Bacterioplankton communities in a high-altitude freshwater wetland

Annals of Microbiology

Volumn 64, Issue 3, 2014, Pages 1405-1411

  Zhang, Jingxu ^a   Zhang, Xiaoling ^a   Liu, Yong ^a   Xie, Shuguang ^a   Liu, Yungen ^b  

^a PEKING UNIVERSITY   (China)

^b National Plateau Wetland Research Center   (China)

Author keywords

Freshwater; Luteolibacter; Microbial community; Proteobacteria; Verrucomicrobia; Wetlands

Indexed keywords

EID: 84906303857     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-013-0785-8     Document Type: Article

References (38)

1. Akiyama M, Shimizu S, Ishijima Y, Naganuma T (2010) Response of microbial community structure to natural and accelerated hydrarch successions in the boreal wetlands in northern Hokkaido, Japan. Limnology 11(3):273-279
2. Arnds J, Knittel K, Buck U, Winkel M, Amann R (2010) Development of a16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake. Syst Appl Microbiol 33:139-148
3. Cheng W, Zhang JX, Wang Z, Wang M, Xie SG (2013) Bacterial communities in sediments of a drinking water reservoir. Ann Microbiol. doi: 10.1007/s13213-013-0712-z
4. da Rocha UN, van Elsas JD, van Overbeek LS (2011) Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere. FEMS Microbiol Ecol 78(2):297-305
5. de Figueiredo DR, Pereira MJ, Moura A, Silva L, Barrios S, Fonseca F, Henriques I, Correia A (2007) Bacterial community composition over a dry winter in meso- and eutrophic Portuguese water bodies. FEMS Microbiol Ecol 59(3):638-650
6. Dorador C, Vila I, Witzel KP, Imhoff JF (2013) Bacterial and archaeal diversity in high altitude wetlands of the Chilean Altiplano. Fundam Appl Limnol 182(2):135-159
7. Feng S, Chen C, Wang QF, Zhang XJ, Yang ZY, Xie SG (2013) Characterization of microbial communities in a granular activated carbon-sand dual media filter for drinking water treatment. Int J Environ Sci Technol 10(5):917-922
8. Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DBM, Sogin ML, Martiny AC (2012) Global distribution and diversity of marine Verrucomicrobia. ISME J 6(8):1499-1505
9. Humbert JF, Dorigo U, Cecchi P, Le Berre B, Debroas D, Bouvy M (2009) Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems. Environ Microbiol 11(9):2339-2350
10. Jiang F, Li WJ, Xiao MC, Dai J, Kan WJ, Chen L, Li WX, Fang CX, Peng F (2012) Luteolibacter luojiensis sp nov., isolated from Arctic tundra soil, and emended description of the genus Luteolibacter. Int J Syst Evol Microbiol 62:2259-2263
11. Johnson RJ, Smith BE, Rowland SJ, Whitby C (2013) Biodegradation of alkyl branched aromatic alkanoic naphthenic acids by Pseudomonas putida KT2440. Int Biodeterior Biodegrad 81: SI 3-8
12. Kadnikov VV, Mardanov AV, Beletsky AV, Shubenkova OV, Pogodaeva TV, Zemskaya TI, Ravin NV, Skryabin KG (2012) Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal. FEMS Microbiol Ecol 79(2):348-358
13. Kolmonen E, Rantala-Ylinen A, Rajaniemi-Wacklin P, Lepitö LA, Haukka K, Sivonen K (2011) Bacterioplankton community composition in 67 Finnish lakes differs according to trophic status. Aquat Microb Ecol 62:241-250
14. Kwon S, Moon E, Kim TS, Hong S, Park HD (2011) Pyrosequencing demonstrated complex microbial communities in a membrane filtration system for a drinking water treatment plant. Microbes Environ 26(2):149-155
15. Liao XB, Chen C, Wang Z, Wan R, Chang CH, Zhang XJ, Xie SG (2013a) Changes of biomass and bacterial communities in biological activated carbon filters for drinking water treatment. Process Biochem 48(2):312-316
16. Liao XB, Chen C, Wang Z, Wan R, Chang CH, Zhang XJ, Xie SG (2013b) Pyrosequencing analysis of bacterial communities in drinking water biofilters receiving influents of different types. Process Biochem 48(4):703-707
17. Lindström ES, Vrede K, Leskinen E (2004) Response of a member of the Verrucomicrobia, among the dominating bacteria in a hypolimnion, to increased phosphorus availability. J Plankton Res 26:241-246
