메뉴 건너뛰기




Volumn 33, Issue 3, 2010, Pages 139-148

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

Author keywords

16S rRNA; Fluorescence in situ hybridization; Gro e Fuchskuhle; Humic lake; Oligonucleotide probes; Verrucomicrobia

Indexed keywords

OLIGONUCLEOTIDE; RNA 16S;

EID: 77950919873     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2009.12.005     Document Type: Article
Times cited : (44)

References (94)
  • 2
    • 33646571506 scopus 로고    scopus 로고
    • Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany
    • Allgaier M., Grossart H.-P. Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany. Appl. Environ. Microbiol. 2006, 72:3489-3497.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3489-3497
    • Allgaier, M.1    Grossart, H.-P.2
  • 3
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann R., Fuchs B.M. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat. Rev. Microbiol. 2008, 6:339-348.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 4
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 1990, 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 5
    • 0042529205 scopus 로고    scopus 로고
    • Is the in situ accessibility for the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?
    • Behrens S., Fuchs B.M., Mueller F., Amann R. Is the in situ accessibility for the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?. Appl. Environ. Microbiol. 2003, 69:4935-4941.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4935-4941
    • Behrens, S.1    Fuchs, B.M.2    Mueller, F.3    Amann, R.4
  • 7
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius J., Dull T.J., Sleeter D.D., Noller H.F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 1981, 148:107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 8
    • 57449087986 scopus 로고    scopus 로고
    • Bacteria associated with benthic diatoms from Lake Constance: phylogeny and influences on diatom growth and secretion of extracellular polymeric substances
    • Bruckner C.G., Bahulikar R., Rahalkar M., Schink B., Kroth P.G. Bacteria associated with benthic diatoms from Lake Constance: phylogeny and influences on diatom growth and secretion of extracellular polymeric substances. Appl. Environ. Microbiol. 2008, 74:7740-7749.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 7740-7749
    • Bruckner, C.G.1    Bahulikar, R.2    Rahalkar, M.3    Schink, B.4    Kroth, P.G.5
  • 9
    • 44649132616 scopus 로고    scopus 로고
    • Extracellular peroxidase activity in an experimentally divided lake (Groβe Fuchskuhle, northern Germany)
    • Buck U., Babenzien H.-D., Zwirnmann E. Extracellular peroxidase activity in an experimentally divided lake (Groβe Fuchskuhle, northern Germany). Aquat. Microb. Ecol. 2008, 51:97-103.
    • (2008) Aquat. Microb. Ecol. , vol.51 , pp. 97-103
    • Buck, U.1    Babenzien, H.-D.2    Zwirnmann, E.3
  • 10
    • 0035019465 scopus 로고    scopus 로고
    • Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil
    • Buckley D.H., Schmidt T.M. Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil. FEMS Microbiol. Ecol. 2001, 35:105-112.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 105-112
    • Buckley, D.H.1    Schmidt, T.M.2
  • 11
    • 0242657623 scopus 로고    scopus 로고
    • Members of a readily enriched β-proteobacterial clade are common in surface waters of a humic lake
    • Burkert U., Warnecke F., Babenzien D., Zwirnmann E., Pernthaler J. Members of a readily enriched β-proteobacterial clade are common in surface waters of a humic lake. Appl. Environ. Microbiol. 2003, 69:6550-6559.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6550-6559
    • Burkert, U.1    Warnecke, F.2    Babenzien, D.3    Zwirnmann, E.4    Pernthaler, J.5
  • 12
    • 10344249983 scopus 로고    scopus 로고
    • The hydrogeology of a catchment area and an artificially divided dystrophic lake-consequences for the limnology of Lake Fuchskuhle
    • Burkert U., Ginzel G., Babenzien H.-D., Koschel R. The hydrogeology of a catchment area and an artificially divided dystrophic lake-consequences for the limnology of Lake Fuchskuhle. Biogeochemistry 2004, 71:225-246.
