-
1
-
-
84877825351
-
Regulatory RNAs and target mRNA decay in prokaryotes
-
PMID:23500183
-
Lalaouna D, Simoneau-Roy M, Lafontaine D, Massé E. Regulatory RNAs and target mRNA decay in prokaryotes. Biochim Biophys Acta 2013; 1829:742-7; PMID:23500183; http://dx.doi.org/10.1016/j.bbagrm.2013.02.013
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 742-747
-
-
Lalaouna, D.1
Simoneau-Roy, M.2
Lafontaine, D.3
Massé, E.4
-
2
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
PMID:21925377
-
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011; 43:880-91; PMID:21925377; http://dx.doi.org/10.1016/j.molcel.2011.08.022
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
3
-
-
33746553370
-
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq
-
PMID:16859494
-
Kawamoto H, Koide Y, Morita T, Aiba H. Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq. Mol Microbiol 2006; 61:1013-22; PMID:16859494; http://dx.doi.org/10.1111/j.1365- 2958.2006.05288.x
-
(2006)
Mol Microbiol
, vol.61
, pp. 1013-1022
-
-
Kawamoto, H.1
Koide, Y.2
Morita, T.3
Aiba, H.4
-
4
-
-
57149111586
-
Small RNA binding to 5′ mRNA coding region inhibits translational initiation
-
PMID:19111662
-
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J. Small RNA binding to 5′ mRNA coding region inhibits translational initiation. Mol Cell 2008; 32:827-37; PMID:19111662; http://dx.doi.org/10.1016/j.molcel.2008.10.027
-
(2008)
Mol Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
5
-
-
78649346987
-
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica
-
PMID:20979336
-
Balbontín R, Fiorini F, Figueroa-Bossi N, Casadesús J, Bossi L. Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica. Mol Microbiol 2010; 78:380-94; PMID:20979336; http://dx.doi.org/10.1111/j.1365-2958.2010.07342.x
-
(2010)
Mol Microbiol
, vol.78
, pp. 380-394
-
-
Balbontín, R.1
Fiorini, F.2
Figueroa-Bossi, N.3
Casadesús, J.4
Bossi, L.5
-
6
-
-
84858867080
-
The csgD mRNA as a hub for signal integration via multiple small RNAs
-
PMID:22414234
-
Boehm A, Vogel J. The csgD mRNA as a hub for signal integration via multiple small RNAs. Mol Microbiol 2012; 84:1-5; PMID:22414234; http://dx.doi.org/10.1111/j.1365-2958.2012.08033.x
-
(2012)
Mol Microbiol
, vol.84
, pp. 1-5
-
-
Boehm, A.1
Vogel, J.2
-
7
-
-
80051929071
-
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
-
PMID:21696468
-
Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JCD, Vogel J. Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 2011; 81:1144-65; PMID:21696468; http://dx.doi.org/10.1111/j.1365-2958.2011.07751.x
-
(2011)
Mol Microbiol
, vol.81
, pp. 1144-1165
-
-
Sharma, C.M.1
Papenfort, K.2
Pernitzsch, S.R.3
Mollenkopf, H.J.4
Hinton, J.C.D.5
Vogel, J.6
-
8
-
-
84883772639
-
Comparative genomics boosts target prediction for bacterial small RNAs
-
PMID:23980183
-
Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J. Comparative genomics boosts target prediction for bacterial small RNAs. Proc Natl Acad Sci U S A 2013; 110:E3487-96; PMID:23980183; http://dx.doi.org/10.1073/pnas.1303248110
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
-
-
Wright, P.R.1
Richter, A.S.2
Papenfort, K.3
Mann, M.4
Vogel, J.5
Hess, W.R.6
Backofen, R.7
Georg, J.8
-
9
-
-
0024365785
-
Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA
-
PMID:2477663
-
Bouché F, Bouché JP. Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA. Mol Microbiol 1989; 3:991-4; PMID:2477663; http://dx.doi.org/10.1111/j.1365- 2958.1989.tb00249.x
-
(1989)
Mol Microbiol
, vol.3
, pp. 991-994
-
-
Bouché, F.1
Bouché, J.P.2
-
10
-
-
0034625237
-
6S RNA regulates E. coli RNA polymerase activity
-
PMID:10892648
-
Wassarman KM, Storz G. 6S RNA regulates E. coli RNA polymerase activity. Cell 2000; 101:613-23; PMID:10892648; http://dx.doi.org/10.1016/S0092-8674(00) 80873-9
-
(2000)
Cell
, vol.101
, pp. 613-623
-
-
Wassarman, K.M.1
Storz, G.2
-
11
-
-
84867095346
-
Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
-
PMID:22988125
-
Mank NN, Berghoff BA, Hermanns YN, Klug G. Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. Proc Natl Acad Sci U S A 2012; 109:16306-11; PMID:22988125; http://dx.doi.org/10.1073/pnas.1207067109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 16306-16311
-
-
Mank, N.N.1
Berghoff, B.A.2
Hermanns, Y.N.3
Klug, G.4
-
12
-
-
0032531720
-
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
-
PMID:9774350
-
Altuvia S, Zhang A, Argaman L, Tiwari A, Storz G. The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J 1998; 17:6069-75; PMID:9774350; http://dx.doi.org/10.1093/emboj/17.20. 6069
-
(1998)
EMBO J
, vol.17
, pp. 6069-6075
-
-
Altuvia, S.1
Zhang, A.2
Argaman, L.3
Tiwari, A.4
Storz, G.5
-
13
-
-
84888363237
-
Small RNA-mediated regulation of hostpathogen interactions
-
PMID:23958954
-
Harris JF, Micheva-Viteva S, Li N, Hong-Geller E. Small RNA-mediated regulation of hostpathogen interactions. Virulence 2013; 4:785-95; PMID:23958954; http://dx.doi.org/10.4161/viru.26119
-
(2013)
Virulence
, vol.4
, pp. 785-795
-
-
Harris, J.F.1
Micheva-Viteva, S.2
Li, N.3
Hong-Geller, E.4
-
14
-
-
78650532236
-
Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA
-
PMID:21059903
-
Papenfort K, Bouvier M, Mika F, Sharma CM, Vogel J. Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A 2010; 107:20435-40; PMID:21059903; http://dx.doi.org/ 10.1073/pnas.1009784107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 20435-20440
-
-
Papenfort, K.1
Bouvier, M.2
Mika, F.3
Sharma, C.M.4
Vogel, J.5
-
15
-
-
3142564584
-
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