18. Liu YQ, Yao TD, Jiao NZ, Liu XB, Kang SC, Luo TW (2013a) Seasonal dynamics of the bacterial community in Lake Namco, the largest Tibetan lake. Geomicrobiol J 30(1):17-28
19. Liu GF, Zhou JT, Meng XM, Fu SQ, Wang J, Jin RF, Lv H (2013b) Decolorization of azo dyes by marine Shewanella strains under saline conditions. Appl Microbiol Biotechnol 97(9):4187-4197
20. Lu PP, Chen C, Wang QF, Wang Z, Zhang XJ, Xie SG (2013) Phylogenetic diversity of microbial communities in real drinking water distribution systems. Biotechnol Bioprocess Eng 18(1):119-124
21. Menon R, Jackson CR, Holland MM (2013) The influence of vegetation on microbial enzyme activity and bacterial community structure in freshwater constructed wetland sediments. Wetlands 33(2):365-378
22. Morrissey EM, Jenkins AS, Brown BL, Franklin RB (2013) Resource availability effects on nitrate-reducing microbial communities in a freshwater wetland. Wetlands 33(2):301-310
23. Ogugbue CJ, Sawidis T, Oranusi NA (2012) Bioremoval of chemically different synthetic dyes by Aeromonas hydrophila in simulated wastewater containing dyeing auxiliaries. Ann Microbiol 62(3):1141-1153
24. Ohshiro T, Harada N, Kobayashi Y, Miki Y, Kawamoto H (2012) Microbial fucoidan degradation by Luteolibacter algae H18 with deacetylation. Biosci Biotechnol Biochem 76(3):620-623
25. Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J (2013) Luteolibacter yonseiensis sp nov., isolated from activated sludge using algal metabolites. Int J Syst Evol Microbiol 63:1891-1895
26. Parveen B, Mary I, Vellet A, Ravet V, Debroas D (2013) Temporal dynamics and phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake. FEMS Microbiol Ecol 83(1):189-201
27. Peralta RM, Ahn C, Gillevet PM (2013) Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands. Sci Total Environ 443:725-732
28. Qin P, Mitsch WJ (2009) Wetland restoration and ecological engineering: International conference of wetland restoration and ecological engineering. Ecol Eng 35(4):437-441
29. Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71(3):1501-1506
30. Sommaruga R, Casamayor EO (2009) Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes. Freshw Biol 54(5):994-1005
31. Tang YS, Wang L, Jia JW, Fu XH, Le YQ, Chen XZ, Sun Y (2011) Response of soil microbial community in Jiuduansha wetland to different successional stages and its implications for soil microbial respiration and carbon turnover. Soil Biol Biochem 43(3):638-646
32. Tang J, Ding X, Wang LM, Xu QR, Yang ZR, Zhao J, Sun Q, Feng S, Zhang J (2012) Effects of wetland degradation on bacterial community in the Zoige Wetland of Qinghai-Tibetan Plateau (China). World J Microbiol Biotechnol 28(2):649-657
33. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73(16):5261-5267
34. Wang Y, Wan R, Zhang SY, Xie SG (2012) Anthracene biodegradation under nitrate-reducing conditions and associated microbial community changes. Biotechnol Bioprocess Eng 17(2):371-376
35. Wu QL, Zwart G, Schauer M, Kamst-van Agterveld MP, Hahn MW (2006) Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China. Appl Environ Microbiol 72(8):5478-5485
36. Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A (2008) Description of Persicirhabdus sediminis gen. nov., sp nov., Roseibacillus ishigakijimensis gen. nov., sp nov., Roseibacillus ponti sp nov., Roseibacillus persicicus sp nov., Luteolibacter pohnpeiensis gen. nov., sp nov and Luteolibacter algae sp nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 58:998-1007
37. Zhang SY, Wan R, Wang QF, Xie SG (2011) Identification of anthracene degraders in leachate-contaminated aquifer using stable isotope probing. Int Biodeterior Biodegrad 65(8):1224-1228
38. Zhang SY, Wang QF, Xie SG (2012) Bacterial and archaeal community structures in phenanthrene amended aquifer sediment microcosms under oxic and anoxic conditions. Int J Environ Res 6(4):1077-1088