-
1
-
-
65149083962
-
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
-
Suzuki, H., Forrest, A.R., van Nimwegen, E., Daub, C.O., Balwierz, P.J., Irvine, K.M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M.J. et al. (2009) The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat. Genet., 41, 553-562.
-
(2009)
Nat. Genet.
, vol.41
, pp. 553-562
-
-
Suzuki, H.1
Forrest, A.R.2
Van Nimwegen, E.3
Daub, C.O.4
Balwierz, P.J.5
Irvine, K.M.6
Lassmann, T.7
Ravasi, T.8
Hasegawa, Y.9
De Hoon, M.J.10
-
2
-
-
79953886457
-
Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
-
Macneil, L.T. and Walhout, A.J. (2011) Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression. Genome Res., 21, 999.
-
(2011)
Genome Res.
, vol.21
, pp. 999
-
-
Macneil, L.T.1
Walhout, A.J.2
-
3
-
-
78951478823
-
Dedifferentiation, transdifferentiation and reprogramming: Three routes to regeneration
-
Jopling, C., Boue, S. and Izpisua Belmonte, J.C. (2011) Dedifferentiation, transdifferentiation and reprogramming: three routes to regeneration. Nat. Rev. Mol. Cell Biol., 12, 79-89.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 79-89
-
-
Jopling, C.1
Boue, S.2
Izpisua Belmonte, J.C.3
-
4
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi, K. and Yamanaka, S. (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell, 126, 663-676.
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
5
-
-
36248966518
-
Induction of pluripotent stem cells from adult human fibroblasts by defined factors
-
Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K. and Yamanaka, S. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell, 131, 861-872.
-
(2007)
Cell
, vol.131
, pp. 861-872
-
-
Takahashi, K.1
Tanabe, K.2
Ohnuki, M.3
Narita, M.4
Ichisaka, T.5
Tomoda, K.6
Yamanaka, S.7
-
6
-
-
80051674431
-
Direct generation of functional dopaminergic neurons from mouse and human fibroblasts
-
Caiazzo, M., Dell'Anno, M.T., Dvoretskova, E., Lazarevic, D., Taverna, S., Leo, D., Sotnikova, T.D., Menegon, A., Roncaglia, P., Colciago, G. et al. (2011) Direct generation of functional dopaminergic neurons from mouse and human fibroblasts. Nature, 476, 224-227.
-
(2011)
Nature
, vol.476
, pp. 224-227
-
-
Caiazzo, M.1
Dell'Anno, M.T.2
Dvoretskova, E.3
Lazarevic, D.4
Taverna, S.5
Leo, D.6
Sotnikova, T.D.7
Menegon, A.8
Roncaglia, P.9
Colciago, G.10
-
7
-
-
80053900492
-
Direct lineage conversion of terminally differentiated hepatocytes to functional neurons
-
Marro, S., Pang, Z.P., Yang, N., Tsai, M.C., Qu, K., Chang, H.Y., Sudhof, T.C. and Wernig, M. (2011) Direct lineage conversion of terminally differentiated hepatocytes to functional neurons. Cell Stem Cell, 9, 374-382.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 374-382
-
-
Marro, S.1
Pang, Z.P.2
Yang, N.3
Tsai, M.C.4
Qu, K.5
Chang, H.Y.6
Sudhof, T.C.7
Wernig, M.8
-
8
-
-
79960649307
-
Direct conversion of mouse fibroblasts to hepatocyte-like cells by defined factors
-
Sekiya, S. and Suzuki, A. (2011) Direct conversion of mouse fibroblasts to hepatocyte-like cells by defined factors. Nature, 475, 390-393.
-
(2011)
Nature
, vol.475
, pp. 390-393
-
-
Sekiya, S.1
Suzuki, A.2
-
9
-
-
77955321344
-
Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors
-
Ieda, M., Fu, J.D., Delgado-Olguin, P., Vedantham, V., Hayashi, Y., Bruneau, B.G. and Srivastava, D. (2010) Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors. Cell, 142, 375-386.
-
(2010)
Cell
, vol.142
, pp. 375-386
-
-
Ieda, M.1
Fu, J.D.2
Delgado-Olguin, P.3
Vedantham, V.4
Hayashi, Y.5
Bruneau, B.G.6
Srivastava, D.7
-
10
-
-
84863251358
-
Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts
-
Suzuki, T., Nakano-Ikegaya, M., Yabukami-Okuda, H., de Hoon, M., Severin, J., Saga-Hatano, S., Shin, J.W., Kubosaki, A., Simon, C., Hasegawa, Y. et al. (2012) Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts. PloS One, 7, e33474.
