-
1
-
-
60149088848
-
Origins and Mechanisms of miRNAs and siRNAs
-
Carthew, R.W. and Sontheimer, E.J. (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell, 136, 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
2
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters, L.S. and Storz, G. (2009) Regulatory RNAs in bacteria. Cell, 136, 615-628.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
3
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
Storz, G., Vogel, J. and Wassarman, K.M. (2011) Regulation by small RNAs in bacteria: expanding frontiers. Mol. Cell, 43, 880-891.
-
(2011)
Mol. Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
4
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
DOI 10.1101/gad.447207
-
Sharma, C.M., Darfeuille, F., Plantinga, T.H. and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev., 21, 2804-2817. (Pubitemid 350070725)
-
(2007)
Genes and Development
, vol.21
, Issue.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
5
-
-
33847206046
-
Control of fur synthesis by the non-coding RNA RyhB and iron-responsive decoding
-
Vecerek, B., Moll, I. and Blasi, U. (2007) Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. Embo J., 26, 965-975.
-
(2007)
Embo J.
, vol.26
, pp. 965-975
-
-
Vecerek, B.1
Moll, I.2
Blasi, U.3
-
6
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C.D. and Vogel, J. (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat. Struct. Mol. Biol., 16, 840-846.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.D.4
Vogel, J.5
-
7
-
-
67349095027
-
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
-
Desnoyers, G., Morissette, A., Prevost, K., Masse, E., Preost, K. and Masse E. (2009) Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J., 28, 1551-1561.
-
(2009)
EMBO J.
, vol.28
, pp. 1551-1561
-
-
Desnoyers, G.1
Morissette, A.2
Prevost, K.3
Masse, E.4
Preost, K.5
Masse, E.6
-
8
-
-
34247567492
-
An Antisense RNA Inhibits Translation by Competing with Standby Ribosomes
-
DOI 10.1016/j.molcel.2007.04.003, PII S1097276507002195
-
Darfeuille, F., Unoson, C., Vogel, J. and Wagner, E.G.H. (2007) An antisense RNA inhibits translation by competing with standby ribosomes. Mol. Cell., 26, 381-392. (Pubitemid 46687099)
-
(2007)
Molecular Cell
, vol.26
, Issue.3
, pp. 381-392
-
-
Darfeuille, F.1
Unoson, C.2
Vogel, J.3
Wagner, E.G.H.4
-
9
-
-
57149111586
-
Small RNA binding to 50 mRNA coding region inhibits translational initiation
-
Bouvier, M., Sharma, C.M., Mika, F., Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 50 mRNA coding region inhibits translational initiation. Mol. Cell, 32, 827-837.
-
(2008)
Mol. Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
11
-
-
78649995398
-
Small RNAs promote mRNA stability to activate the synthesis of virulence factors
-
Podkaminski, D. and Vogel, J. (2010) Small RNAs promote mRNA stability to activate the synthesis of virulence factors. Mol. Microbiol., 78, 1327-1331.
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 1327-1331
-
-
Podkaminski, D.1
Vogel, J.2
-
12
-
-
71549126189
-
Activation of gene expression by small RNA
-
Frohlich, K.S. and Vogel, J. (2009) Activation of gene expression by small RNA. Curr. Opin. Microbiol., 12, 674-682.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 674-682
-
-
Frohlich, K.S.1
Vogel, J.2
-
13
-
-
1642565815
-
The bacterial Sm-like protein Hfq: A key player in RNA transactions
-
DOI 10.1111/j.1365-2958.2003.03935.x
-
Valentin-Hansen, P., Eriksen, M. and Udesen, C. (2004) The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol. Microbiol., 51, 1525-1533. (Pubitemid 38406529)
-
(2004)
Molecular Microbiology
, vol.51
, Issue.6
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
14
-
-
34247158257
-
Mechanism of RNA silencing by Hfq-binding small RNAs
-
DOI 10.1016/j.mib.2007.03.010, PII S1369527407000276, Cell Regulation (RNA Special Issue)
-
Aiba, H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr. Opin. Microbiol., 10, 134-139. (Pubitemid 46590050)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 134-139
-
-
Aiba, H.1
-
15
-
-
34247109118
-
Hfq structure, function and ligand binding
-
DOI 10.1016/j.mib.2007.03.015, PII S1369527407000331, Cell Regulation (RNA Special Issue)
-
Brennan, R.G. and Link, T.M. (2007) Hfq structure, function and ligand binding. Curr. Opin. Microbiol., 10, 125-133. (Pubitemid 46590055)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