-
PMID:15242645
-
Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, Bassler BL. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 2004; 118:69-82; PMID:15242645; http://dx.doi.org/10.1016/j.cell.2004.06.009
-
(2004)
Cell
, vol.118
, pp. 69-82
-
-
Lenz, D.H.1
Mok, K.C.2
Lilley, B.N.3
Kulkarni, R.V.4
Wingreen, N.S.5
Bassler, B.L.6
-
16
-
-
84881478217
-
Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation
-
PMID:23838640
-
Shao Y, Feng L, Rutherford ST, Papenfort K, Bassler BL. Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation. EMBO J 2013; 32:2158-71; PMID:23838640; http://dx.doi.org/10.1038/ emboj.2013.155
-
(2013)
EMBO J
, vol.32
, pp. 2158-2171
-
-
Shao, Y.1
Feng, L.2
Rutherford, S.T.3
Papenfort, K.4
Bassler, B.L.5
-
17
-
-
0037899184
-
A novel sRNA component of the carbon storage regulatory system of Escherichia coli
-
PMID:12694612
-
Weilbacher T, Suzuki K, Dubey AK, Wang X, Gudapaty S, Morozov I, Baker CS, Georgellis D, Babitzke P, Romeo T. A novel sRNA component of the carbon storage regulatory system of Escherichia coli. Mol Microbiol 2003; 48:657-70; PMID:12694612; http://dx.doi.org/10.1046/j.1365-2958.2003.03459.x
-
(2003)
Mol Microbiol
, vol.48
, pp. 657-670
-
-
Weilbacher, T.1
Suzuki, K.2
Dubey, A.K.3
Wang, X.4
Gudapaty, S.5
Morozov, I.6
Baker, C.S.7
Georgellis, D.8
Babitzke, P.9
Romeo, T.10
-
18
-
-
79958838355
-
Circuitry linking the Csr and stringent response global regulatory systems
-
PMID:21488981
-
Edwards AN, Patterson-Fortin LM, Vakulskas CA, Mercante JW, Potrykus K, Vinella D, Camacho MI, Fields JA, Thompson SA, Georgellis D, et al. Circuitry linking the Csr and stringent response global regulatory systems. Mol Microbiol 2011; 80:1561-80; PMID:21488981; http://dx.doi.org/10.1111/j.1365-2958.2011. 07663.x
-
(2011)
Mol Microbiol
, vol.80
, pp. 1561-1580
-
-
Edwards, A.N.1
Patterson-Fortin, L.M.2
Vakulskas, C.A.3
Mercante, J.W.4
Potrykus, K.5
Vinella, D.6
Camacho, M.I.7
Fields, J.A.8
Thompson, S.A.9
Georgellis, D.10
-
19
-
-
84876234571
-
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
-
PMID:23582330
-
Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J. Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell 2013; 153:426-37; PMID:23582330; http://dx.doi.org/10.1016/j.cell.2013.03. 003
-
(2013)
Cell
, vol.153
, pp. 426-437
-
-
Papenfort, K.1
Sun, Y.2
Miyakoshi, M.3
Vanderpool, C.K.4
Vogel, J.5
-
20
-
-
84874881006
-
Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA
-
PMID:23475961
-
Göpel Y, Papenfort K, Reichenbach B, Vogel J, Görke B. Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA. Genes Dev 2013; 27:552-64; PMID:23475961; http://dx.doi.org/10.1101/gad.210112.112
-
(2013)
Genes Dev
, vol.27
, pp. 552-564
-
-
Göpel, Y.1
Papenfort, K.2
Reichenbach, B.3
Vogel, J.4
Görke, B.5
-
21
-
-
84886004932
-
Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli
-
PMID:23873911
-
Sun Y, Vanderpool CK. Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli. J Bacteriol 2013; 195:4804-15; PMID:23873911; http://dx.doi.org/10.1128/JB.00722-13
-
(2013)
J Bacteriol
, vol.195
, pp. 4804-4815
-
-
Sun, Y.1
Vanderpool, C.K.2
-
22
-
-
0033854238
-
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
-
PMID:10972807
-
Urbanowski ML, Stauffer LT, Stauffer GV. The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 2000; 37:856-68; PMID:10972807; http://dx.doi.org/10.1046/j.1365-2958.2000.02051.x
-
(2000)
Mol Microbiol
, vol.37
, pp. 856-868
-
-
Urbanowski, M.L.1
Stauffer, L.T.2
Stauffer, G.V.3
-
23
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
PMID:17974919
-
Sharma CM, Darfeuille F, Plantinga TH, Vogel J. A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev 2007; 21:2804-17; PMID:17974919; http://dx.doi.org/10.1101/gad.447207
-
(2007)
Genes Dev
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
24
-
-
61449251662
-
Role of the sRNA GcvB in regulation of cycA in Escherichia coli
-
PMID:19118351
-
Pulvermacher SC, Stauffer LT, Stauffer GV. Role of the sRNA GcvB in regulation of cycA in Escherichia coli. Microbiology 2009; 155:106-14; PMID:19118351; http://dx.doi.org/10.1099/mic.0.023598-0
-
(2009)
Microbiology
, vol.155
, pp. 106-114
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
25
-
-
14844284580
-
A small bacterial RNA regulates a putative ABC transporter
-
PMID:15618228
-
Antal M, Bordeau V, Douchin V, Felden B. A small bacterial RNA regulates a putative ABC transporter. J Biol Chem 2005; 280:7901-8; PMID:15618228; http://dx.doi.org/10.1074/jbc.M413071200
-
(2005)
J Biol Chem
, vol.280
, pp. 7901-7908
-
-
Antal, M.1
Bordeau, V.2
Douchin, V.3
Felden, B.4
-
26
-
-
79954421372
-
Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein
-
PMID:21320185
-
Wilms I, Voss B, Hess WR, Leichert LI, Narberhaus F. Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein. Mol Microbiol 2011; 80:492-506; PMID:21320185; http://dx.doi.org/10.1111/j.1365-2958.2011. 07589.x
-
(2011)
Mol Microbiol
, vol.80
, pp. 492-506
-
-
Wilms, I.1
Voss, B.2
Hess, W.R.3
Leichert, L.I.4
Narberhaus, F.5
-
27
-
-
0033977101
-
Families of transmembrane sugar transport proteins
-
PMID:10692148
-
Saier MH Jr. Families of transmembrane sugar transport proteins. Mol Microbiol 2000; 35:699-710; PMID:10692148; http://dx.doi.org/10.1046/j.1365- 2958.2000.01759.x
-
(2000)
Mol Microbiol
, vol.35
, pp. 699-710
-
-
Saier Jr., M.H.1
-
28
-
-
3943062954
-
ATP-binding cassette transporters in bacteria
-
PMID:15189142
-
Davidson AL, Chen J. ATP-binding cassette transporters in bacteria. Annu Rev Biochem 2004; 73:241-68; PMID:15189142; http://dx.doi.org/10.1146/annurev. biochem.73.011303.073626