-
(2012)
PloS One
, vol.7
-
-
Suzuki, T.1
Nakano-Ikegaya, M.2
Yabukami-Okuda, H.3
De Hoon, M.4
Severin, J.5
Saga-Hatano, S.6
Shin, J.W.7
Kubosaki, A.8
Simon, C.9
Hasegawa, Y.10
-
11
-
-
84872395865
-
Identification of ZNF395 as a novel modulator of adipogenesis
-
Hasegawa, R., Tomaru, Y., de Hoon, M., Suzuki, H., Hayashizaki, Y. and Shin, J.W. (2013) Identification of ZNF395 as a novel modulator of adipogenesis. Exp. Cell Res., 319, 68-76.
-
(2013)
Exp. Cell Res.
, vol.319
, pp. 68-76
-
-
Hasegawa, R.1
Tomaru, Y.2
De Hoon, M.3
Suzuki, H.4
Hayashizaki, Y.5
Shin, J.W.6
-
12
-
-
84870600597
-
Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming
-
Shin, J.W., Suzuki, T., Ninomiya, N., Kishima, M., Hasegawa, Y., Kubosaki, A., Yabukami, H., Hayashizaki, Y. and Suzuki, H. (2012) Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming. Nucleic Acids Res., 40, e165.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Shin, J.W.1
Suzuki, T.2
Ninomiya, N.3
Kishima, M.4
Hasegawa, Y.5
Kubosaki, A.6
Yabukami, H.7
Hayashizaki, Y.8
Suzuki, H.9
-
13
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Ohi, Y., Qin, H., Hong, C., Blouin, L., Polo, J.M., Guo, T., Qi, Z., Downey, S.L., Manos, P.D., Rossi, D.J. et al. (2011) Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat. Cell Biol., 13, 541-549.
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 541-549
-
-
Ohi, Y.1
Qin, H.2
Hong, C.3
Blouin, L.4
Polo, J.M.5
Guo, T.6
Qi, Z.7
Downey, S.L.8
Manos, P.D.9
Rossi, D.J.10
-
14
-
-
84897406127
-
A promoter-level mammalian expression atlas
-
Fantom Consortium and the RIKEN PMI and CLST, The
-
Fantom Consortium and the RIKEN PMI and CLST, The (2014) A promoter-level mammalian expression atlas. Nature, 507, 462-470.
-
(2014)
Nature
, vol.507
, pp. 462-470
-
-
-
15
-
-
76249130293
-
Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis
-
Tomaru, Y., Simon, C., Forrest, A.R., Miura, H., Kubosaki, A., Hayashizaki, Y. and Suzuki, M. (2009) Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis. Genome Biol., 10, R121.
-
(2009)
Genome Biol.
, vol.10
-
-
Tomaru, Y.1
Simon, C.2
Forrest, A.R.3
Miura, H.4
Kubosaki, A.5
Hayashizaki, Y.6
Suzuki, M.7
-
16
-
-
62549098230
-
Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi
-
Tomaru, Y., Nakanishi, M., Miura, H., Kimura, Y., Ohkawa, H., Ohta, Y., Hayashizaki, Y. and Suzuki, M. (2009) Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi. Nucleic Acids Res., 37, 1049-1060.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1049-1060
-
-
Tomaru, Y.1
Nakanishi, M.2
Miura, H.3
Kimura, Y.4
Ohkawa, H.5
Ohta, Y.6
Hayashizaki, Y.7
Suzuki, M.8
-
17
-
-
22344449669
-
Constructing transcriptional regulatory networks
-
Blais, A. and Dynlacht, B.D. (2005) Constructing transcriptional regulatory networks. Genes Dev., 19, 1499-1511.
-
(2005)
Genes Dev.
, vol.19
, pp. 1499-1511
-
-
Blais, A.1
Dynlacht, B.D.2
-
18
-
-
84897438848
-
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
-
Severin, J., Lizio, M., Harshbarger, J., Kawaji, H., Daub, C.O., Hayashizaki, Y., Consortium, F., Bertin, N. and Forrest, A.R. (2014) Interactive visualization and analysis of large-scale sequencing datasets using ZENBU. Nat. Biotechnol., 32, 217-219.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 217-219
-
-
Severin, J.1
Lizio, M.2
Harshbarger, J.3
Kawaji, H.4
Daub, C.O.5
Hayashizaki, Y.6
Consortium, F.7
Bertin, N.8
Forrest, A.R.9
-
19
-
-
33749514099
-
Genomic analysis of the hierarchical structure of regulatory networks
-
Yu, H. and Gerstein, M. (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc. Natl. Acad Sci. U.S.A., 103, 14724-14731.
