Response of soil microbial community in Jiuduansha wetland to different successional stages and its implications for soil microbial respiration and carbon turnover

Soil Biology and Biochemistry

Volumn 43, Issue 3, 2011, Pages 638-646

  Tang, Yu shu ^a   Wang, Lei ^a   Jia, Jian wei ^a   Fu, Xiao hua ^a   Le, Yi quan ^a   Chen, Xiu zhi ^b   Sun, Ying ^b  

^a TONGJI UNIVERSITY   (China)

^b Shanghai Jiuduansha Wetland Nature Reserve Administration   (China)

Author keywords

Bacterial community structure; Coastal wetlands; Global change; Soil carbon sink; Vegetation type

Indexed keywords

BACTERIAL COMMUNITY STRUCTURE; COASTAL WETLANDS; GLOBAL CHANGE; SOIL CARBON SINK; VEGETATION TYPE;

BACTERIOLOGY; DECAY (ORGANIC); FORESTRY; ORGANIC CARBON; REGRESSION ANALYSIS; SOCIAL SCIENCES; VEGETATION; WETLANDS;

SOILS;

BACTERIUM; BIOACCUMULATION; CARBON; CELLULOSE; COASTAL ZONE; COMMUNITY RESPONSE; ENVIRONMENTAL FACTOR; GRASS; INORGANIC NITROGEN; METABOLISM; MICROBIAL ACTIVITY; PHYLOGENETICS; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SOIL RESPIRATION; SPECIES DIVERSITY; SUCCESSION; VEGETATION TYPE; WETLAND;

BACTERIOLOGY; CARBON; DECAY; FORESTRY; PLANTS; REGRESSION ANALYSIS; SOIL; WETLANDS;

CHINA; JIUDUANSHA; SHANGHAI;

ACIDOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; CYTOPHAGA; DELTAPROTEOBACTERIA; PHRAGMITES AUSTRALIS; SPARTINA ALTERNIFLORA;

EID: 78751578890     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2010.11.035     Document Type: Article

References (51)