16
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
Papenfort, K. and Vogel, J. (2009) Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res. Microbiol., 160, 278-287.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
17
-
-
77955155869
-
Base pairing small RNAs and their roles in global regulatory networks
-
Beisel, C.L. and Storz, G. (2010) Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol. Rev., 34, 866-882.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 866-882
-
-
Beisel, C.L.1
Storz, G.2
-
18
-
-
0019547284
-
Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA
-
Tomizawa, J., Itoh, T., Selzer, G. and Som, T. (1981) Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA. Proc. Natl. Acad. Sci. USA, 78, 1421-1425.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 1421-1425
-
-
Tomizawa, J.1
Itoh, T.2
Selzer, G.3
Som, T.4
-
19
-
-
0346070776
-
RNAs involved in copy-number control and incompatibility of plasmid R1
-
Stougaard, P., Molin, S. and Nordstrom, K. (1981) RNAs involved in copy-number control and incompatibility of plasmid R1. Proc. Natl. Acad. Sci. USA, 78, 6008-6012. (Pubitemid 12247454)
-
(1981)
Proceedings of the National Academy of Sciences of the United States of America
, vol.78
, Issue.10
, pp. 6008-6012
-
-
Stougaard, P.1
Molin, S.2
Nordstrom, K.3
-
20
-
-
34247148876
-
RNA antitoxins
-
DOI 10.1016/j.mib.2007.03.003, PII S1369527407000203, Cell Regulation (RNA Special Issue)
-
Gerdes, K. and Wagner, E.G.H. (2007) RNA antitoxins. Curr. Opin. Microbiol., 10, 117-124. (Pubitemid 46590043)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 117-124
-
-
Gerdes, K.1
Wagner, E.G.H.2
-
21
-
-
79958047291
-
Cis-antisense RNA, another level of gene regulation in bacteria
-
Georg, J. and Hess, W.R. (2011) Cis-antisense RNA, another level of gene regulation in bacteria. Microbiol. Mol. Biol. Rev., 75, 286-300.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
22
-
-
78149421813
-
Bacterial antisense RNAs: How many are there and what are they doing?
-
Thomason, M.K. and Storz, G. (2010) Bacterial antisense RNAs: How many are there and what are they doing? Annu. Rev. Genet., 44, 167.
-
(2010)
Annu. Rev. Genet.
, vol.44
, pp. 167
-
-
Thomason, M.K.1
Storz, G.2
-
23
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma, C.M., Hoffmann, S., Darfeuille, F., Reignier, J., Findeiss, S., Sittka, A., Chabas, S., Reiche, K., Hackermu?ller, J., Reinhardt, R. et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature, 464, 250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermuller, J.9
Reinhardt, R.10
-
24
-
-
70349462763
-
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
-
Georg, J., Voss, B., Scholz, I., Mitschke, J., Wilde, A. and Hess, W.R. (2009) Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol. Syst. Biol., 5, 305.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 305
-
-
Georg, J.1
Voss, B.2
Scholz, I.3
Mitschke, J.4
Wilde, A.5
Hess, W.R.6
-
25
-
-
84055200530
-
Genome-wide antisense transcription drives mRNA processing in bacteria
-
Lasa, I., Toledo-Arana, A., Dobin, A., Villanueva, M., de los Mozos, I.R., Vergara-Irigaray, M., Segura, V., Fagegaltier, D., Penade?s, J.R., Valle, J. et al. (2011) Genome-wide antisense transcription drives mRNA processing in bacteria. Proc. Natl Acad. Sci. USA, 108, 20172-20177.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 20172-20177
-
-
Lasa, I.1
Toledo-Arana, A.2
Dobin, A.3
Villanueva, M.4
De Los Mozos, I.R.5
Vergara-Irigaray, M.6
Segura, V.7
Fagegaltier, D.8
Penades, J.R.9
Valle, J.10
-
26
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
Toledo-Arana, A., Dussurget, O., Nikitas, G., Sesto, N., Guet-Revillet, H., Balestrino, D., Loh, E., Gripenland, J., Tiensuu, T., Vaitkevicius, K. et al. (2009) The Listeria transcriptional landscape from saprophytism to virulence. Nature, 459, 950-956.
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
Dussurget, O.2
Nikitas, G.3
Sesto, N.4
Guet-Revillet, H.5
Balestrino, D.6
Loh, E.7
Gripenland, J.8
Tiensuu, T.9
Vaitkevicius, K.10
-
27
-
-
79952174199
-
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp
-
Mitschke, J., Georg, J., Scholz, I., Sharma, C.M., Dienst, D., Bantscheff, J., Voss, B., Steglich, C., Wilde, A., Vogel, J. et al. (2011) An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc. Natl Acad. Sci. USA, 108, 2124-2129.