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 241-268
-
-
Davidson, A.L.1
Chen, J.2
-
29
-
-
0035024005
-
Bacterial ABC transporters of amino acids
-
PMID:11421273
-
Hosie AH, Poole PS. Bacterial ABC transporters of amino acids. Res Microbiol 2001; 152:259-70; PMID:11421273; http://dx.doi.org/10.1016/S0923- 2508(01)01197-4
-
(2001)
Res Microbiol
, vol.152
, pp. 259-270
-
-
Hosie, A.H.1
Poole, P.S.2
-
30
-
-
70349906229
-
Regulatory RNAs in prokaryotes: Here, there and everywhere
-
PMID:19732342
-
Narberhaus F, Vogel J. Regulatory RNAs in prokaryotes: here, there and everywhere. Mol Microbiol 2009; 74:261-9; PMID:19732342; http://dx.doi.org/10. 1111/j.1365-2958.2009.06869.x
-
(2009)
Mol Microbiol
, vol.74
, pp. 261-269
-
-
Narberhaus, F.1
Vogel, J.2
-
31
-
-
77952157242
-
A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon
-
PMID:20444087
-
Gimpel M, Heidrich N, Mäder U, Krügel H, Brantl S. A dual-function sRNA from B. subtilis : SR1 acts as a peptide encoding mRNA on the gapA operon. Mol Microbiol 2010; 76:990-1009; PMID:20444087; http://dx.doi.org/10.1111/j.1365-2958.2010.07158.x
-
(2010)
Mol Microbiol
, vol.76
, pp. 990-1009
-
-
Gimpel, M.1
Heidrich, N.2
Mäder, U.3
Krügel, H.4
Brantl, S.5
-
32
-
-
73849103559
-
An overview of RNAs with regulatory functions in gram-positive bacteria
-
PMID:19859665
-
Romby P, Charpentier E. An overview of RNAs with regulatory functions in gram-positive bacteria. Cell Mol Life Sci 2010; 67:217-37; PMID:19859665; http://dx.doi.org/10.1007/s00018-009-0162-8
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 217-237
-
-
Romby, P.1
Charpentier, E.2
-
33
-
-
33646471951
-
An internal antisense RNA regulates expression of the photosynthesis gene isiA
-
PMID:16636284
-
Dühring U, Axmann IM, Hess WR, Wilde A. An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A 2006; 103:7054-8; PMID:16636284; http://dx.doi.org/10.1073/pnas.0600927103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 7054-7058
-
-
Dühring, U.1
Axmann, I.M.2
Hess, W.R.3
Wilde, A.4
-
34
-
-
84870600743
-
An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains
-
PMID:22965121
-
Jäger D, Pernitzsch SR, Richter AS, Backofen R, Sharma CM, Schmitz RA. An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains. Nucleic Acids Res 2012; 40:10964-79; PMID:22965121; http://dx.doi.org/10.1093/nar/gks847
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10964-10979
-
-
Jäger, D.1
Pernitzsch, S.R.2
Richter, A.S.3
Backofen, R.4
Sharma, C.M.5
Schmitz, R.A.6
-
35
-
-
84884695481
-
Small RNA sX13: A multifaceted regulator of virulence in the plant pathogen Xanthomonas
-
PMID:24068933
-
Schmidtke C, Abendroth U, Brock J, Serrania J, Becker A, Bonas U. Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas. PLoS Pathog 2013; 9:e1003626; PMID:24068933; http://dx.doi.org/10. 1371/journal.ppat.1003626
-
(2013)
PLoS Pathog
, vol.9
-
-
Schmidtke, C.1
Abendroth, U.2
Brock, J.3
Serrania, J.4
Becker, A.5
Bonas, U.6
-
36
-
-
84881343363
-
A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens
-
PMID:23950988
-
Lee K, Huang X, Yang C, Lee D, Ho V, Nobuta K, Fan JB, Wang K. A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens. PLoS One 2013; 8:e70720; PMID:23950988; http://dx.doi.org/10.1371/journal.pone.0070720
-
(2013)
PLoS One
, vol.8
-
-
Lee, K.1
Huang, X.2
Yang, C.3
Lee, D.4
Ho, V.5
Nobuta, K.6
Fan, J.B.7
Wang, K.8
-
37
-
-
84855836835
-
Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
-
PMID:22336765
-
Wilms I, Overlöper A, Nowrousian M, Sharma CM, Narberhaus F. Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens. RNA Biol 2012; 9:446-57; PMID:22336765; http://dx.doi.org/10.4161/rna.17212
-
(2012)
RNA Biol
, vol.9
, pp. 446-457
-
-
Wilms, I.1
Overlöper, A.2
Nowrousian, M.3
Sharma, C.M.4
Narberhaus, F.5
-
38
-
-
77949570007
-
New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation
-
PMID:20150897
-
Pitzschke A, Hirt H. New insights into an old story: Agrobacterium- induced tumour formation in plants by plant transformation. EMBO J 2010; 29:1021-32; PMID:20150897; http://dx.doi.org/10.1038/emboj.2010.8
-
(2010)
EMBO J
, vol.29
, pp. 1021-1032
-
-
Pitzschke, A.1
Hirt, H.2
-
39
-
-
84886893883
-
The roles of bacterial and host plant factors in Agrobacterium-mediated genetic transformation
-
PMID:24166430
-
Lacroix B, Citovsky V. The roles of bacterial and host plant factors in Agrobacterium-mediated genetic transformation. Int J Dev Biol 2013; 57:467-81; PMID:24166430; http://dx.doi.org/10.1387/ijdb.130199bl
-
(2013)
Int J Dev Biol
, vol.57
, pp. 467-481
-
-
Lacroix, B.1
Citovsky, V.2
-
40
-
-
0033907671
-
The transfer of DNA from agrobacterium tumefaciens into plants: A feast of fundamental insights
-
PMID:10929098
-
Zupan J, Muth TR, Draper O, Zambryski P. The transfer of DNA from agrobacterium tumefaciens into plants: a feast of fundamental insights. Plant J 2000; 23:11-28; PMID:10929098; http://dx.doi.org/10.1046/j.1365-313x.2000.00808. x
-
(2000)
Plant J
, vol.23
, pp. 11-28
-
-
Zupan, J.1
Muth, T.R.2
Draper, O.3
Zambryski, P.4
-
41
-
-
33751179227
-
Agrobacterium tumefaciens and plant cell interactions and activities required for interkingdom macromolecular transfer
-
PMID:16709150
-
McCullen CA, Binns AN. Agrobacterium tumefaciens and plant cell interactions and activities required for interkingdom macromolecular transfer. Annu Rev Cell Dev Biol 2006; 22:101-27; PMID:16709150; http://dx.doi.org/10. 1146/annurev.cellbio.22.011105.102022
-
(2006)
Annu Rev Cell Dev Biol
