence seizures. Epilepsia 2012, 53:779-789.
4. Baier G., Goodfellow M., Taylor P., Wang Y., Garry D. The importance of modelling epileptic seizure dynamics as spatio-temporal patterns. Front Physiol 2012, 3:281.
5. Bakouie F., Gharibzadeh S., Towhidkhah F. Managing epileptic seizures by controlling the brain driver nodes: a complex network view. Front Bioeng Biotechnol 2013, 1:21.
6. Benjamin O., Fitzgerald T., Ashwin P., Tsaneva-Atanasova K., Chowdhury F., Richardson M., Terry J. A phenomenological model of seizure initiation suggests net-work structure may explain seizure frequency in idiopathic generalised epilepsy. J Math Neurosci 2012, 2:1.
7. Berényi A., Belluscio M., Mao D., Buzsáki G. Closed-loop control of epilepsy by transcranial electrical stimulation. Science 2012, 337:735-737.
8. Bernasconi N., Duchesne S., Janke A., Lerch J., Collins D., Bernasconi A. Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy. NeuroImage 2004, 23:717-723.
9. Bernhardt B.C., Chen Z., He Y., Evans A.C., Bernasconi N. Graph-theoretical analysis reveals disrupted small-world organization of cortical thickness correlation networks in temporal lobe epilepsy. Cereb Cortex 2011, 21:2147-2157.
10. Bernhardt B.C., Worsley K.J., Besson P., Concha L., Lerch J.P., Evans A.C., Bernasconi N. Mapping limbic network organization in temporal lobe epilepsy using morphometric correlations: insights on the relation between mesiotemporal connectivity and cortical atrophy. Neuroimage 2008, 42:515-524.
11. Bonilha L., Helpern J.A., Sainju R., Nesland T., Edwards J.C., Glazier S.S., Tabesh A. Presurgical connectome and postsurgical seizure control in temporal lobe epilepsy. Neurology 2013, 81:1704-1710.
12. Bonilha L., Nesland T., Martz G.U., Joseph J.E., Spampinato M.V., Edwards J.C., Tabesh A. Medial temporal lobe epilepsy is associated with neuronal fibre loss and paradoxical increase in structural connectivity of limbic structures. J Neurol Neurosurg Psychiatr 2012, 83:903-909.
13. Bower R.S., Wirrell E., Nwojo M., Wetjen N.M., Marsh W.R., Meyer F.B. Seizure outcomes after corpus callosotomy for drop attacks. Neurosurgery 2013, 73:993-1000.
14. Breakspear M., Heitmann S., Daffertshofer A. Generative models of cortical oscillations: neurobiological implications of the kuramoto model. Front Hum Neurosci 2010, 4.
15. Breakspear M., Roberts J., Terry J., Rodrigues S., Mahant N., Robinson P. A unifying explanation of primary generalized seizures through nonlinear brain modeling and bifurcation analysis. Cereb Cortex 2006, 16:1296.
16. Cabral J., Hugues E., Kringelbach M.L., Deco G. Modeling the outcome of structural disconnection on resting-state functional connectivity. NeuroImage 2012, 62:1342-1353.
17. Chiang S., Haneef Z. Graph theory findings in the pathophysiology of temporal lobe epilepsy. Clin Neurophysiol 2014, 125:1295-1305.
18. Ching S., Brown E.N., Kramer M.A. Distributed control in a mean-field cortical network model: implications for seizure suppression. Phys Rev E 2012, 86:021920.
19. Daducci A., Gerhard S., Griffa A., Lemkaddem A., Cammoun L., Gigandet X., Meuli R., Hagmann P., Thiran J.P. The connectome mapper: an open-source processing pipeline to map connectomes with mri. PLoS ONE 2012, 7:e48121.
20. DeCarli C., Hatta J., Fazilat S., Fazilat S., Gaillard W., Theodore W.H. Extratemporal atrophy in patients with complex partial seizures of left temporal origin. Ann Neurol 1998, 43:41-45.
21. Deco G., Jirsa V., McIntosh A., Sporns O., Kötter R. Key role of coupling, delay, and noise in resting brain fluctuations. Proc Natl Acad Sci 2009, 106:10302.
22. Deco G., Jirsa V.K., McIntosh A.R. Resting brains never rest: computational insights into potential cognitive architectures. Trends Neurosci 2013, 36:268-274.