    • (2004) Biogeochemistry , vol.71 , pp. 225-246
    • Burkert, U.1    Ginzel, G.2    Babenzien, H.-D.3    Koschel, R.4
  • 13
    • 0037247770 scopus 로고    scopus 로고
    • Methane in an acidic bog lake: the influence of peat in the catchment on the biogeochemistry of methane
    • Casper P., Chim Chan O., Furtado A.L.S., Adams D.D. Methane in an acidic bog lake: the influence of peat in the catchment on the biogeochemistry of methane. Aquat. Sci. 2003, 65:36-46.
    • (2003) Aquat. Sci. , vol.65 , pp. 36-46
    • Casper, P.1    Chim Chan, O.2    Furtado, A.L.S.3    Adams, D.D.4
  • 14
    • 0035196366 scopus 로고    scopus 로고
    • Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil
    • Chin K.-J., Liesack W., Janssen P.H. Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil. Int. J. Syst. Evol. Microbiol. 2001, 51:1965-1968.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1965-1968
    • Chin, K.-J.1    Liesack, W.2    Janssen, P.H.3
  • 15
    • 0032752386 scopus 로고    scopus 로고
    • Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms
    • Chin K.J., Hahn D., Hengstmann U., Liesack W., Janssen P.H. Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms. Appl. Environ. Microbiol. 1999, 65:5042-5049.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5042-5049
    • Chin, K.J.1    Hahn, D.2    Hengstmann, U.3    Liesack, W.4    Janssen, P.H.5
  • 16
    • 33947302092 scopus 로고    scopus 로고
    • Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum 'Verrucomicrobia'
    • Choo Y.-J., Lee K., Song J., Cho J.-C. Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum 'Verrucomicrobia'. Int. J. Syst. Evol. Microbiol. 2007, 57:532-537.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 532-537
    • Choo, Y.-J.1    Lee, K.2    Song, J.3    Cho, J.-C.4
  • 17
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia V., Lafay B., Christen R. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol. Biol. Evol. 1996, 13:451-461.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 19
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
    • Daims H., Brühl A., Amann R., Schleifer K.H., Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 1999, 22:434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 20
    • 0014899907 scopus 로고
    • Isolation and description of a non-motile, fusiform, stalked bacterium, a representative of a new genus
    • DeBont J.A.M., Staley J.T., Pankratz H.S. Isolation and description of a non-motile, fusiform, stalked bacterium, a representative of a new genus. Antonie van Leeuwenhoek 1970, 36:397-407.
    • (1970) Antonie van Leeuwenhoek , vol.36 , pp. 397-407
    • DeBont, J.A.M.1    Staley, J.T.2    Pankratz, H.S.3
  • 21
    • 33644942303 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of Bacteria community composition in an acidic Sphagnum peat bog
    • Dedysh S.N., Pankratov T.A., Belova S.E., Kulichevskaya I.S., Liesack W. Phylogenetic analysis and in situ identification of Bacteria community composition in an acidic Sphagnum peat bog. Appl. Environ. Microbiol. 2006, 72:2110-2117.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 2110-2117
    • Dedysh, S.N.1    Pankratov, T.A.2    Belova, S.E.3    Kulichevskaya, I.S.4    Liesack, W.5
  • 22
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
    • Derrien M., Vaughan E.E., Plugge C.M., de Vos W.M. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int. J. Syst. Evol. Microbiol. 2004, 54:1469-1476.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1469-1476
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3    de Vos, W.M.4
  • 24
    • 2942620063 scopus 로고    scopus 로고
    • Discovery of the novel candidate phylum "Poribacteria" in marine sponges
    • Fieseler L., Horn M., Wagner M., Hentschel U. Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Appl. Environ. Microbiol. 2004, 70:3724-3732.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3724-3732
    • Fieseler, L.1    Horn, M.2    Wagner, M.3    Hentschel, U.4
  • 25
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs B.M., Wallner G., Beisker W., Schwippl I., Ludwig W., Amann R. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 1998, 64:4973-4982.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 26
    • 0033855457 scopus 로고    scopus 로고
    • Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
    • Fuchs B.M., Glöckner F.O., Wulf J., Amann R. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 2000, 66:3603-3607.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3603-3607
    • Fuchs, B.M.1    Glöckner, F.O.2    Wulf, J.3    Amann, R.4
  • 27
    • 27144551296 scopus 로고    scopus 로고
    • Intracellular compartmentation in planctomycetes
    • Fuerst J.A. Intracellular compartmentation in planctomycetes. Annu. Rev. Microbiol. 2005, 59:299-328.