, vol.22
, pp. 101-127
-
-
McCullen, C.A.1
Binns, A.N.2
-
42
-
-
0030058277
-
Mutational analysis of the input domain of the VirA protein of Agrobacterium tumefaciens
-
PMID:8576069
-
Doty SL, Yu MC, Lundin JI, Heath JD, Nester EW. Mutational analysis of the input domain of the VirA protein of Agrobacterium tumefaciens. J Bacteriol 1996; 178:961-70; PMID:8576069
-
(1996)
J Bacteriol
, vol.178
, pp. 961-970
-
-
Doty, S.L.1
Yu, M.C.2
Lundin, J.I.3
Heath, J.D.4
Nester, E.W.5
-
43
-
-
84872195609
-
Agrobacterium tumefaciens recognizes its host environment using ChvE to bind diverse plant sugars as virulence signals
-
PMID:23267119
-
Hu X, Zhao J, DeGrado WF, Binns AN. Agrobacterium tumefaciens recognizes its host environment using ChvE to bind diverse plant sugars as virulence signals. Proc Natl Acad Sci U S A 2013; 110:678-83; PMID:23267119; http://dx.doi.org/10.1073/pnas.1215033110
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 678-683
-
-
Hu, X.1
Zhao, J.2
DeGrado, W.F.3
Binns, A.N.4
-
44
-
-
33845510957
-
Biological systems of the host cell involved in Agrobacterium infection
-
PMID:17222189
-
Citovsky V, Kozlovsky SV, Lacroix B, Zaltsman A, Dafny-Yelin M, Vyas S, Tovkach A, Tzfira T. Biological systems of the host cell involved in Agrobacterium infection. Cell Microbiol 2007; 9:9-20; PMID:17222189; http://dx.doi.org/10.1111/j.1462-5822.2006.00830.x
-
(2007)
Cell Microbiol
, vol.9
, pp. 9-20
-
-
Citovsky, V.1
Kozlovsky, S.V.2
Lacroix, B.3
Zaltsman, A.4
Dafny-Yelin, M.5
Vyas, S.6
Tovkach, A.7
Tzfira, T.8
-
45
-
-
69949097598
-
Molecular basis of ChvE function in sugar binding, sugar utilization, and virulence in Agrobacterium tumefaciens
-
PMID:19633083
-
He F, Nair GR, Soto CS, Chang Y, Hsu L, Ronzone E, DeGrado WF, Binns AN. Molecular basis of ChvE function in sugar binding, sugar utilization, and virulence in Agrobacterium tumefaciens. J Bacteriol 2009; 191:5802-13; PMID:19633083; http://dx.doi.org/10.1128/JB.00451-09
-
(2009)
J Bacteriol
, vol.191
, pp. 5802-5813
-
-
He, F.1
Nair, G.R.2
Soto, C.S.3
Chang, Y.4
Hsu, L.5
Ronzone, E.6
DeGrado, W.F.7
Binns, A.N.8
-
46
-
-
0029813129
-
Requirement for genes with homology to ABC transport systems for attachment and virulence of Agrobacterium tumefaciens
-
PMID:8752352
-
Matthysse AG, Yarnall HA, Young N. Requirement for genes with homology to ABC transport systems for attachment and virulence of Agrobacterium tumefaciens. J Bacteriol 1996; 178:5302-8; PMID:8752352
-
(1996)
J Bacteriol
, vol.178
, pp. 5302-5308
-
-
Matthysse, A.G.1
Yarnall, H.A.2
Young, N.3
-
47
-
-
84879124379
-
In planta fitnesscost of the Atu4232-regulon encoding for a selective GABA-binding sensor in Agrobacterium
-
PMID:23710277
-
Planamente S, Moréra S, Faure D. In planta fitnesscost of the Atu4232-regulon encoding for a selective GABA-binding sensor in Agrobacterium. Commun Integr Biol 2013; 6:e23692; PMID:23710277; http://dx.doi.org/10.4161/cib. 23692
-
(2013)
Commun Integr Biol
, vol.6
-
-
Planamente, S.1
Moréra, S.2
Faure, D.3
-
48
-
-
0030685696
-
Characterization of the acc operon from the nopaline-type Ti plasmid pTiC58, which encodes utilization of agrocinopines A and B and susceptibility to agrocin 84
-
PMID:9393724
-
Kim H, Farrand SK. Characterization of the acc operon from the nopaline-type Ti plasmid pTiC58, which encodes utilization of agrocinopines A and B and susceptibility to agrocin 84. J Bacteriol 1997; 179:7559-72; PMID:9393724
-
(1997)
J Bacteriol
, vol.179
, pp. 7559-7572
-
-
Kim, H.1
Farrand, S.K.2
-
49
-
-
0027163480
-
Genetic analysis of the agrocinopine catabolic region of Agrobacterium tumefaciens Ti plasmid pTiC58, which encodes genes required for opine and agrocin 84 transport
-
PMID:8366042
-
Hayman GT, Beck von Bodman S, Kim H, Jiang P, Farrand SK. Genetic analysis of the agrocinopine catabolic region of Agrobacterium tumefaciens Ti plasmid pTiC58, which encodes genes required for opine and agrocin 84 transport. J Bacteriol 1993; 175:5575-84; PMID:8366042
-
(1993)
J Bacteriol
, vol.175
, pp. 5575-5584
-
-
Hayman, G.T.1
Beck Von Bodman, S.2
Kim, H.3
Jiang, P.4
Farrand, S.K.5
-
50
-
-
84857374524
-
Receptortransporter interactions of canonical ATP-binding cassette import systems in prokaryotes
-
PMID:21561685
-
Schneider E, Eckey V, Weidlich D, Wiesemann N, Vahedi-Faridi A, Thaben P, Saenger W. Receptortransporter interactions of canonical ATP-binding cassette import systems in prokaryotes. Eur J Cell Biol 2012; 91:311-7; PMID:21561685; http://dx.doi.org/10.1016/j.ejcb.2011.02.008
-
(2012)
Eur J Cell Biol
, vol.91
, pp. 311-317
-
-
Schneider, E.1
Eckey, V.2
Weidlich, D.3
Wiesemann, N.4
Vahedi-Faridi, A.5
Thaben, P.6
Saenger, W.7
-
51
-
-
33646577136
-
GABA controls the level of quorum-sensing signal in Agrobacterium tumefaciens
-
PMID:16645034
-
Chevrot R, Rosen R, Haudecoeur E, Cirou A, Shelp BJ, Ron E, Faure D. GABA controls the level of quorum-sensing signal in Agrobacterium tumefaciens. Proc Natl Acad Sci U S A 2006; 103:7460-4; PMID:16645034; http://dx.doi.org/10.1073/ pnas.0600313103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 7460-7464
-
-
Chevrot, R.1
Rosen, R.2
Haudecoeur, E.3
Cirou, A.4
Shelp, B.J.5
Ron, E.6
Faure, D.7
-
52
-
-
36148952518
-
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
-
PMID:17971083
-
del Val C, Rivas E, Torres-Quesada O, Toro N, Jiménez-Zurdo JI. Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. Mol Microbiol 2007; 66:1080-91; PMID:17971083; http://dx.doi.org/10.1111/j.1365-2958.2007.05978.x
-
(2007)
Mol Microbiol
, vol.66
, pp. 1080-1091
-
-