23. Deco G., Jirsa V.K., Robinson P.A., Breakspear M., Friston K. The dynamic brain: from spiking neurons to neural masses and cortical fields. PLoS Comput Biol 2008, 4:e1000092.
24. Engel J., Thompson P.M., Stern J.M., Staba R.J., Bragin A., Mody I., et al. Connectomics and epilepsy. Curr Opin Neurol 2013, 26:186-194.
25. Felleman D.J., Van Essen D.C. Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1991, 1:1-47.
26. Fox M.D., Snyder A.Z., Vincent J.L., Corbetta M., Van Essen D.C., Raichle M.E. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A 2005, 102:9673-9678.
27. Friston K., Harrison L., Penny W. Dynamic causal modelling. Neuroimage 2003, 19:1273-1302.
28. Ghosh A., Rho Y., McIntosh A., Kötter R., Jirsa V. Noise during rest enables the exploration of the brain's dynamic repertoire. PLoS Comput Biol 2008, 4:e1000196.
29. Gloor P. Generalized cortico-reticular epilepsies some considerations on the pathophysiology of generalized bilaterally synchronous spike and wave discharge. Epilepsia 1968, 9:249-263.
30. Goodfellow M., Schindler K., Baier G. Intermittent spike-wave dynamics in a heterogeneous, spatially extended neural mass model. Neuroimage 2011, 55:920-932.
31. Goodfellow M., Taylor P., Wang Y., Garry D., Baier G. Modelling the role of tissue heterogeneity in epileptic rhythms. Eur J Neurosci 2012, 36:2178-2187.
32. Hagmann P., Cammoun L., Gigandet X., Meuli R., Honey C.J., Wedeen V.J., Sporns O. Mapping the structural core of human cerebral cortex. PLoS Biol 2008, 6:e159.
33. Honey C., Sporns O., Cammoun L., Gigandet X., Thiran J.P., Meuli R., Hagmann P. Predicting human resting-state functional connectivity from structural connectivity. Proc Natl Acad Sci 2009, 106:2035-2040.
34. Honey C.J., Kötter R., Breakspear M., Sporns O. Network structure of cerebral cortex shapes functional connectivity on multiple time scales. Proc Natl Acad Sci 2007, 104:10240-10245.
35. Honey C.J., Thivierge J.P., Sporns O. Can structure predict function in the human brain?. NeuroImage 2010, 52:766-776.
36. Jbabdi S., Johansen-Berg H. Tractography: where do we go from here?. Brain Connect 2011, 1:169-183.
37. Jirsa V.K., Stacey W.C., Quilichini P.P., Ivanov A.I., Bernard C. On the nature of seizure dynamics. Brain 2014, 137(8):2210-2230.
38. Kaiser M. A tutorial in connectome analysis: topological and spatial features of brain networks. Neuroimage 2011, 57:892-907.
39. Kaiser M. The potential of the human connectome as a biomarker of brain disease. Front Hum Neurosci 2013, 7.
40. Kaiser M., Goerner M., Hilgetag C.C. Criticality of spreading dynamics in hierarchical cluster networks without inhibition. N J Phys 2007, 9:110.
41. Kalitzin S., Velis D., Lopes da Silva F. Stimulation-based anticipation and control of state transitions in the epileptic brain. Epilepsy Behav 2010, 17:310-323.
42. Keller S.S., Roberts N. Voxel-based morphometry of temporal lobe epilepsy: an introduction and review of the literature. Epilepsia 2008, 49:741-757.
43. Kramer M.A., Cash S.S. Epilepsy as a disorder of cortical network organization. Neurosci 2012, 18:360-372.
44. Kramer M.A., Lopour B.A., Kirsch H.E., Szeri A.J. Bifurcation control of a seizing human cortex. Phys Rev E 2006, 73:041928.
45. Latora V., Marchiori M. Efficient behavior of small-world networks. Phys Rev Lett 2001, 87:198701.
46. Leon P.S., Knock S.A., Woodman M.M., Domide L., Mersmann J., McIntosh A.R., Jirsa V. The virtual brain: a simulator of primate brain network dynamics. Front Neuroinf 2013, 7.
47. Lim S., Han C.E., Uhlhaas P.J., Kaiser M. Preferential detachment during human brain development: age- and sex-specific structural connectivity in diffusion tensor imaging (DTI) data. Cereb Cortex 2013, bht333.