    • (2005) Annu. Rev. Microbiol. , vol.59 , pp. 299-328
    • Fuerst, J.A.1
  • 28
    • 64849102262 scopus 로고    scopus 로고
    • Genomics update. New feel for new phyla
    • Galperin M.Y. Genomics update. New feel for new phyla. Environ. Microbiol. 2008, 10:1927-1933.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1927-1933
    • Galperin, M.Y.1
  • 29
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria
    • Glöckner F.O., Zaichikov E., Belkova N., Denissova L., Pernthaler J., Pernthaler A., Amann R. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl. Environ. Microbiol. 2000, 66:5053-5065.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5053-5065
    • Glöckner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 31
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon J.J., Zumstein E., Dabert P., Habouzit F., Moletta R. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 1997, 63:2802-2813.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 32
    • 22044440860 scopus 로고    scopus 로고
    • Impact of flooding on soil bacterial communities associated with poplar (Populus sp.) trees
    • Graff A., Conrad R. Impact of flooding on soil bacterial communities associated with poplar (Populus sp.) trees. FEMS Microbiol. Ecol. 2005, 53:401-415.
    • (2005) FEMS Microbiol. Ecol. , vol.53 , pp. 401-415
    • Graff, A.1    Conrad, R.2
  • 33
    • 38549126578 scopus 로고    scopus 로고
    • Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake
    • Grossart H.-P., Jezbera J., Hornák K., Hutalle K.M.L., Buck U., Simek K. Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environ. Microbiol. 2008, 10:635-652.
    • (2008) Environ. Microbiol. , vol.10 , pp. 635-652
    • Grossart, H.-P.1    Jezbera, J.2    Hornák, K.3    Hutalle, K.M.L.4    Buck, U.5    Simek, K.6
  • 35
    • 17844401490 scopus 로고    scopus 로고
    • Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms
    • Haukka K., Heikkinen E., Kairesalo T., Karjalainen H., Sivonen K. Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms. Environ. Microbiol. 2005, 7:620-630.
    • (2005) Environ. Microbiol. , vol.7 , pp. 620-630
    • Haukka, K.1    Heikkinen, E.2    Kairesalo, T.3    Karjalainen, H.4    Sivonen, K.5
  • 36
    • 0029799964 scopus 로고    scopus 로고
    • Phylogeny of Prosthecobacter, the fusiform Caulobacters: members of a recently discovered division of the Bacteria
    • Hedlund B.P., Gosink J.J., Staley J.T. Phylogeny of Prosthecobacter, the fusiform Caulobacters: members of a recently discovered division of the Bacteria. Int. J. Syst. Bacteriol. 1996, 46:960-966.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 960-966
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 37
    • 0035299549 scopus 로고    scopus 로고
    • Long-term phytoplankton changes in an artificially divided, top-down manipulated humic lake
    • Hehmann A., Krienitz L., Koschel R. Long-term phytoplankton changes in an artificially divided, top-down manipulated humic lake. Hydrobiologia 2001, 448:83-96.
    • (2001) Hydrobiologia , vol.448 , pp. 83-96
    • Hehmann, A.1    Krienitz, L.2    Koschel, R.3
  • 38
    • 0012179583 scopus 로고
    • Studies on freshwater bacteria. II. Stalked bacteria, a new order of Schizomycetes
    • Henrici A.T., Johnson D.E. Studies on freshwater bacteria. II. Stalked bacteria, a new order of Schizomycetes. J. Bacteriol. 1935, 30:61-93.