-
(2006)
Proc. Natl. Acad Sci. U.S.A.
, vol.103
, pp. 14724-14731
-
-
Yu, H.1
Gerstein, M.2
-
20
-
-
84886017663
-
Temporal dynamics and transcriptional control using single-cell gene expression analysis
-
Kouno, T., de Hoon, M., Mar, J.C., Tomaru, Y., Kawano, M., Carninci, P., Suzuki, H., Hayashizaki, Y. and Shin, J.W. (2013) Temporal dynamics and transcriptional control using single-cell gene expression analysis. Genome Biol., 14, R118.
-
(2013)
Genome Biol.
, vol.14
-
-
Kouno, T.1
De Hoon, M.2
Mar, J.C.3
Tomaru, Y.4
Kawano, M.5
Carninci, P.6
Suzuki, H.7
Hayashizaki, Y.8
Shin, J.W.9
-
21
-
-
34548567304
-
Cryopreserved human adipogenic-differentiated pre-adipocytes: A potential new source for adipose tissue regeneration
-
Kim, M., Kim, I., Kim, S.H., Jung, M., Han, S., Lee, J., Nam, J.S., Lee, S.K. and Bang, S. (2007) Cryopreserved human adipogenic-differentiated pre-adipocytes: a potential new source for adipose tissue regeneration. Cytotherapy, 9, 468-476.
-
(2007)
Cytotherapy
, vol.9
, pp. 468-476
-
-
Kim, M.1
Kim, I.2
Kim, S.H.3
Jung, M.4
Han, S.5
Lee, J.6
Nam, J.S.7
Lee, S.K.8
Bang, S.9
-
23
-
-
0038749582
-
Human mesenchymal stem cells as an in vitro model for human adipogenesis
-
Janderova, L., McNeil, M., Murrell, A.N., Mynatt, R.L. and Smith, S.R. (2003) Human mesenchymal stem cells as an in vitro model for human adipogenesis. Obes. Res., 11, 65-74.
-
(2003)
Obes. Res.
, vol.11
, pp. 65-74
-
-
Janderova, L.1
McNeil, M.2
Murrell, A.N.3
Mynatt, R.L.4
Smith, S.R.5
-
24
-
-
84879074469
-
Conversion of human fibroblasts to functional endothelial cells by defined factors
-
Li, J., Huang, N.F., Zou, J., Laurent, T.J., Lee, J.C., Okogbaa, J., Cooke, J.P. and Ding, S. (2013) Conversion of human fibroblasts to functional endothelial cells by defined factors. Arterioscler. Thromb. Vasc. Biol., 33, 1366-1375.
-
(2013)
Arterioscler. Thromb. Vasc. Biol.
, vol.33
, pp. 1366-1375
-
-
Li, J.1
Huang, N.F.2
Zou, J.3
Laurent, T.J.4
Lee, J.C.5
Okogbaa, J.6
Cooke, J.P.7
Ding, S.8
-
25
-
-
77953159822
-
Human iPS cell-based therapy: Considerations before clinical applications
-
Sun, N., Longaker, M.T. and Wu, J.C. (2010) Human iPS cell-based therapy: considerations before clinical applications. Cell Cycle, 9, 880-885.
-
(2010)
Cell Cycle
, vol.9
, pp. 880-885
-
-
Sun, N.1
Longaker, M.T.2
Wu, J.C.3
-
26
-
-
55849117368
-
Generation of mouse induced pluripotent stem cells without viral vectors
-
Okita, K., Nakagawa, M., Hyenjong, H., Ichisaka, T. and Yamanaka, S. (2008) Generation of mouse induced pluripotent stem cells without viral vectors. Science, 322, 949-953.