-
(2011)
PCC6803. Proc. Natl Acad. Sci. USA
, vol.108
, pp. 2124-2129
-
-
Mitschke, J.1
Georg, J.2
Scholz, I.3
Sharma, C.M.4
Dienst, D.5
Bantscheff, J.6
Voss, B.7
Steglich, C.8
Wilde, A.9
Vogel, J.10
-
28
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
DOI 10.1126/science.288.5465.517
-
Omer, A.D., Lowe, T.M., Russell, A.G., Ebhardt, H., Eddy, S.R. and Dennis, P.P. (2000) Homologs of small nucleolar RNAs in Archaea. Science, 288, 517-522. (Pubitemid 30236034)
-
(2000)
Science
, vol.288
, Issue.5465
, pp. 517-522
-
-
Omer, A.D.1
Lowe, T.M.2
Russell, A.C.3
Ebhardt, H.4
Eddy, S.R.5
Dennis, P.P.6
-
29
-
-
0034999985
-
A guided tour: Small RNA function in Aarchaea
-
DOI 10.1046/j.1365-2958.2001.02381.x
-
Dennis, P.P.P., Omer, A. and Lowe, T. (2001) A guided tour: small RNA function in Archaea. Mol. Microbiol., 40, 509-519. (Pubitemid 32453106)
-
(2001)
Molecular Microbiology
, vol.40
, Issue.3
, pp. 509-519
-
-
Dennis, P.P.1
Omer, A.2
Lowe, T.3
-
30
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
DOI 10.1093/nar/gkg175
-
Rozhdestvensky, T.S., Tang, T.H., Tchirkova, I.V., Brosius, J., Bachellerie, J.P. and Huttenhofer, A. (2003) Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res., 31, 869-877. (Pubitemid 36240424)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.3
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.-P.5
Huttenhofer, A.6
-
31
-
-
77950517765
-
The Nop5-L7A-fibrillarin RNP complex and a novel box C/D containing sRNA of Halobacterium salinarum NRC-1
-
Weisel, J., Wagner, S. and Klug, G. (2010) The Nop5-L7A-fibrillarin RNP complex and a novel box C/D containing sRNA of Halobacterium salinarum NRC-1. Biochem. Biophys. Res. Commun., 394, 542-547.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.394
, pp. 542-547
-
-
Weisel, J.1
Wagner, S.2
Klug, G.3
-
32
-
-
0037082426
-
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
Tang, T.H., Rozhdestvensky, T.S., d' Orval, B.C., Bortolin, M.L., Huber, H., Charpentier, B., Branlant, C., Bachellerie, J.P., Brosius, J. and Huttenhofer, A. (2002) RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res., 30, 921-930. (Pubitemid 34679660)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.4
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D'Orval, B.C.3
Bortolin, M.-L.4
Huber, H.5
Charpentier, B.6
Branlant, C.7
Bachellerie, J.-P.8
Brosius, J.9
Huttenhofer, A.10
-
33
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
DOI 10.1073/pnas.112047299
-
Tang, T.H., Bachellerie, J.P., Rozhdestvensky, T., Bortolin, M.L., Huber, H., Drungowski, M., Elge, T., Brosius, J. and Huttenhofer, A. (2002) Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc. Natl Acad. Sci. USA, 99, 7536-7541. (Pubitemid 34568726)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.11
, pp. 7536-7541
-
-
Tang, T.-H.1
Bachellerie, J.-P.2
Rozhdestvensky, T.3
Bortolin, M.-L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Huttenhofer, A.9
-
34
-
-
67650489281
-
Small RNAs in haloarchaea: Identification, differential expression and biological function
-
Straub, J., Brenneis, M., Jellen-Ritter, A., Heyer, R., Soppa, J. and Marchfelder, A. (2009) Small RNAs in haloarchaea: identification, differential expression and biological function. RNA Biol., 6, 281-292.
-
(2009)
RNA Biol.
, vol.6
, pp. 281-292
-
-
Straub, J.1
Brenneis, M.2
Jellen-Ritter, A.3
Heyer, R.4
Soppa, J.5
Marchfelder, A.6
-
35
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
Wurtzel, O., Sapra, R., Chen, F., Zhu, Y., Simmons, B.a. and Sorek, R. (2009) A single-base resolution map of an archaeal transcriptome. Genome Res., 20, 133-141.
-
(2009)
Genome Res.