Del Val, C.1
Rivas, E.2
Torres-Quesada, O.3
Toro, N.4
Jiménez-Zurdo, J.I.5
-
53
-
-
39149122829
-
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021
-
PMID:18093320
-
Ulvé VM, Sevin EW, Chéron A, Barloy-Hubler F. Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021. BMC Genomics 2007; 8:467; PMID:18093320; http://dx.doi.org/10.1186/1471-2164-8-467
-
(2007)
BMC Genomics
, vol.8
, pp. 467
-
-
Ulvé, V.M.1
Sevin, E.W.2
Chéron, A.3
Barloy-Hubler, F.4
-
54
-
-
54949119162
-
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011
-
PMID:18793445
-
Valverde C, Livny J, Schlüter JP, Reinkensmeier J, Becker A, Parisi G. Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011. BMC Genomics 2008; 9:416; PMID:18793445; http://dx.doi.org/10. 1186/1471-2164-9-416
-
(2008)
BMC Genomics
, vol.9
, pp. 416
-
-
Valverde, C.1
Livny, J.2
Schlüter, J.P.3
Reinkensmeier, J.4
Becker, A.5
Parisi, G.6
-
55
-
-
70350129683
-
Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti
-
PMID:19800865
-
Voss B, Hölscher M, Baumgarth B, Kalbfleisch A, Kaya C, Hess WR, Becker A, Evguenieva-Hackenberg E. Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochem Biophys Res Commun 2009; 390:331-6; PMID:19800865; http://dx.doi.org/10.1016/j.bbrc.2009.09.125
-
(2009)
Biochem Biophys Res Commun
, vol.390
, pp. 331-336
-
-
Voss, B.1
Hölscher, M.2
Baumgarth, B.3
Kalbfleisch, A.4
Kaya, C.5
Hess, W.R.6
Becker, A.7
Evguenieva-Hackenberg, E.8
-
56
-
-
76949103628
-
Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array
-
PMID:20089193
-
Vercruysse M, Fauvart M, Cloots L, Engelen K, Thijs IM, Marchal K, Michiels J. Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array. BMC Genomics 2010; 11:53; PMID:20089193; http://dx.doi.org/10. 1186/1471-2164-11-53
-
(2010)
BMC Genomics
, vol.11
, pp. 53
-
-
Vercruysse, M.1
Fauvart, M.2
Cloots, L.3
Engelen, K.4
Thijs, I.M.5
Marchal, K.6
Michiels, J.7
-
57
-
-
84880253321
-
Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti
-
PMID:23869210
-
Torres-Quesada O, Millán V, Nisa-Martínez R, Bardou F, Crespi M, Toro N, Jiménez-Zurdo JI. Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti. PLoS One 2013; 8:e68147; PMID:23869210; http://dx.doi.org/10.1371/journal.pone.0068147
-
(2013)
PLoS One
, vol.8
-
-
Torres-Quesada, O.1
Millán, V.2
Nisa-Martínez, R.3
Bardou, F.4
Crespi, M.5
Toro, N.6
Jiménez-Zurdo, J.I.7
-
58
-
-
84905448071
-
Genome-wide profiling of Hfqbinding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti
-
PMID:24786641
-
Torres-Quesada O, Reinkensmeier J, Schlüter JP, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jiménez-Zurdo JI. Genome-wide profiling of Hfqbinding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biol 2014; 11; PMID:24786641; http://dx.doi.org/10.4161/rna.28239
-
(2014)
RNA Biol
, vol.11
-
-
Torres-Quesada, O.1
Reinkensmeier, J.2
Schlüter, J.P.3
Robledo, M.4
Peregrina, A.5
Giegerich, R.6
Toro, N.7
Becker, A.8
Jiménez-Zurdo, J.I.9
-
59
-
-
84863567985
-
Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308
-
PMID:22690807
-
Caswell CC, Gaines JM, Ciborowski P, Smith D, Borchers CH, Roux CM, Sayood K, Dunman PM, Roop Ii RM. Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Mol Microbiol 2012; 85:345-60; PMID:22690807; http://dx.doi.org/10.1111/j.1365-2958.2012.08117.x
-
(2012)
Mol Microbiol
, vol.85
, pp. 345-360
-
-
Caswell, C.C.1
Gaines, J.M.2
Ciborowski, P.3
Smith, D.4
Borchers, C.H.5
Roux, C.M.6
Sayood, K.7
Dunman, P.M.8
Roop Ii, R.M.9
-
60
-
-
77950280325
-
The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa
-
PMID:20205931
-
Torres-Quesada O, Oruezabal RI, Peregrina A, Jofré E, Lloret J, Rivilla R, Toro N, Jiménez-Zurdo JI. The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa. BMC Microbiol 2010; 10:71; PMID:20205931; http://dx.doi.org/10. 1186/1471-2180-10-71
-
(2010)
BMC Microbiol
, vol.10
, pp. 71
-
-
Torres-Quesada, O.1
Oruezabal, R.I.2
Peregrina, A.3
Jofré, E.4
Lloret, J.5
Rivilla, R.6
Toro, N.7
Jiménez-Zurdo, J.I.8
-
61
-
-
84868322857
-
Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens
-
PMID:22821981
-
Wilms I, Möller P, Stock AM, Gurski R, Lai EM, Narberhaus F. Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens. J Bacteriol 2012; 194:5209-17; PMID:22821981; http://dx.doi.org/10.1128/JB.00510-12
-
(2012)
J Bacteriol
, vol.194
, pp. 5209-5217
-
-
Wilms, I.1
Möller, P.2
Stock, A.M.3
Gurski, R.4
Lai, E.M.5
Narberhaus, F.6
-
62
-
-
79960433506
-
Hfq and its constellation of RNA
-
PMID:21760622
-
Vogel J, Luisi BF. Hfq and its constellation of RNA. Nat Rev Microbiol 2011; 9:578-89; PMID:21760622; http://dx.doi.org/10.1038/nrmicro2615
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
63
-
-
0002782867
-
Hfq: A bacterial Sm-like protein that mediates RNA-RNA interaction
-
PMID:11804583
-
Møller T, Franch T, Højrup P, Keene DR, Bächinger HP, Brennan RG, Valentin-Hansen P. Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell 2002; 9:23-30; PMID:11804583; http://dx.doi.org/ 10.1016/S1097-2765(01)00436-1
-
(2002)
Mol Cell
, vol.9
, pp. 23-30
-
-
Møller, T.1
Franch, T.2
Højrup, P.3
Keene, D.R.4
Bächinger, H.P.5
Brennan, R.G.6
Valentin-Hansen, P.7
-
64
-
-
0019294131
-
Agrobacterium tumefaciens mutants affected in crown gall tumorigenesis and octopine catabolism
-
PMID:6253441
-
Garfinkel DJ, Nester EW. Agrobacterium tumefaciens mutants affected in crown gall tumorigenesis and octopine catabolism. J Bacteriol 1980; 144:732-43; PMID:6253441
-
(1980)
J Bacteriol
, vol.144
, pp. 732-743
-
-
Garfinkel, D.J.1
Nester, E.W.2
-
65
-
-
58249121729
-