    • (1935) J. Bacteriol. , vol.30 , pp. 61-93
    • Henrici, A.T.1    Johnson, D.E.2
  • 39
    • 50049102753 scopus 로고    scopus 로고
    • Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH
    • Hoshino T., Yilmaz L.S., Noguera D.R., Daims H., Wagner M. Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH. Appl. Environ. Microbiol. 2008, 74:5068-5077.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 5068-5077
    • Hoshino, T.1    Yilmaz, L.S.2    Noguera, D.R.3    Daims, H.4    Wagner, M.5
  • 41
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 1998, 180:4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 42
    • 38349102157 scopus 로고    scopus 로고
    • Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
    • Islam T., Jensen S., Reigstad L.J., Larsen O., Birkeland N.K. Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc. Natl. Acad. Sci. USA 2008, 105:300-304.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 300-304
    • Islam, T.1    Jensen, S.2    Reigstad, L.J.3    Larsen, O.4    Birkeland, N.K.5
  • 43
    • 0030613344 scopus 로고    scopus 로고
    • Novel Anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen P.H., Schuhmann A., Mörschel E., Rainey F.A. Novel Anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl. Environ. Microbiol. 1997, 63:1382-1388.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1382-1388
    • Janssen, P.H.1    Schuhmann, A.2    Mörschel, E.3    Rainey, F.A.4
  • 45
    • 0001462334 scopus 로고
    • Enclosure experiments in food-web manipulation: first step-dividing the experimental lake
    • Kasprzak P., Koschel R., Steiner U., Metzdorf K. Enclosure experiments in food-web manipulation: first step-dividing the experimental lake. Limnologica 1988, 19:161-165.
    • (1988) Limnologica , vol.19 , pp. 161-165
    • Kasprzak, P.1    Koschel, R.2    Steiner, U.3    Metzdorf, K.4
  • 46
    • 0001607546 scopus 로고
    • The use of an artificially divided bog lake in food web studies
    • Kasprzak P. The use of an artificially divided bog lake in food web studies. Verh. Int. Ver. Limnol. 1993, 25:652-656.
    • (1993) Verh. Int. Ver. Limnol. , vol.25 , pp. 652-656
    • Kasprzak, P.1
  • 47
    • 0029178128 scopus 로고
    • Manipulation of whole lake ecosystems and long term limnological observations of the Brandenburg-Mecklenburg lake district
    • Koschel R. Manipulation of whole lake ecosystems and long term limnological observations of the Brandenburg-Mecklenburg lake district. Int. Rev. Gesamten Hydrobiol. 1995, 80:507-518.
    • (1995) Int. Rev. Gesamten Hydrobiol. , vol.80 , pp. 507-518
    • Koschel, R.1
  • 48
    • 61949150134 scopus 로고    scopus 로고
    • Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
    • Lee K.-C., Webb R.I., Janssen P.H., Sangwan P., Romeo T., Staley J.T., Fuerst J.A. Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol. 2009, 9:5.
    • (2009) BMC Microbiol. , vol.9 , pp. 5
    • Lee, K.-C.1    Webb, R.I.2    Janssen, P.H.3    Sangwan, P.4    Romeo, T.5    Staley, J.T.6    Fuerst, J.A.7
  • 49
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee S.Y., Bollinger J., Bezdicek D., Ogram A. Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 1996, 62:3787-3793.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3787-3793
    • Lee, S.Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 51
    • 1342333371 scopus 로고    scopus 로고
    • Response of a member of the Verrucomicrobia, among the dominating bacteria in a hypolimnion, to increased phosphorus availability
    • Lindström E.S., Vrede K., Leskinen E. Response of a member of the Verrucomicrobia, among the dominating bacteria in a hypolimnion, to increased phosphorus availability. J. Plankton Res 2004, 26:241-246.
    • (2004) J. Plankton Res , vol.26 , pp. 241-246
    • Lindström, E.S.1    Vrede, K.2    Leskinen, E.3
  • 52
    • 0036053784 scopus 로고    scopus 로고
    • Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila
    • López-García P., Gaill F., Moreira D. Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ. Microbiol. 2002, 4:204-215.
    • (2002) Environ. Microbiol. , vol.4 , pp. 204-215
    • López-García, P.1    Gaill, F.2    Moreira, D.3
  • 54
    • 0000698333 scopus 로고
    • Characterization of the adhesive holdfast of marine and freshwater caulobacters
    • Merker R.I., Smit J. Characterization of the adhesive holdfast of marine and freshwater caulobacters. Appl. Environ. Microbiol. 1988, 54:2078-2085.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2078-2085
    • Merker, R.I.1    Smit, J.2
  • 56
    • 33745119447 scopus 로고    scopus 로고
    • Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes
    • Newton R.J., Kent A.D., Triplett E.W., McMahon K.D. Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environ. Microbiol. 2006, 8:956-970.