1. Agnelli A., Ascher J., Corti G., Ceccherini M.T., Nannipieri P., Pietramellara G. Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA. Soil Biology and Biochemistry 2004, 36:859-868.
2. Baronti S., Tognetti R., Lanini G.M., Tonon G., Raschi A. Soil respiration and microbial activity in a Mediterranean grassland exposed to free air CO2 enrichment (FACE). Community Ecology 2008, 9(Suppl.):65-73.
3. Brix H., Sorrell B.K., Lorenzen B. Are Phragmites-dominated wetlands a net source or net sink of greenhouse gases?. Aquatic Botany 2001, 69:313-324.
4. Carter M.R., Gregorich E.G. Soil Sampling and Methods of Analysis 2008, Taylor & Francis Group, LLC, Florida. second ed.
5. Christensen T.R., Panikov N., Mastepanov M., Joabsson A., Stewart A. Biotic controls on CO2 and CH4 exchange in wetlands - a closed environment study. Biogeochemistry 2003, 64:337-354.
6. Confalonieri R., Perego A., Chiodini M.E., Scaglia B., Rosenmund A.S., Acutis M. Analysis of sample size for variables related to plant, soil, and soil microbial respiration in a paddy rice field. Field Crops Research 2009, 113:125-130.
7. Dasberg S., Nadler A. Soil salinity measurements. Soil Use and Management 1988, 4:127-133.
8. Davidson E.A., Verchot L.V., Cattânio J.H., Ackerman I.L., Carvalho J.E.M. Effects of soil water content on soil respiration in forests and cattle pastures of eastern Amazonia. Biogeochemistry 2000, 48:53-69.
9. Dorrepaal E., Cornelissen J.H.C., Aerts R., Wallén B., Vanlogtestijn R.S.P. Are growth forms consistent predictors of leaf litter quality and decomposability across peatlands along a latitudinal gradient?. Journal of Ecology 2005, 93:817-828.
10. Du S., Gao X.Z. Technical Specification for Soil Analysis 2006, Chinese Agriculture Press, Beijing.
11. Fan Z.P., Wang H., Deng D.Z., Sun X.K., Gao J.G., Zeng D.H. Measurement methods of soil heterotrophic respiration and key factors affecting the temperature sensitivity of the soil heterotrophic respiration. Chinese Journal of Ecology 2008, 27:1221-1227.
12. Fang J.Y., Wang W. Soil respiration as a key belowground process: issues and per-species. Journal of Plant Ecology (Chinese Version) 2007, 31:345-347.
13. Feris K.P., Ramsey P.W., Frazar C., Rillig M.C., Gannon J.E., Holben W.E. Structure and seasonal dynamics of hyporheic zone microbial communities in free-stone rivers of the western United States. Microbial Ecology 2003, 46:200-215.
14. Fu L.J., Yang W.J. Effects of pesticides of soil phosphatase activity and respiration of soil microorganisms loquat orchard. Chinese Journal of Eco-Agriculture 2007, 15:113-116.
15. Garbeva P., Van Veen J.A., Van Elsas J.D. Microbial diversity in soil: selection microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology 2004, 42:243-270.
16. Guan S.Y. Soil Enzymes and Their Research Methods 1986, Agriculture Press, Beijing.
17. He W.S., Feagin R., Lu J.J., Liu W.L., Yan Q., Xie Z.F. Impacts of introduced Spartina alterniflora along an elevation gradient at the Jiuduansha shoals in the Yangtze estuary, suburban Shanghai, China. Ecological Engineering 2007, 29:245-248.
18. Howard D.M., Howard P.J.A. Relationships between CO2 evolution, moisture content and temperature for a range of soil types. Soil Biology and Biochemistry 1993, 25:1537-1546.
19. Huang Q.H., Shen H.T., Wang Z.J., Liu X.C., Fu R.B. Influences of natural and anthropogenic processes on the nitrogen and phosphorus fluxes of the Yangtze Estuary, China. Regional Environmental Change 2006, 6:125-131.
20. Huang H.M., Zhang L.Q. A study of the population dynamics of Spartina alterniflora at Jiuduansha shoals, Shanghai, China. Ecological Engineering 2007, 29:164-172.
21. Jenkinson D.S., Adams D.E., Wild A. Model estimates of CO2 emissions from soil in response to global warming. Nature 1991, 351:304-306.
22. Kaiser O., Pühler A., Selbitschka W. Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation-independent approaches. Microbial Ecology 2001, 42:136-149.
23. Kirschbaum M.U.F. The temperature dependence of soil organic matter decomposition, and the effect of global warming on soil organic C storage. Soil Biology and Biochemistry 1995, 27:753-760.
24. Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 1993, 59:695-700.
25. Nakatsu T., Ichiyama S., Hiratake J., Saldanha A., Kobashi N., Sakata K., Kato H. Structural basis for the spectral difference in luciferase bioluminescence. Nature 2006, 440:372-376.
26. Olsen S.R., Cole C.V., Watanabe F.S., Dean L.A. Estimation of available phosphorus in soils by extraction with sodium bicarbonate. USDA Circular No.939 1954, 19. U.S. Government Printing Office, Washington, DC.