RNAalifold: Improved consensus structure prediction for RNA alignments
-
PMID:19014431
-
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 2008; 9:474; PMID:19014431; http://dx.doi.org/10.1186/1471-2105-9-474
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
-
66
-
-
77954296666
-
A new bioinformatics analysis tools framework at EMBL-EBI
-
PMID:20439314
-
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R. A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res 2010; 38:W695-9; PMID:20439314; http://dx.doi.org/10.1093/nar/gkq313
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Goujon, M.1
McWilliam, H.2
Li, W.3
Valentin, F.4
Squizzato, S.5
Paern, J.6
Lopez, R.7
-
67
-
-
34250709662
-
Target identification of small noncoding RNAs in bacteria
-
PMID:17574901
-
Vogel J, Wagner EG. Target identification of small noncoding RNAs in bacteria. Curr Opin Microbiol 2007; 10:262-70; PMID:17574901; http://dx.doi.org/10.1016/j.mib.2007.06.001
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 262-270
-
-
Vogel, J.1
Wagner, E.G.2
-
68
-
-
0032514643
-
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci
-
PMID:9770507
-
Lease RA, Cusick ME, Belfort M. Riboregulation in Escherichia coli : DsrA RNA acts by RNA:RNA interactions at multiple loci. Proc Natl Acad Sci U S A 1998; 95:12456-61; PMID:9770507; http://dx.doi.org/10.1073/pnas.95.21.12456
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 12456-12461
-
-
Lease, R.A.1
Cusick, M.E.2
Belfort, M.3
-
69
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
PMID:11917098
-
Massé E, Gottesman S. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A 2002; 99:4620-5; PMID:11917098; http://dx.doi.org/10.1073/pnas.032066599
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 4620-4625
-
-
Massé, E.1
Gottesman, S.2
-
70
-
-
57149118846
-
The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
-
PMID:18953042
-
Guillier M, Gottesman S. The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res 2008; 36:6781-94; PMID:18953042; http://dx.doi.org/10.1093/ nar/gkn742
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6781-6794
-
-
Guillier, M.1
Gottesman, S.2
-
71
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
PMID:19620966
-
Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 2009; 16:840-6; PMID:19620966; http://dx.doi.org/10.1038/nsmb.1631
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
72
-
-
77349104885
-
Reprogramming of anaerobic metabolism by the FnrS small RNA
-
PMID:20070527
-
Durand S, Storz G. Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol 2010; 75:1215-31; PMID:20070527; http://dx.doi.org/10. 1111/j.1365-2958.2010.07044.x
-
(2010)
Mol Microbiol
, vol.75
, pp. 1215-1231
-
-
Durand, S.1
Storz, G.2
-
73
-
-
79251559383
-
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
-
PMID:21292161
-
Beisel CL, Storz G. The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Mol Cell 2011; 41:286-97; PMID:21292161; http://dx.doi.org/10.1016/j. molcel.2010.12.027
-
(2011)
Mol Cell
, vol.41
, pp. 286-297
-
-
Beisel, C.L.1
Storz, G.2
-
74
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
PMID:19732340
-
Papenfort K, Said N, Welsink T, Lucchini S, Hinton JC, Vogel J. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 2009; 74:139-58; PMID:19732340; http://dx.doi.org/10. 1111/j.1365-2958.2009.06857.x
-
(2009)
Mol Microbiol
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
75
-
-
79956005312
-
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes
-
PMID:21245045
-
Rice JB, Vanderpool CK. The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res 2011; 39:3806-19; PMID:21245045; http://dx.doi.org/10.1093/nar/gkq1219
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3806-3819
-
-
Rice, J.B.1
Vanderpool, C.K.2
-
76
-
-
84858860817
-
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
-
PMID:22180532
-
Fröhlich KS, Papenfort K, Berger AA, Vogel J. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res 2012; 40:3623-40; PMID:22180532; http://dx.doi.org/10.1093/nar/gkr1156
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3623-3640
-
-
Fröhlich, K.S.1
Papenfort, K.2
Berger, A.A.3
Vogel, J.4
-
77
-
-
84863924309
-
Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
-
PMID:20980440
-
Gottesman S, Storz G. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 2011; 3:3; PMID:20980440; http://dx.doi.org/10.1101/cshperspect.a003798
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
, pp. 3
-
-
Gottesman, S.1
Storz, G.2
-
78
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
PMID:19366629
-
Papenfort K, Vogel J. Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol 2009; 160:278-87; PMID:19366629; http://dx.doi.org/10.1016/j.resmic.2009.03.004
-
(2009)
Res Microbiol
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
79
-
-
26444505976
-
Effect of RyhB small RNA on global iron use in Escherichia coli
-
PMID:16199566
-
Massé E, Vanderpool CK, Gottesman S. Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol 2005; 187:6962-71; PMID:16199566; http://dx.doi.org/10.1128/JB.187.20.6962-6971.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 6962-6971
-
-
Massé, E.1
Vanderpool, C.K.2
Gottesman, S.3
-
80
-
-
34249777280
-
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
-
PMID:17542919
-
Prévost K, Salvail H, Desnoyers G, Jacques JF, Phaneuf E, Massé E. The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol 2007; 64:1260-73; PMID:17542919; http://dx.doi.org/10.1111/j.1365- 2958.2007.05733.x
-
(2007)
Mol Microbiol
, vol.64
, pp. 1260-1273
-
-
Prévost, K.1
Salvail, H.2
Desnoyers, G.3