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.4
Simmons, B.A.5
Sorek, R.6
-
36
-
-
76049099044
-
Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability
-
Jager, D., Sharma, C.M., Thomsen, J., Ehlers, C., Vogel, J. and Schmitz, R.A. (2009) Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability. Proc. Natl Acad. Sci. USA, 106, 21878-21882.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 21878-21882
-
-
Jager, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
37
-
-
23744474252
-
1 mutant in Methanosarcina mazei strain Gö1
-
DOI 10.1007/s00438-005-1128-7
-
Ehlers, C., Weidenbach, K., Veit, K., Deppenmeier, U., Metcalf, W.W. and Schmitz, R.A. (2005) Development of genetic methods and construction of a chromosomal glnK(1) mutant in Methanosarcina mazei strain Go1. Mol. Genet. Genomics, 273, 290-298. (Pubitemid 41123722)
-
(2005)
Molecular Genetics and Genomics
, vol.273
, Issue.4
, pp. 290-298
-
-
Ehlers, C.1
Weidenbach, K.2
Veit, K.3
Deppenmeier, U.4
Metcalf, W.W.5
Schmitz, R.A.6
-
38
-
-
0030900723
-
A genetic system for Archaea of the genus Methanosarcina: Liposome-mediated transformation and construction of shuttle vectors
-
Metcalf, W.W., Zhang, J.K., Apolinario, E., Sowers, K.R. and Wolfe, R.S. (1997) A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors. Proc. Natl Acad. Sci. USA, 94, 2626-2631.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 2626-2631
-
-
Metcalf, W.W.1
Zhang, J.K.2
Apolinario, E.3
Sowers, K.R.4
Wolfe, R.S.5
-
39
-
-
37749047864
-
Deletion of the archaeal histone in Methanosarcina mazei Go1 results in reduced growth and genomic transcription
-
Weidenbach, K., Gloer, J., Ehlers, C., Sandman, K., Reeve, J.N. and Schmitz, R.A. (2008) Deletion of the archaeal histone in Methanosarcina mazei Go1 results in reduced growth and genomic transcription. Mol. Microbiol., 67, 662-671.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 662-671
-
-
Weidenbach, K.1
Gloer, J.2
Ehlers, C.3
Sandman, K.4
Reeve, J.N.5
Schmitz, R.A.6
-
40
-
-
0025305971
-
Construction of an integration vector for use in the archaebacterium Methanococcus voltae and expression of a eubacterial resistance gene
-
Gernhardt, P., Possot, O., Foglino, M., Sibold, L. and Klein, A. (1990) Construction of an integration vector for use in the archaebacterium Methanococcus voltae and expression of a eubacterial resistance gene. Mol. Gen. Genet., 221, 273-279. (Pubitemid 20141642)
-
(1990)
Molecular and General Genetics
, vol.221
, Issue.2
, pp. 273-279
-
-
Gernhardt, P.1
Possot, O.2
Foglino, M.3
Sibold, L.4
Klein, A.5
-
41
-
-
33745394713
-
Global transcriptional analysis of Methanosarcina mazei strain Go×1 under different nitrogen availabilities
-
DOI 10.1007/s00438-006-0117-9
-
Veit, K., Ehlers, C., Ehrenreich, A., Salmon, K., Hovey, R., Gunsalus, R.P., Deppenmeier, U. and Schmitz, R.A. (2006) Global transcriptional analysis of Methanosarcina mazei strain Go1 under different nitrogen availabilities. Mol. Genet. Genomics, 276, 41-55. (Pubitemid 43946093)
-
(2006)
Molecular Genetics and Genomics
, vol.276
, Issue.1
, pp. 41-55
-
-
Veit, K.1
Ehlers, C.2
Ehrenreich, A.3
Salmon, K.4
Hovey, R.5
Gunsalus, R.P.6
Deppenmeier, U.7
Schmitz, R.A.8
-
42
-
-
49749117821
-
Insights into the NrpR regulon in Methanosarcina mazei Go1
-
Weidenbach, K., Ehlers, C., Kock, J., Ehrenreich, A. and Schmitz, R.A. (2008) Insights into the NrpR regulon in Methanosarcina mazei Go1. Arch. Microbiol., 190, 319-332.
-
(2008)
Arch. Microbiol.
, vol.190
, pp. 319-332
-
-
Weidenbach, K.1
Ehlers, C.2
Kock, J.3
Ehrenreich, A.4
Schmitz, R.A.5
-
43
-
-
77953120292
-
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
-
Holmqvist, E., Reimegard, J., Sterk, M., Grantcharova, N., Romling, U., Wagner, E.G.H., Reimega? rd, J. and Ro?mling, U. (2010) Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J., 29, 1840-1850.
-
(2010)
EMBO J.