    • (2006) Environ. Microbiol. , vol.8 , pp. 956-970
    • Newton, R.J.1    Kent, A.D.2    Triplett, E.W.3    McMahon, K.D.4
  • 57
    • 14344253895 scopus 로고    scopus 로고
    • Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
    • Noll M., Diethart M., Frenzel P., Manigee D., Liesack W. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 2005, 7:382-395.
    • (2005) Environ. Microbiol. , vol.7 , pp. 382-395
    • Noll, M.1    Diethart, M.2    Frenzel, P.3    Manigee, D.4    Liesack, W.5
  • 58
    • 0039702585 scopus 로고    scopus 로고
    • Detection of Verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes
    • O'Farrell K.A., Janssen P.H. Detection of Verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes. Appl. Environ. Microbiol. 1999, 65:4280-4284.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4280-4284
    • O'Farrell, K.A.1    Janssen, P.H.2
  • 59
    • 15944409588 scopus 로고    scopus 로고
    • Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective
    • Pallen M.J., Beatson S.A., Bailey C.M. Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective. FEMS Microbiol. Rev. 2005, 29:201-229.
    • (2005) FEMS Microbiol. Rev. , vol.29 , pp. 201-229
    • Pallen, M.J.1    Beatson, S.A.2    Bailey, C.M.3
  • 60
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler A., Pernthaler J., Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 2002, 68:3094-3101.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 61
    • 24944484336 scopus 로고    scopus 로고
    • Fate of heterotrophic microbes in pelagic habitats: focus on populations
    • Pernthaler J., Amann R. Fate of heterotrophic microbes in pelagic habitats: focus on populations. Microbiol. Mol. Biol. Rev. 2005, 69:440-461.
    • (2005) Microbiol. Mol. Biol. Rev. , vol.69 , pp. 440-461
    • Pernthaler, J.1    Amann, R.2
  • 62
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • Academic Press Inc. J. Paul (Ed.)
    • Pernthaler J., Glöckner F.O., Schönhuber W., Amann R. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods in Microbiology San Diego 2001, 207-226. Academic Press Inc. J. Paul (Ed.).
    • (2001) Methods in Microbiology San Diego , pp. 207-226
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 63
    • 0034652128 scopus 로고    scopus 로고
    • Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia
    • Petroni G., Spring S., Schleifer K.-H., Verni F., Rosati G. Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia. Proc. Natl. Acad. Sci. USA 2000, 97:1813-1817.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1813-1817
    • Petroni, G.1    Spring, S.2    Schleifer, K.-H.3    Verni, F.4    Rosati, G.5
  • 64
    • 42549084353 scopus 로고    scopus 로고
    • Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae and Planctomycetes and phylogenetic comparison with rRNA genes
    • Pilhofer M., Rappl K., Eckl C., Bauer A.P., Ludwig W., Schleifer K.H., Petroni G. Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae and Planctomycetes and phylogenetic comparison with rRNA genes. J. Bacteriol. 2008, 190:3192-3202.
    • (2008) J. Bacteriol. , vol.190 , pp. 3192-3202
    • Pilhofer, M.1    Rappl, K.2    Eckl, C.3    Bauer, A.P.4    Ludwig, W.5    Schleifer, K.H.6    Petroni, G.7
  • 65
    • 0018087772 scopus 로고
    • Selection for non-buoyant morphological mutants of Caulobacter crescentus
    • Pointdexter J.S. Selection for non-buoyant morphological mutants of Caulobacter crescentus. J. Bacteriol. 1978, 135:1141-1145.
    • (1978) J. Bacteriol. , vol.135 , pp. 1141-1145
    • Pointdexter, J.S.1
  • 67
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Prüsse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., Glöckner F.O. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acid Res. 2007, 35:7188-7196.