Jacques, J.F.4
Phaneuf, E.5
Massé, E.6
-
81
-
-
67349095027
-
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
-
PMID:19407815
-
Desnoyers G, Morissette A, Prévost K, Massé E. Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J 2009; 28:1551-61; PMID:19407815; http://dx.doi.org/10.1038/emboj.2009.116
-
(2009)
EMBO J
, vol.28
, pp. 1551-1561
-
-
Desnoyers, G.1
Morissette, A.2
Prévost, K.3
Massé, E.4
-
82
-
-
77957015946
-
A small RNA promotes siderophore production through transcriptional and metabolic remodeling
-
PMID:20696910
-
Salvail H, Lanthier-Bourbonnais P, Sobota JM, Caza M, Benjamin JA, Mendieta ME, Lépine F, Dozois CM, Imlay J, Massé E. A small RNA promotes siderophore production through transcriptional and metabolic remodeling. Proc Natl Acad Sci U S A 2010; 107:15223-8; PMID:20696910; http://dx.doi.org/10.1073/pnas.1007805107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15223-15228
-
-
Salvail, H.1
Lanthier-Bourbonnais, P.2
Sobota, J.M.3
Caza, M.4
Benjamin, J.A.5
Mendieta, M.E.6
Lépine, F.7
Dozois, C.M.8
Imlay, J.9
Massé, E.10
-
83
-
-
33748257975
-
Modulating the outer membrane with small RNAs
-
PMID:16951250
-
Guillier M, Gottesman S, Storz G. Modulating the outer membrane with small RNAs. Genes Dev 2006; 20:2338-48; PMID:16951250; http://dx.doi.org/10. 1101/gad.1457506
-
(2006)
Genes Dev
, vol.20
, pp. 2338-2348
-
-
Guillier, M.1
Gottesman, S.2
Storz, G.3
-
84
-
-
77950914774
-
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
-
PMID:20398411
-
Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A. A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 2010; 11:245; PMID:20398411; http://dx.doi.org/10.1186/1471-2164-11-245
-
(2010)
BMC Genomics
, vol.11
, pp. 245
-
-
Schlüter, J.P.1
Reinkensmeier, J.2
Daschkey, S.3
Evguenieva-Hackenberg, E.4
Janssen, S.5
Jänicke, S.6
Becker, J.D.7
Giegerich, R.8
Becker, A.9
-
85
-
-
33845679465
-
Extracellular gammaaminobutyrate mediates communication between plants and other organisms
-
PMID:17151138
-
Shelp BJ, Bown AW, Faure D. Extracellular gammaaminobutyrate mediates communication between plants and other organisms. Plant Physiol 2006; 142:1350-2; PMID:17151138; http://dx.doi.org/10.1104/pp.106.088955
-
(2006)
Plant Physiol
, vol.142
, pp. 1350-1352
-
-
Shelp, B.J.1
Bown, A.W.2
Faure, D.3
-
86
-
-
57349159936
-
Cloning, purification, crystallization and preliminary X-ray analysis of a bacterial GABA receptor with a Venus flytrap fold
-
PMID:19052373
-
Moréra S, Gueguen-Chaignon V, Raffoux A, Faure D. Cloning, purification, crystallization and preliminary X-ray analysis of a bacterial GABA receptor with a Venus flytrap fold. Acta Crystallogr Sect F Struct Biol Cryst Commun 2008; 64:1153-5; PMID:19052373; http://dx.doi.org/10.1107/ S1744309108036555
-
(2008)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.64
, pp. 1153-1155
-
-
Moréra, S.1
Gueguen-Chaignon, V.2
Raffoux, A.3
Faure, D.4
-
87
-
-
54049122625
-
Comparative transcriptome analysis of Agrobacterium tumefaciens in response to plant signal salicylic acid, indole-3-acetic acid and gammaamino butyric acid reveals signalling cross-talk and Agrobacterium - plant co-evolution
-
PMID:18671824
-
Yuan ZC, Haudecoeur E, Faure D, Kerr KF, Nester EW. Comparative transcriptome analysis of Agrobacterium tumefaciens in response to plant signal salicylic acid, indole-3-acetic acid and gammaamino butyric acid reveals signalling cross-talk and Agrobacterium - plant co-evolution. Cell Microbiol 2008; 10:2339-54; PMID:18671824; http://dx.doi.org/10.1111/j.1462-5822.2008. 01215.x
-
(2008)
Cell Microbiol
, vol.10
, pp. 2339-2354
-
-
Yuan, Z.C.1
Haudecoeur, E.2
Faure, D.3
Kerr, K.F.4
Nester, E.W.5
-
88
-
-
77956909298
-
A conserved mechanism of GABA binding and antagonism is revealed by structurefunction analysis of the periplasmic binding protein Atu2422 in Agrobacterium tumefaciens
-
PMID:20630861
-
Planamente S, Vigouroux A, Mondy S, Nicaise M, Faure D, Moréra S. A conserved mechanism of GABA binding and antagonism is revealed by structurefunction analysis of the periplasmic binding protein Atu2422 in Agrobacterium tumefaciens. J Biol Chem 2010; 285:30294-303; PMID:20630861; http://dx.doi.org/10.1074/jbc.M110.140715
-
(2010)
J Biol Chem
, vol.285
, pp. 30294-30303
-
-
Planamente, S.1
Vigouroux, A.2
Mondy, S.3
Nicaise, M.4
Faure, D.5
Moréra, S.6
-
89
-
-
71549126189
-
Activation of gene expression by small RNA
-
PMID:19880344
-
Fröhlich KS, Vogel J. Activation of gene expression by small RNA. Curr Opin Microbiol 2009; 12:674-82; PMID:19880344; http://dx.doi.org/10.1016/j. mib.2009.09.009
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 674-682
-
-
Fröhlich, K.S.1
Vogel, J.2
-
90
-
-
0036437019
-
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
-
PMID:12410838
-
Majdalani N, Hernandez D, Gottesman S. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol Microbiol 2002; 46:813-26; PMID:12410838; http://dx.doi.org/10.1046/j.1365-2958.2002.03203.x
-
(2002)
Mol Microbiol
, vol.46
, pp. 813-826
-
-
Majdalani, N.1
Hernandez, D.2
Gottesman, S.3
-
91
-
-
0028957883
-
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli
-
PMID:7534408
-
Sledjeski D, Gottesman S. A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli. Proc Natl Acad Sci U S A 1995; 92:2003-7; PMID:7534408; http://dx.doi.org/10.1073/pnas.92.6.2003
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 2003-2007
-
-
Sledjeski, D.1
Gottesman, S.2
-
92
-
-
0029739317
-
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli
-
PMID:8670904
-