, vol.29
, pp. 1840-1850
-
-
Holmqvist, E.1
Reimegard, J.2
Sterk, M.3
Grantcharova, N.4
Romling, U.5
Wagner, E.G.H.6
Reimegard, J.7
Romling, U.8
-
44
-
-
0032566634
-
Ribozyme processed tRNA transcripts with unfriendly internal promoter for T7 RNA polymerase: Production and activity
-
DOI 10.1016/S0014-5793(98)01096-5, PII S0014579398010965
-
Fechter, P., Rudinger, J., Giege R. and Thebald-Dietrich, a. (1998) Ribozyme processed tRNA transcripts with unfriendly internal promoter for T7 RNA polymerase: production and activity. FEBS Lett., 436, 99-103. (Pubitemid 28454614)
-
(1998)
FEBS Letters
, vol.436
, Issue.1
, pp. 99-103
-
-
Fechter, P.1
Rudinger, J.2
Giege, R.3
Theobald-Dietrich, A.4
-
45
-
-
20044381310
-
DNA microarray analysis of Methanosarcina mazei Go×1 reveals adaptation to different methanogenic substrates
-
DOI 10.1007/s00438-005-1126-9
-
Hovey, R., Lentes, S., Ehrenreich, A., Salmon, K., Saba, K., Gottschalk, G., Gunsalus, R.P. and Deppenmeier, U. (2005) DNA microarray analysis of Methanosarcina mazei Go1 reveals adaptation to different methanogenic substrates. Mol. Genet. Genomics, 273, 225-239. (Pubitemid 40768510)
-
(2005)
Molecular Genetics and Genomics
, vol.273
, Issue.3
, pp. 225-239
-
-
Hovey, R.1
Lentes, S.2
Ehrenreich, A.3
Salmon, K.4
Saba, K.5
Gottschalk, G.6
Gunsalus, R.P.7
Deppenmeier, U.8
-
46
-
-
24344474413
-
Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go×1
-
DOI 10.1128/JB.187.17.6147-6154.2005
-
Veit, K., Ehlers, C. and Schmitz, R.A. (2005) Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go?1. J. Bacteriol., 187, 6147-6154. (Pubitemid 41262811)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.17
, pp. 6147-6154
-
-
Veit, K.1
Ehlers, C.2
Schmitz, R.A.3
-
47
-
-
1842585499
-
The temporal expression profile of Mycobacterium tuberculosis infection in mice
-
DOI 10.1073/pnas.0306023101
-
Talaat, A.M., Lyons, R., Howard, S.T. and Johnston, S.A. (2004) The temporal expression profile of Mycobacterium tuberculosis infection in mice. Proc. Natl. Acad. Sci. USA, 101, 4602-4607. (Pubitemid 38437457)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.13
, pp. 4602-4607
-
-
Talaat, A.M.1
Lyons, R.2
Howard, S.T.3
Johnston, S.A.4
-
48
-
-
33646916591
-
Predicting Shine-Dalgarno sequence locations exposes genome annotation errors
-
Starmer, J., Stomp, A., Vouk, M. and Bitzer, D. (2006) Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput. Biol., 2, e57.
-
(2006)
PLoS Comput. Biol.
, vol.2
-
-
Starmer, J.1
Stomp, A.2
Vouk, M.3
Bitzer, D.4
-
49
-
-
57249083988
-
IntaRNA: Efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
-
Busch, A., Richter, A.S. and Backofen, R. (2008) IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics, 24, 2849-2856.
-
(2008)
Bioinformatics
, vol.24
, pp. 2849-2856
-
-
Busch, A.1
Richter, A.S.2
Backofen, R.3
-
50
-
-
75249107453
-
Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1
-
Richter, A.S., Schleberger, C., Backofen, R. and Steglich, C. (2010) Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. Bioinformatics, 26, 1-5.
-
(2010)
Bioinformatics
, vol.26
, pp. 1-5
-
-
Richter, A.S.1
Schleberger, C.2
Backofen, R.3
Steglich, C.4
-
51
-
-
0028094403
-
Footprinting mRNA-ribosome complexes with chemical probes
-
Huttenhofer, A. and Noller, H.F. (1994) Footprinting mRNA-ribosome complexes with chemical probes. EMBO J., 13, 3892-3901.
-
(1994)
EMBO J.
, vol.13
, pp. 3892-3901
-
-
Huttenhofer, A.1
Noller, H.F.2
-
52
-
-
68549122907
-
Lightweight comparison of RNAs based on exact sequence-structure matches
-
Heyne, S., Will, S., Beckstette, M. and Backofen, R. (2009) Lightweight comparison of RNAs based on exact sequence-structure matches. Bioinformatics, 25, 2095-2102.