48. Liu Y., Slotine J., Barabási A. Controllability of complex networks. Nature 2011, 473:167-173.
49. Logothetis N., Pauls J., Augath M., Trinath T., Oeltermann A., et al. Neurophysiological investigation of the basis of the fmri signal. Nature 2001, 412:150-157.
50. Lopes Da Silva F., Blanes W., Kalitzin S., Parra J., Suffczynski P., Velis D. Epilepsies as dynamical diseases of brain systems: basic models of the transition between normal and epileptic activity. Epilepsia 2003, 44:72-83.
51. Lytton W. Computer modelling of epilepsy. Nat Rev Neurosci 2008, 9:626-637.
52. McGill M.L., Devinsky O., Kelly C., Milham M., Castellanos F.X., Quinn B.T., DuBois J., Young J.R., Carlson C., French J., et al. Default mode network abnormalities in idiopathic generalized epilepsy. Epilepsy Behav 2012, 23:353-359.
53. Meade C.E., Bowden S.C., Whelan G., Cook M.J. Rhinal cortex asymmetries in patients with mesial temporal sclerosis. Seizure 2008, 17:234-246.
54. Meeren H., Pijn J., Van Luijtelaar E., Coenen A., Lopes da Silva F. Cortical focus drives widespread corticothalamic networks during spontaneous absence seizures in rats. J Neurosci 2002, 22:1480.
55. Migliore M., Morse T.M., Davison A.P., Marenco L., Shepherd G.M., Hines M.L. ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 2003, 1:135-139.
56. Moeller F., LeVan P., Muhle H., Stephani U., Dubeau F., Siniatchkin M., Gotman J. Absence seizures: individual patterns revealed by EEG-fMRI. Epilepsia 2010, 51:2000-2010.
57. Ng W.H., Valiante T. Lateral temporal lobectomy with hippocampal disconnection as an alternative surgical technique for temporal lobe epilepsy. J Clin Neurosci 2010, 17:634-635.
58. Osorio I., Frei M. Seizure abatement with single dc pulses: is phase resetting at play?. Int J Neural Syst 2009, 19:149-L.
59. Parker G., Haroon H., Wheeler-Kingshott C. A framework for a streamline-based probabilistic index of connectivity (pico) using a structural interpretation of mri diffusion measurements. J Magn Reson Imaging 2003, 18:242-254.
60. Pavone A., Niedermeyer E. Absence seizures and the frontal lobe. Clin EEG Neurosci 2000, 31:153-156.
61. Pinault D., O'Brien T. Cellular and network mechanisms of genetically-determined absence seizures. Thalamus Relat Syst 2005, 3:181.
62. Pitkänen A., Tuunanen J., Kälviä inen R., Partanen K., Salmenperä T. Amygdala damage in experimental and human temporal lobe epilepsy. Epilepsy Res 1998, 32:233-253.
63. Raj A., Kuceyeski A., Weiner M. A network diffusion model of disease progression in dementia. Neuron 2012, 73:1204-1215.
64. Rajna P., Lona C. Sensory stimulation for inhibition of epileptic seizures. Epilepsia 1989, 30:168-174.
65. Richardson M.P. Large scale brain models of epilepsy: dynamics meets connectomics. J Neurol Neurosurg Psychiatr 2012, 83:1238-1248.
66. Robinson P.A., Rennie C.J., Rowe D.L. Dynamics of large-scale brain activity in normal arousal states and epileptic seizures. Phys Rev E 2002, 65:041924.
67. Rubinov M., Sporns O. Complex network measures of brain connectivity: uses and interpretations. NeuroImage 2010, 52:1059-1069.
68. Ruths J., Ruths D. Control profiles of complex networks. Science 2014, 343:1373-1376.
69. Ruths J., Taylor P.N., Dauwels J. Optimal control of an epileptic neural population model. Proceedings of the international federation of automatic control 2014.
70. Saillet S., Gharbi S., Charvet G., Deransart C., Guillemaud R., Depaulis A., David O. Neural adaptation to responsive stimulation: a comparison of auditory and deep brain stimulation in a rat model of absence epilepsy. Brain Stimul 2012.
71. de Salvo M.N., Douw L., Tanaka N., Reinsberger C., Stufflebeam S.M. Altered structural connectome in temporal lobe epilepsy. Radiology 2014, 270:842-848. 10.1148/radiol.13131044.