27. Orchard V.A., Cook F.J. Relationship between soil respiration and soil moisture. Soil Biology and Biochemistry 1983, 15:447-453.
28. Raich J.W., Schlesinger W.H. The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate. Tellus B 1992, 44:81-99.
29. Raich J.W., Tufekcioglu A. Vegetation and soil respiration: correlations and controls. Biogeochemistry 2000, 48:71-90.
30. Recous S., Robin D., Darwis D., Mary B. Soil inorganic N availability: effect on maize residue decomposition. Soil Biology and Biochemistry 1995, 27:1529-1538.
31. Rey A., Petsikos C., Jarvis P.G., Grace J. Effect of temperature and moisture on rates of carbon mineralization in a Mediterranean oak forest soil under controlled and field conditions. European Journal of Soil Science 2005, 56:589-599.
32. Rhoades C.C., Miller S.P., Shea M.M. Soil properties and soil nitrogen dynamics of prairie-like forest openings and surrounding forests in Kentucky's Knobs Region. American Midland Naturalist 2004, 152:1-11.
33. Rumberger A., Yao S.R., Merwin I.A., Nelson E.B., Thies J.E. Rootstock genotype and orchard replant position rather than soil fumigation or compost amendment determine tree growth and rhizosphere bacterial community composition in an apple replant soil. Plant and Soil 2004, 264:247-260.
34. Samuelson L., Mathew R., Stokes T., Feng Y.C., Aubrey D., Coleman M. Soil and microbial respiration in a loblolly pine plantation in response to seven years of irrigation and fertilization. Forest Ecology and Management 2009, 258:2431-2438.
35. Sarathchandra S.U., Ghani A., Yeates G.W., Burch G., Cox N.R. Effect of nitrogen and phosphate fertilisers on microbial and nematode diversity in pasture soils. Soil Biology and Biochemistry 2001, 33:953-964.
36. Sato K., Kato Y., Taguchi G., Nogawa M., Yokota A., Shimosaka M. Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria. Journal of General and Applied Microbiology 2009, 55:147-153.
37. Savage K.E., Davidson E.A. Interannual variation of soil respiration in two New England forests. Global Biogeochemistry Cycles 2001, 15:337-350.
38. Sekiguchi H., Koshikawa H., Hiroki M., Murakami S., Xu K., Watanabe M., Nakahara T., Zhu M., Uchiyama H. Bacterial distribution and phylogenetic diversity in the Changjiang estuary before the construction of the Three Gorges Dam. Microbial Ecology 2002, 43:82-91.
39. Shannon C.E., Weaver V. The Mathematical Theory of Communities 1963, University of Illinois Press, Urbana.
40. Smalla K., Wieland G., Buchner A., Zock A., Parzy J., Kaiser S., Roskot N., Heuer H., Berg G. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Applied and Environmental Microbiology 2001, 67:4742-4751.
41. Tabatabai M.A. Soil enzymes. SSSA Book Series 1994, vol. 5:775-833. Soil Science Society of America, Madison, WI. R.W. Weaver, J.S. Angle, P.S. Bottomley (Eds.).
42. Teng Y., Huang C.Y., Luo Y.M., Long J., Yao H.Y. Microbial activities and functional diversity of community in soils polluted with Pb-Zn-Ag mine tailings. Acta Pedologica Sinica 2004, 41:113-119.
43. Wang A.J., Chen J., Li D.Y., Zhuo Z.Q. Spatial variations of carbon and nitrogen in coastal wetland sediments of Quanzhou Bay in China. Environmental Science 2007, 28:2361-2368.
44. Yang G., He X.Y., Wang K.L., Huang J.S., Chen Z.H., Li Y.Z., Ai M.R. Effects of vegetation types on soil micro-biomass carbon, nitrogen and soil respiration. Chinese Journal of Soil Science 2008, 39:189-191.
45. Yang H.C., Im W.T., An D.S., Park W.S., Kim I.S., Lee S.T. Silvimonas terrae gen. nov., sp. nov., a novel chitin-degrading facultative anaerobe belonging to the 'Betaproteobacteria'. International Journal of Systematic and Evolutionary Microbiology 2005, 55:2329-2332.
46. Yang J., Huang J.H., Zhan X.M., Li X., Du L.H., Li L.H. The diurnal dynamic patterns of soil respiration for different plant communities in the agro-pastoral ecotone with reference to different measuring methods. Acta Phytoecologica Sinica 2004, 28:318-325.
47. Yao H.Y., Huang C.Y. Soil Microbial Ecology and Experimental Technology 2006, Science Press, Beijing.
48. Zahran H.H. Diversity, adaptation and activity of the bacterial flora in saline environments. Biology and Fertility of Soils 1997, 25:211-223.
49. Zhang C.B., Jin Z.X., Ke S.X. Study on the relationship among enzymes activities, microorganism, respiration rate and physico-chemical properties of soil under different forests of Tiantai mountain. Plant Nutrition and Fertilizer Science 2004, 10:51-56.
50. Zhang L., Xu Z.H. Assessing bacterial diversity in soil. Journal of Soils and Sediments 2008, 8:379-388.
51. Zhou J., Lei T. Review and prospects on methodology and affecting factors of soil microbial diversity. Biodiversity Science 2007, 15:306-311.