-
(2009)
Bioinformatics
, vol.25
, pp. 2095-2102
-
-
Heyne, S.1
Will, S.2
Beckstette, M.3
Backofen, R.4
-
53
-
-
58249121729
-
RNAalifold: Improved consensus structure prediction for RNA alignments
-
Bernhart, S.H., Hofacker, I.L., Will, S., Gruber, A.R. and Stadler, P.F. (2008) RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics, 9, 474.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
-
54
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea
-
Deppenmeier, U., Johann, A., Hartsch, T., Merkl, R., Schmitz, R.A., Martinez-Arias, R., Henne, A., Wiezer, A., Baumer, S., Jacobi, C. et al. (2002) The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J. Mol. Microbiol. Biotechnol., 4, 453-461. (Pubitemid 34784706)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
Henne, A.7
Wiezer, A.8
Baumer, S.9
Jacobi, C.10
Bruggemann, H.11
Lienard, T.12
Christmann, A.13
Bomeke, M.14
Steckel, S.15
Bhattacharyya, A.16
Lykidis, A.17
Overbeek, R.18
Klenk, H.-P.19
Gunsalus, R.P.20
Fritz, H.-J.21
Gottschalk, G.22
more..
-
55
-
-
67749124076
-
Transcriptional profiling of methyltransferase genes during growth of Methanosarcina mazei on trimethylamine
-
Kratzer, C., Carini, P., Hovey, R., Deppenmeier, U. and Kratzer, C. (2009) Transcriptional profiling of methyltransferase genes during growth of Methanosarcina mazei on trimethylamine. J. Bacteriol., 191, 5108-5115.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 5108-5115
-
-
Kratzer, C.1
Carini, P.2
Hovey, R.3
Deppenmeier, U.4
Kratzer, C.5
-
56
-
-
84887212496
-
Regulation of translation in haloarchaea: 50-and 30-UTRs are essential and have to functionally interact in vivo
-
Brenneis, M. and Soppa, J. (2009) Regulation of translation in haloarchaea: 50-and 30-UTRs are essential and have to functionally interact in vivo. PLoS One, 4, e4484.
-
(2009)
PLoS One
, vol.4
-
-
Brenneis, M.1
Soppa, J.2
-
57
-
-
79958251726
-
Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi
-
Phok, K., Moisan, A., Rinaldi, D., Brucato, N., Carpousis, A.J., Gaspin, C. and Clouet-d'Orval, B. (2011) Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi. BMC Genomics, 12, 312.
-
(2011)
BMC Genomics
, vol.12
, pp. 312
-
-
Phok, K.1
Moisan, A.2
Rinaldi, D.3
Brucato, N.4
Carpousis, A.J.5
Gaspin, C.6
Clouet-D'Orval, B.7
-
58
-
-
0037188546
-
Noncoding RNA genes identified in AT-rich hyperthermophiles
-
DOI 10.1073/pnas.112063799
-
Klein, R.J., Misulovin, Z. and Eddy, S.R. (2002) Noncoding RNA genes identified in AT-rich hyperthermophiles. Proc. Natl Acad. Sci. USA, 99, 7542-7547. (Pubitemid 34568727)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.11
, pp. 7542-7547
-
-
Klein, R.J.1
Misulovin, Z.2
Eddy, S.R.3
-
59
-
-
4644319574
-
Circular box C/D RNAs in Pyrococcus furiosus
-
DOI 10.1073/pnas.0403520101
-
Starostina, N.G., Marshburn, S., Johnson, L.S., Eddy, S.R., Terns, R.M. and Terns, M.P. (2004) Circular box C/D RNAs in Pyrococcus furiosus. Proc. Natl Acad. Sci. USA, 101, 14097-14101. (Pubitemid 39305036)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.39
, pp. 14097-14101
-
-
Starostina, N.G.1
Marshburn, S.2
Johnson, L.S.3
Eddy, S.R.4
Terns, R.M.5
Terns, M.P.6
-
60
-
-
0037022130
-
Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus
-
DOI 10.1016/S0960-9822(02)00655-3, PII S0960982202006553
-
Speckmann, W.A., Li, Z., Lowe, T.M., Eddy, S.R., Terns, R.M. and Terns, M.P. (2002) Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus. Curr. Biol., 12, 199-203. (Pubitemid 34122374)
-
(2002)
Current Biology
, vol.12
, Issue.3
, pp. 199-203
-
-
Speckmann, W.A.1
Li, Z.-H.2
Lowe, T.M.3
Eddy, S.R.4
Terns, R.M.5
Terns, M.P.6
-
61
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
-
Gaspin, C., Cavaille, J., Erauso, G., Bachellerie, J.P. and Cavaille, J. (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J. Mol. Biol., 297, 895-906.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 895-906
-
-
Gaspin, C.1
Cavaille, J.2
Erauso, G.3
Bachellerie, J.P.4
Cavaille, J.5
-
62
-
-
84860171056
-
Transcriptome-wide discovery of circular RNAs in Archaea
-
Danan, M., Schwartz, S., Edelheit, S. and Sorek, R. (2011) Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res., 40, 3131-3142.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 3131-3142
-
-
Danan, M.1
Schwartz, S.2
Edelheit, S.3
Sorek, R.4
-
63
-
-
59749087476
-
Small RNAs of the halophilic archaeon Haloferax volcanii
-
Soppa, J., Straub, J., Brenneis, M., Jellen-Ritter, A., Heyer, R., Fischer, S., Granzow, M., Voss, B., Hess, W.R., Tjaden, B. et al. (2009) Small RNAs of the halophilic archaeon Haloferax volcanii. Biochem. Soc. Trans., 37, 133-136.