    • (2007) Nucleic Acid Res. , vol.35 , pp. 7188-7196
    • Prüsse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 69
    • 0034903098 scopus 로고    scopus 로고
    • Characterization of dissolved organic carbon (DOC) in a dystrophic lake and an adjacent fen
    • Sachse A., Babenzien D., Ginzel G., Gelbrecht J., Steinberg C. Characterization of dissolved organic carbon (DOC) in a dystrophic lake and an adjacent fen. Biogeochemistry 2001, 54:279-296.
    • (2001) Biogeochemistry , vol.54 , pp. 279-296
    • Sachse, A.1    Babenzien, D.2    Ginzel, G.3    Gelbrecht, J.4    Steinberg, C.5
  • 70
    • 33947592242 scopus 로고    scopus 로고
    • Reducing sludge production and the domination of Comamonadaceae by reducing the oxygen supply in the wastewater treatment procedure of a food-processing factory
    • Sadaie T., Sadaie A., Takada M., Hamano K., Ohnishi J., Ohta N., Matsumoto K., Sadaie Y. Reducing sludge production and the domination of Comamonadaceae by reducing the oxygen supply in the wastewater treatment procedure of a food-processing factory. Biosci. Biotechnol. Biochem. 2007, 71:791-799.
    • (2007) Biosci. Biotechnol. Biochem. , vol.71 , pp. 791-799
    • Sadaie, T.1    Sadaie, A.2    Takada, M.3    Hamano, K.4    Ohnishi, J.5    Ohta, N.6    Matsumoto, K.7    Sadaie, Y.8
  • 71
    • 0347596923 scopus 로고    scopus 로고
    • Isolation and characterization of a fucoidan-degrading marine bacterium
    • Sakai T., Ishizuka K., Kato I. Isolation and characterization of a fucoidan-degrading marine bacterium. Mar. Biotechnol. 2003, 5:409-416.
    • (2003) Mar. Biotechnol. , vol.5 , pp. 409-416
    • Sakai, T.1    Ishizuka, K.2    Kato, I.3
  • 72
    • 8144230745 scopus 로고    scopus 로고
    • Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia
    • Sangwan P., Chen X.L., Hugenholtz P., Janssen P.H. Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl. Environ. Microbiol. 2004, 70:5875-5881.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5875-5881
    • Sangwan, P.1    Chen, X.L.2    Hugenholtz, P.3    Janssen, P.H.4
  • 73
    • 33749031836 scopus 로고    scopus 로고
    • Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum 'Verrucomicrobia', isolated from a sponge (Porifera)
    • Scheuermayer M., Gulder T.A.M., Bringmann G., Hentschel U. Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum 'Verrucomicrobia', isolated from a sponge (Porifera). Int. J. Syst. Evol. Microbiol. 2006, 56:2119-2124.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2119-2124
    • Scheuermayer, M.1    Gulder, T.A.M.2    Bringmann, G.3    Hentschel, U.4
  • 74
    • 34547912014 scopus 로고    scopus 로고
    • The phylum Verrucomicrobia: a phylogenetically heterogeneous bacterial group
    • Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt (Eds.)
    • Schlesner H., Jenkins C., Staley J.T. The phylum Verrucomicrobia: a phylogenetically heterogeneous bacterial group. The Prokaryotes 2006, 881-896. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt (Eds.).
    • (2006) The Prokaryotes , pp. 881-896
    • Schlesner, H.1    Jenkins, C.2    Staley, J.T.3
  • 75
    • 0023473336 scopus 로고
    • Verrucomicrobium spinosum gen. nov., sp. nov.-a fimbriated prosthecate bacterium
    • Schlesner H. Verrucomicrobium spinosum gen. nov., sp. nov.-a fimbriated prosthecate bacterium. Syst. Appl. Microbiol. 1987, 10:54-56.
    • (1987) Syst. Appl. Microbiol. , vol.10 , pp. 54-56
    • Schlesner, H.1
  • 76
  • 77
    • 0026057964 scopus 로고
    • Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a
    • Shiba T. Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst. Appl. Microbiol. 1991, 14:140-145.