-
(2008)
Science
, vol.322
, pp. 949-953
-
-
Okita, K.1
Nakagawa, M.2
Hyenjong, H.3
Ichisaka, T.4
Yamanaka, S.5
-
27
-
-
33745108790
-
Hematopoietic stem cell gene transfer in a tumor-prone mouse model uncovers low genotoxicity of lentiviral vector integration
-
Montini, E., Cesana, D., Schmidt, M., Sanvito, F., Ponzoni, M., Bartholomae, C., Sergi Sergi, L., Benedicenti, F., Ambrosi, A., Di Serio, C. et al. (2006) Hematopoietic stem cell gene transfer in a tumor-prone mouse model uncovers low genotoxicity of lentiviral vector integration. Nat. Biotechnol., 24, 687-696.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 687-696
-
-
Montini, E.1
Cesana, D.2
Schmidt, M.3
Sanvito, F.4
Ponzoni, M.5
Bartholomae, C.6
Sergi Sergi, L.7
Benedicenti, F.8
Ambrosi, A.9
Di Serio, C.10
-
28
-
-
2542557397
-
Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi
-
Tanaka, T., Tomaru, Y., Nomura, Y., Miura, H., Suzuki, M. and Hayashizaki, Y. (2004) Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi. Nucleic Acids Res., 32, 2740-2750.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2740-2750
-
-
Tanaka, T.1
Tomaru, Y.2
Nomura, Y.3
Miura, H.4
Suzuki, M.5
Hayashizaki, Y.6
-
29
-
-
84878773916
-
SiRNA delivery: From basics to therapeutic applications
-
Musacchio, T. and Torchilin, V.P. (2013) siRNA delivery: from basics to therapeutic applications. Front. Biosci., 18, 58-79.
-
(2013)
Front. Biosci.
, vol.18
, pp. 58-79
-
-
Musacchio, T.1
Torchilin, V.P.2
-
30
-
-
33646354409
-
Activation of CCAAT/enhancer-binding protein (C/EBP) alpha expression by C/EBP beta during adipogenesis requires a peroxisome proliferator-activated receptor-gamma-associated repression of HDAC1 at the C/ebp alpha gene promoter
-
Zuo, Y., Qiang, L. and Farmer, S.R. (2006) Activation of CCAAT/enhancer-binding protein (C/EBP) alpha expression by C/EBP beta during adipogenesis requires a peroxisome proliferator-activated receptor-gamma- associated repression of HDAC1 at the C/ebp alpha gene promoter. J. Biol. Chem., 281, 7960-7967.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 7960-7967
-
-
Zuo, Y.1
Qiang, L.2
Farmer, S.R.3
-
31
-
-
34447313125
-
Both PPARgamma and C/EBPalpha are sufficient to induce transdifferentiation of goat fetal myoblasts into adipocytes
-
Yamanouchi, K., Ban, A., Shibata, S., Hosoyama, T., Murakami, Y. and Nishihara, M. (2007) Both PPARgamma and C/EBPalpha are sufficient to induce transdifferentiation of goat fetal myoblasts into adipocytes. J. Reprod. Dev., 53, 563-572.
-
(2007)
J. Reprod. Dev.
, vol.53
, pp. 563-572
-
-
Yamanouchi, K.1
Ban, A.2
Shibata, S.3
Hosoyama, T.4
Murakami, Y.5
Nishihara, M.6
-
32
-
-
0028641559
-
Stimulation of adipogenesis in fibroblasts by PPAR gamma 2, a lipid-activated transcription factor
-
Tontonoz, P., Hu, E. and Spiegelman, B.M. (1994) Stimulation of adipogenesis in fibroblasts by PPAR gamma 2, a lipid-activated transcription factor. Cell, 79, 1147-1156.
-
(1994)
Cell
, vol.79
, pp. 1147-1156
-
-
Tontonoz, P.1
Hu, E.2
Spiegelman, B.M.3
-
33
-
-
0032054230
-
Transcriptional control of adipogenesis
-
Fajas, L., Fruchart, J.C. and Auwerx, J. (1998) Transcriptional control of adipogenesis. Curr. Opin. Cell Biol., 10, 165-173.
-
(1998)
Curr. Opin. Cell Biol.
, vol.10
, pp. 165-173
-
-
Fajas, L.1
Fruchart, J.C.2
Auwerx, J.3
-
34
-
-
79959824776
-
Epigenetic codes of PPARgamma in metabolic disease
-
Sugii, S. and Evans, R.M. (2011) Epigenetic codes of PPARgamma in metabolic disease. FEBS Lett., 585, 2121-2128.
-
(2011)
FEBS Lett.
, vol.585
, pp. 2121-2128
-
-
Sugii, S.1
Evans, R.M.2
-
35
-
-
72949102015
-
The role of CCAAT/enhancer binding protein (C/EBP)-alpha in osteogenesis of C3H10T1/2 cells induced by BMP-2
-
Fan, Q., Tang, T., Zhang, X. and Dai, K. (2009) The role of CCAAT/enhancer binding protein (C/EBP)-alpha in osteogenesis of C3H10T1/2 cells induced by BMP-2. J. Cell. Mol. Med., 13, 2489-2505.
-
(2009)
J. Cell. Mol. Med.
, vol.13
, pp. 2489-2505
-
-
Fan, Q.1
Tang, T.2
Zhang, X.3
Dai, K.4
|