-
(2009)
Biochem. Soc. Trans.
, vol.37
, pp. 133-136
-
-
Soppa, J.1
Straub, J.2
Brenneis, M.3
Jellen-Ritter, A.4
Heyer, R.5
Fischer, S.6
Granzow, M.7
Voss, B.8
Hess, W.R.9
Tjaden, B.10
-
64
-
-
0028983409
-
Transcription in archaea: Similarity to that in eucarya
-
Langer, D., Hain, J., Thuriaux, P. and Zillig, W. (1995) Transcription in archaea: similarity to that in eucarya. Proc. Natl Acad. Sci. USA, 92, 5768-5772.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 5768-5772
-
-
Langer, D.1
Hain, J.2
Thuriaux, P.3
Zillig, W.4
-
65
-
-
20344386725
-
Archaeal transcription and its regulators
-
DOI 10.1111/j.1365-2958.2005.04627.x
-
Geiduschek, E.P. and Ouhammouch, M. (2005) Archaeal transcription and its regulators. Mol. Microbiol., 56, 1397-1407. (Pubitemid 40780638)
-
(2005)
Molecular Microbiology
, vol.56
, Issue.6
, pp. 1397-1407
-
-
Geiduschek, E.P.1
Ouhammouch, M.2
-
66
-
-
17744378948
-
An Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus is negatively autoregulated
-
DOI 10.1074/jbc.M005916200
-
Brinkman, A.B., Dahlke, I., Tuininga, J.E., Lammers, T., Dumay, V., de Heus, E., Lebbink, J.H., Thomm, M., de Vos, W.M. and van Der Oost, J. (2000) An Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus is negatively autoregulated. J. Biol. Chem., 275, 38160-38169. (Pubitemid 32009133)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.49
, pp. 38160-38169
-
-
Brinkman, A.B.1
Dahlke, I.2
Tuininga, J.E.3
Lammers, T.4
Dumay, V.5
De Heus, E.6
Lebbink, J.H.G.7
Thomm, M.8
De Vos, W.M.9
Van Der Oost, J.10
-
67
-
-
20344396840
-
Archaeal transcriptional regulation - Variation on a bacterial theme?
-
DOI 10.1016/j.tim.2005.03.015, PII S0966842X05000880
-
Bell, S.D. (2005) Archaeal transcriptional regulation-variation on a bacterial theme? Trends Microbiol., 13, 262-265. (Pubitemid 40779813)
-
(2005)
Trends in Microbiology
, vol.13
, Issue.6
, pp. 262-265
-
-
Bell, S.D.1
-
68
-
-
84890624644
-
Archaea
-
Blackwell Publishing, Oxford, UK
-
Garrett, R.A. and Klenk, H.-P. (2007) Archaea. Evolution, Physiology, and Molecular Biology. Blackwell Publishing, Oxford, UK.