    • (1991) Syst. Appl. Microbiol. , vol.14 , pp. 140-145
    • Shiba, T.1
  • 78
    • 0031763685 scopus 로고    scopus 로고
    • Alterococcus agarolyticus, gen. nov., sp.nov., a halophilic thermophilic bacterium capable of agar degradation
    • Shieh W.Y., Jean W.D. Alterococcus agarolyticus, gen. nov., sp.nov., a halophilic thermophilic bacterium capable of agar degradation. Can. J. Microbiol. 1998, 44:637-645.
    • (1998) Can. J. Microbiol. , vol.44 , pp. 637-645
    • Shieh, W.Y.1    Jean, W.D.2
  • 79
    • 22444445245 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of the bacterial community in the gut of the termite Coptotermes formosanus
    • Shinzato N., Muramatsu M., Matsui T., Watanabe Y. Molecular phylogenetic diversity of the bacterial community in the gut of the termite Coptotermes formosanus. Biosci. Biotechnol. Biochem. 2005, 69:1145-1155.
    • (2005) Biosci. Biotechnol. Biochem. , vol.69 , pp. 1145-1155
    • Shinzato, N.1    Muramatsu, M.2    Matsui, T.3    Watanabe, Y.4
  • 80
    • 0034112276 scopus 로고    scopus 로고
    • Desulfacinum hydrothermale sp. nov., a thermophilic, sulfate-reducing bacterium from geothermally heated sediments near Milos Island (Greece)
    • Sievert S.M., Kuever J. Desulfacinum hydrothermale sp. nov., a thermophilic, sulfate-reducing bacterium from geothermally heated sediments near Milos Island (Greece). Int. J. Syst. Evol. Microbiol. 2000, 50:1239-1246.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1239-1246
    • Sievert, S.M.1    Kuever, J.2
  • 82
    • 1642283655 scopus 로고    scopus 로고
    • Assessment of equine fecal contamination: the search for alternative bacterial source-tracking targets
    • Simpson J.M., Santo Domingo J.W., Reasoner D.J. Assessment of equine fecal contamination: the search for alternative bacterial source-tracking targets. FEMS Microbiol. Ecol. 2004, 47:65-75.
    • (2004) FEMS Microbiol. Ecol. , vol.47 , pp. 65-75
    • Simpson, J.M.1    Santo Domingo, J.W.2    Reasoner, D.J.3
  • 83
    • 0030741576 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria in activated sludge
    • Snaidr J., Amann R., Huber I., Ludwig W., Schleifer K.H. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 1997, 63:2884-2896.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2884-2896
    • Snaidr, J.1    Amann, R.2    Huber, I.3    Ludwig, W.4    Schleifer, K.H.5
  • 84
    • 0016909999 scopus 로고
    • Prosthecobacter fusiformis nov. gen. et sp., the fusiform caulobacter
    • Staley J.T., de Bont J.A.M., de Jonge K. Prosthecobacter fusiformis nov. gen. et sp., the fusiform caulobacter. Antonie Van Leeuwenhoek 1976, 42:333-342.
    • (1976) Antonie Van Leeuwenhoek , vol.42 , pp. 333-342
    • Staley, J.T.1    de Bont, J.A.M.2    de Jonge, K.3
  • 85
    • 0000032269 scopus 로고
    • Cellular differentiation in stalked bacteria
    • Stove J.L., Stainier R.Y. Cellular differentiation in stalked bacteria. Nature 1962, 196:1189-1192.
    • (1962) Nature , vol.196 , pp. 1189-1192
    • Stove, J.L.1    Stainier, R.Y.2
  • 87
    • 0034521952 scopus 로고    scopus 로고
    • Occurrence of novel verrucomicrobial species, endosymbiotic and associated with parthenogenesis in Xiphinema americanum-group species (Nematoda, Longidoridae)
    • Vandekerckhove T.T.M., Willems A., Gillis M., Coomans A. Occurrence of novel verrucomicrobial species, endosymbiotic and associated with parthenogenesis in Xiphinema americanum-group species (Nematoda, Longidoridae). Int. J. Syst. Evol. Microbiol. 2000, 50:2197-2205.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 2197-2205
    • Vandekerckhove, T.T.M.1    Willems, A.2    Gillis, M.3    Coomans, A.4
  • 88
    • 0036272953 scopus 로고    scopus 로고
    • Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridization for detection of "Candidatus Xiphinematobacter" cells in nematode hosts
    • Vandekerckhove T.T.M., Coomans A., Cornelis K., Baert P., Gillis M. Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridization for detection of "Candidatus Xiphinematobacter" cells in nematode hosts. Appl. Environ. Microbiol. 2002, 68:3121-3125.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3121-3125
    • Vandekerckhove, T.T.M.1    Coomans, A.2    Cornelis, K.3    Baert, P.4    Gillis, M.5
  • 89
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • Wagner M., Horn M. The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opinion Biotechnol. 2006, 17:241-249.