72. Sinha N., Dauwels J., Wang Y., Taylor P. An in silico approach for pre-surgical evaluation of an epileptic cortex. IEEE Proc EMBS 2014.
73. Stanley M.L., Moussa M.N., Paolini B.M., Lyday R.G., Burdette J.H., Laurienti P.J. Defining nodes in complex brain networks. Front Comput Neurosci 2013, 7.
74. Stephan K., Kamper L., Bozkurt A., Burns G., Young M., Kötter R. Advanced database methodology for the collation of connectivity data on the macaque brain (CoCoMac). Philos Trans R Soc Lond Ser B Biol Sci 2001, 356:1159.
75. Suffczynski P., Kalitzin S., Lopes Da Silva F. Dynamics of non-convulsive epileptic phenomena modeled by a bistable neuronal network. Neuroscience 2004, 126:467-484.
76. Tass P.A. A model of desynchronizing deep brain stimulation with a demand-controlled coordinated reset of neural subpopulations. Biol Cybern 2003, 89:81-88.
77. Taylor P., Baier G. A spatially extended model for macroscopic spike-wave discharges. J Comput Neurosci 2011, 31:679-684.
78. Taylor P.N., Baier G., Cash S.S., Dauwels J., Slotine J.J., Wang Y. A model of stimulus induced epileptic spike-wave discharges. IEEE Symp Ser Comput Intell 2013.
79. Taylor P.N., Goodfellow M., Wang Y., Baier G. Towards a large-scale model of patient-specific epileptic spike-wave discharges. Biol Cybern 2013, 107:83-94.
80. Terry J.R., Benjamin O., Richardson M.P. Seizure generation: The role of nodes and networks. Epilepsia 2012, 53:e166-e169.
81. Tzourio-Mazoyer N., Landeau B., Papathanassiou D., Crivello F., Etard O., Delcroix N., Mazoyer B., Joliot M. Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain. Neuroimage 2002, 15:273-289.
82. Van Essen D.C. Cartography and connectomes. Neuron 2013, 80:775-790.
83. Wang Y., Goodfellow M., Taylor P., Baier G. Phase space approach for modeling of epileptic dynamics. Phys Rev E 2012, 85:061918.
84. Wang Y., Goodfellow M., Taylor P.N., Baier G. Dynamic mechanisms of neocortical focal seizure onset. PLoS Comput Biol 2014, 10(8):e1003787.
85. Wang Y., Taylor P.N., Baier G. Computational modelling of micro-seizures and focal seizure onset. BMC Neurosci 2013, 14:P14.
86. Watts D.J., Strogatz S.H. Collective dynamics of 'small-world' networks. Nature 1998, 393:440-442.
87. Wedeen V.J., Wang R., Schmahmann J.D., Benner T., Tseng W., Dai G., Pandya D., Hagmann P., D'Arceuil H., de Crespigny A.J. Diffusion spectrum magnetic resonance imaging (dsi) tractography of crossing fibers. NeuroImage 2008, 41:1267-1277.
88. Wendling F., Bartolomei F., Bellanger J., Chauvel P. Epileptic fast activity can be explained by a model of impaired GABAergic dendritic inhibition. Eur J Neurosci 2002, 15:1499-1508.
89. Wilson H., Cowan J. Excitatory and inhibitory interactions in localized populations of model neurons. Biophys J 1972, 12:1-24.
90. Woodman M.M., Pezard L., Domide L., Knock S.A., Sanz-Leon P., Mersmann J., McIntosh A.R., Jirsa V. Integrating neuroinformatics tools in thevirtualbrain. Front Neuroinf 2014, 8.
91. Xue K., Luo C., Zhang D., Yang T., Li J., Gong D., Chen L., Medina Y.I., Gotman J., Zhou D., et al. Diffusion tensor tractography reveals disrupted structural connectivity in childhood absence epilepsy. Epilepsy Res 2014, 108:125-138.
92. Yan B., Li P. The emergence of abnormal hypersynchronization in the anatomical structural network of human brain. NeuroImage 2013, 65:34-51.
93. Zhang Z., Liao W., Chen H., Mantini D., Ding J., Xu Q., Wang Z., Yuan C., Chen G., Jiao Q., et al. Altered functional-structural coupling of large-scale brain networks in idiopathic generalized epilepsy. Brain 2011, 134:2912-2928.