Sledjeski DD, Gupta A, Gottesman S. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli. EMBO J 1996; 15:3993-4000; PMID:8670904
-
(1996)
EMBO J
, vol.15
, pp. 3993-4000
-
-
Sledjeski, D.D.1
Gupta, A.2
Gottesman, S.3
-
93
-
-
84887826391
-
A small RNA activates CFA synthase by isoform-specific mRNA stabilization
-
PMID:24141880
-
Fröhlich KS, Papenfort K, Fekete A, Vogel J. A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J 2013; 32:2963-79; PMID:24141880; http://dx.doi.org/10.1038/emboj.2013.222
-
(2013)
EMBO J
, vol.32
, pp. 2963-2979
-
-
Fröhlich, K.S.1
Papenfort, K.2
Fekete, A.3
Vogel, J.4
-
94
-
-
77956879952
-
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
-
PMID:20683441
-
Mandin P, Gottesman S. Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J 2010; 29:3094-107; PMID:20683441; http://dx.doi.org/10.1038/emboj.2010.179
-
(2010)
EMBO J
, vol.29
, pp. 3094-3107
-
-
Mandin, P.1
Gottesman, S.2
-
95
-
-
84883683618
-
Subunit ä is the key player for assembly of the H(+)-translocating unit of Escherichia coli F(O)F1 ATP synthase
-
PMID:23864656
-
Hilbers F, Eggers R, Pradela K, Friedrich K, Herkenhoff-Hesselmann B, Becker E, Deckers-Hebestreit G. Subunit ä is the key player for assembly of the H(+)-translocating unit of Escherichia coli F(O)F1 ATP synthase. J Biol Chem 2013; 288:25880-94; PMID:23864656; http://dx.doi.org/10.1074/jbc.M113. 484675
-
(2013)
J Biol Chem
, vol.288
, pp. 25880-25894
-
-
Hilbers, F.1
Eggers, R.2
Pradela, K.3
Friedrich, K.4
Herkenhoff-Hesselmann, B.5
Becker, E.6
Deckers-Hebestreit, G.7
-
96
-
-
0021073779
-
Construction of improved M13 vectors using oligodeoxy-nucleotide-directed mutagenesis
-
PMID:6323249
-
Norrander J, Kempe T, Messing J. Construction of improved M13 vectors using oligodeoxy-nucleotide-directed mutagenesis. Gene 1983; 26:101-6; PMID:6323249; http://dx.doi.org/10.1016/0378-1119(83)90040-9
-
(1983)
Gene
, vol.26
, pp. 101-106
-
-
Norrander, J.1
Kempe, T.2
Messing, J.3
-
97
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
PMID:942051
-
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976; 72:248-54; PMID:942051; http://dx.doi.org/10.1016/0003- 2697(76)90527-3
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
98
-
-
0021355340
-
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
-
PMID:6731838
-
Wessel D, Flügge UI. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal Biochem 1984; 138:141-3; PMID:6731838; http://dx.doi.org/10.1016/0003-2697(84) 90782-6
-
(1984)
Anal Biochem
, vol.138
, pp. 141-143
-
-
Wessel, D.1
Flügge, U.I.2
-
99
-
-
49749123013
-
Improved image analysis workflow for 2-D gels enables largescale 2-D gel-based proteomics studies - COPD biomarker discovery study
-
PMID:18618493
-
Bandow JE, Baker JD, Berth M, Painter C, Sepulveda OJ, Clark KA, Kilty I, VanBogelen RA. Improved image analysis workflow for 2-D gels enables largescale 2-D gel-based proteomics studies - COPD biomarker discovery study. Proteomics 2008; 8:3030-41; PMID:18618493; http://dx.doi.org/10.1002/pmic.200701184
-
(2008)
Proteomics
, vol.8
, pp. 3030-3041
-
-
Bandow, J.E.1
Baker, J.D.2
Berth, M.3
Painter, C.4
Sepulveda, O.J.5
Clark, K.A.6
Kilty, I.7
VanBogelen, R.A.8
-
100
-
-
77952787655
-
Proteomic and transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant
-
PMID:20437057
-
Klüsener S, Hacker S, Tsai YL, Bandow JE, Gust R, Lai EM, Narberhaus F. Proteomic and transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant. Mol Genet Genomics 2010; 283:575-89; PMID:20437057; http://dx.doi.org/10.1007/s00438-010- 0542-7
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 575-589
-
-
Klüsener, S.1
Hacker, S.2
Tsai, Y.L.3
Bandow, J.E.4
Gust, R.5
Lai, E.M.6
Narberhaus, F.7
-
101
-
-
0019888537
-
Evidence for two functional gal promoters in intact Escherichia coli cells
-
PMID:6271763
-
Aiba H, Adhya S, de Crombrugghe B. Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem 1981; 256:11905-10; PMID:6271763
-
(1981)
J Biol Chem
, vol.256
, pp. 11905-11910
-
-
Aiba, H.1
Adhya, S.2
De Crombrugghe, B.3
-
102
-
-
0027932830
-
Antisense RNA-mediated transcriptional attenuation occurs faster than stable antisense/target RNA pairing: An in vitro study of plasmid pIP501
-
PMID:7520390
-
Brantl S, Wagner EG. Antisense RNA-mediated transcriptional attenuation occurs faster than stable antisense/target RNA pairing: an in vitro study of plasmid pIP501. EMBO J 1994; 13:3599-607; PMID:7520390
-
(1994)
EMBO J
, vol.13
, pp. 3599-3607
-
-
Brantl, S.1
Wagner, E.G.2
-
103
-
-
0024252185
-
Extension inhibition analysis of translation initiation complexes
-
PMID:2468068
-
Hartz D, McPheeters DS, Traut R, Gold L. Extension inhibition analysis of translation initiation complexes. Methods Enzymol 1988; 164:419-25; PMID:2468068; http://dx.doi.org/10.1016/S0076-6879(88)64058-4
-
(1988)
Methods Enzymol
, vol.164
, pp. 419-425
-
-
Hartz, D.1
McPheeters, D.S.2
Traut, R.3
Gold, L.4
-
104
-
-
84904810632
-
CopraRNA and IntaRNA: Predicting small RNA targets, networks and interaction domains
-
PMID:24838564
-
Wright PR, Georg J, Mann M, Sorescu DA, Richter AS, Lott S, et al. CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains. Nucleic Acids Res 2014; PMID:24838564; http://dx.doi:10.1093/nar/gku359
-
(2014)
Nucleic Acids Res
-
-
Wright, P.R.1
Georg, J.2
Mann, M.3
Sorescu, D.A.4
Richter, A.S.5
Lott, S.6
-
105
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
PMID:12824337
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-15; PMID:12824337; http://dx.doi.org/10.1093/nar/gkg595
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|