    • (2006) Curr. Opinion Biotechnol. , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 90
    • 34249016262 scopus 로고    scopus 로고
    • Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan
    • Yoon J., Yasumoto-Hirose M., Katsuta A., Sekiguchi H., Matsuda S., Kasai H., Yokota A. Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan. Int. J. Syst. Evol. Microbiol. 2007, 57:959-963.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 959-963
    • Yoon, J.1    Yasumoto-Hirose, M.2    Katsuta, A.3    Sekiguchi, H.4    Matsuda, S.5    Kasai, H.6    Yokota, A.7
  • 91
    • 47249084286 scopus 로고    scopus 로고
    • Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomi
    • Yoon J., Matsuo Y., Adachi K., Nozawa M., Matsuda S., Kasai H., Yokota A. Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int. J. Syst. Evol. Microbiol. 2008, 58:998-1007.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 998-1007
    • Yoon, J.1    Matsuo, Y.2    Adachi, K.3    Nozawa, M.4    Matsuda, S.5    Kasai, H.6    Yokota, A.7
  • 92
    • 34848927281 scopus 로고    scopus 로고
    • Cerasicoccus arenae gen. nov., sp. nov., a carotenoid-producing marine representative of the family Puniceicoccaceae within the phylum 'Verrucomicrobia', isolated from marine sand
    • Yoon J., Matsuo Y., Matsuda S., Adachi K., Kasai H., Yokota A. Cerasicoccus arenae gen. nov., sp. nov., a carotenoid-producing marine representative of the family Puniceicoccaceae within the phylum 'Verrucomicrobia', isolated from marine sand. Int. J. Syst. Evol. Microbiol. 2007, 57:2067-2072.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 2067-2072
    • Yoon, J.1    Matsuo, Y.2    Matsuda, S.3    Adachi, K.4    Kasai, H.5    Yokota, A.6
  • 93
    • 34547406175 scopus 로고    scopus 로고
    • Pelagicoccus mobilis gen. nov., sp. nov., Pelagicoccus albus sp. nov. and Pelagicoccus litoralis sp. nov., three novel members of subdivision 4 within the phylum 'Verrucomicrobia', isolated from seawater by in situ cultivation
    • Yoon J., Yasumoto-Hirose M., Matsuo Y., Nozawa M., Matsuda S., Kasai H., Yokota A. Pelagicoccus mobilis gen. nov., sp. nov., Pelagicoccus albus sp. nov. and Pelagicoccus litoralis sp. nov., three novel members of subdivision 4 within the phylum 'Verrucomicrobia', isolated from seawater by in situ cultivation. Int. J. Syst. Evol. Microbiol. 2007, 57:1377-1385.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1377-1385
    • Yoon, J.1    Yasumoto-Hirose, M.2    Matsuo, Y.3    Nozawa, M.4    Matsuda, S.5    Kasai, H.6    Yokota, A.7
  • 94
    • 55849106648 scopus 로고    scopus 로고
    • Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'
    • Yoon J., Matsuo Y., Katsuta A., Jang J.-H., Matsuda S., Adachi K., Kasai H., Yokota A. Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'. Int. J. Syst. Evol. Microbiol. 2008, 58:2491-2500.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 2491-2500
    • Yoon, J.1    Matsuo, Y.2    Katsuta, A.3    Jang, J.-H.4    Matsuda, S.5    Adachi, K.6    Kasai, H.7    Yokota, A.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.