-
(2007)
Evolution, Physiology, and Molecular Biology
-
-
Garrett, R.A.1
Klenk, H.-P.2
-
69
-
-
40349096762
-
The role of the small regulatory RNA GcvB in GcvB/mRNA posttranscriptional regulation of oppA and dppA in Escherichia coli
-
DOI 10.1111/j.1574-6968.2008.01068.x
-
Pulvermacher, S.C., Stauffer, L.T. and Stauffer, G.V. (2008) The role of the small regulatory RNA GcvB in GcvB/mRNA posttranscriptional regulation of oppA and dppA in Escherichia coli. FEMS Microbiol. Lett., 281, 42-50. (Pubitemid 351342045)
-
(2008)
FEMS Microbiology Letters
, vol.281
, Issue.1
, pp. 42-50
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
70
-
-
33751383274
-
E-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
DOI 10.1111/j.1365-2958.2006.05524.x
-
Papenfort, K., Pfeiffer, V., Mika, F., Lucchini, S., Hinton, J.C. and Vogel, J. (2006) SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol. Microbiol., 62, 1674-1688. (Pubitemid 44813812)
-
(2006)
Molecular Microbiology
, vol.62
, Issue.6
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.D.5
Vogel, J.6
-
71
-
-
15044340366
-
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
-
DOI 10.1093/nar/gki313
-
Afonyushkin, T., Vecerek, B., Moll, I., Blasi, U., Kaberdin, V.R. and Blasi, U. (2005) Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res., 33, 1678-1689. (Pubitemid 41418396)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.5
, pp. 1678-1689
-
-
Afonyushkin, T.1
Vecerek, B.2
Moll, I.3
Blasi, U.4
Kaberdin, V.R.5
-
72
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
DOI 10.1101/gad.1330405
-
Morita, T., Maki, K. and Aiba, H. (2005) RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev., 19, 2176-2186. (Pubitemid 41330319)
-
(2005)
Genes and Development
, vol.19
, Issue.18
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
73
-
-
78651067735
-
Hfq binding at RhlB-recognition region of RNase e is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
-
Ikeda, Y., Yagi, M., Morita, T. and Aiba, H. (2011) Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol. Microbiol., 79, 419-432.
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 419-432
-
-
Ikeda, Y.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
74
-
-
79151470965
-
RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA
-
Opdyke, J.A., Fozo, E.M., Hemm, M.R. and Storz, G. (2011) RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA. J. Mol. Biol., 406, 29-43.
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 29-43
-
-
Opdyke, J.A.1
Fozo, E.M.2
Hemm, M.R.3
Storz, G.4
-
75
-
-
0037115876
-
The phylogenetic distribution of bacterial ribonucleases
-
DOI 10.1093/nar/gkf691
-
Condon, C. and Putzer, H. (2002) The phylogenetic distribution of bacterial ribonucleases. Nucleic Acids Res., 30, 5339-5346. (Pubitemid 36113910)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.24
, pp. 5339-5346
-
-
Condon, C.1
Putzer, H.2
-
76
-
-
37749010878
-
Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Bose, A. and Metcalf, W.W. (2008) Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Mol. Microbiol., 67, 649-661.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 649-661
-
-
Bose, A.1
Metcalf, W.W.2
-
77
-
-
44349098671
-
Genetic analysis of the methanol- and methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A
-
DOI 10.1128/JB.00117-08
-
Bose, A., Pritchett, M.A. and Metcalf, W.W. (2008) Genetic analysis of the methanol-and methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A. J. Bacteriol., 190, 4017-4026. (Pubitemid 351732881)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.11
, pp. 4017-4026
-
-
Bose, A.1
Pritchett, M.A.2
Metcalf, W.W.3
-
78
-
-
70350468862
-
Physiology and posttranscriptional regulation of methanol:coenzyme M methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Opulencia, R.B., Bose, A. and Metcalf, W.W. (2009) Physiology and posttranscriptional regulation of methanol:coenzyme M methyltransferase isozymes in Methanosarcina acetivorans C2A. J. Bacteriol., 191, 6928-6935.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 6928-6935
-
-
Opulencia, R.B.1
Bose, A.2
Metcalf, W.W.3
-
79
-
-
33749585561
-
Differential regulation of the three methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
DOI 10.1128/JB.00535-06
-
Bose, A., Pritchett, M.A., Rother, M. and Metcalf, W.W. (2006) Differential regulation of the three methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. J. Bacteriol., 188, 7274-7283. (Pubitemid 44547632)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.20
, pp. 7274-7283
-
-
Bose, A.1
Pritchett, M.A.2
Rother, M.3
Metcalf, W.W.4
-
80
-
-
79955725097
-
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
-
Sonnleitner, E., Gonzalez, N., Sorger-Domenigg, T., Heeb, S., Richter, A.S., Backofen, R., Williams, P., Hu?ttenhofer, A., Haas, D. and Blasi, U. (2011) The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal. Mol. Microbiol., 80, 868-885.
-
(2011)
Mol. Microbiol.
, vol.80
, pp. 868-885
-
-
Sonnleitner, E.1
Gonzalez, N.2
Sorger-Domenigg, T.3
Heeb, S.4
Richter, A.S.5
Backofen, R.6
Williams, P.7
Huttenhofer, A.8
Haas, D.9
Blasi, U.10
-
81
-
-
84855464046
-
A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide
-
Sayed, N., Jousselin, A. and Felden, B. (2011) A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nat. Struct. Mol. Biol., 19, 105-112.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 105-112
-
-
Sayed, N.1
Jousselin, A.2
Felden, B.3
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