Auxin sensitivities of all arabidopsis aux/IAAs for degradation in the presence of every TIR1/AFB

Plant and Cell Physiology

Volumn 55, Issue 8, 2014, Pages 1450-1459

  Shimizu Mitao, Yasushi ^a   Kakimoto, Tatsuo ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

AFB; Arabidopsis thaliana; Aux IAA; Auxin; Sensitivity; TIR1

Indexed keywords

AFB5 PROTEIN, ARABIDOPSIS; ARABIDOPSIS PROTEIN; CELL SURFACE RECEPTOR; DNA BINDING PROTEIN; F BOX PROTEIN; IAA1 PROTEIN, ARABIDOPSIS; INDOLEACETIC ACID DERIVATIVE; NUCLEAR PROTEIN; PHYTOHORMONE; TIR1 PROTEIN, ARABIDOPSIS;

AMINO ACID SEQUENCE; ARABIDOPSIS; DRUG EFFECTS; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; PROTEIN DEGRADATION; REPORTER GENE; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION; TRANSGENIC PLANT; TWO HYBRID SYSTEM;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA-BINDING PROTEINS; F-BOX PROTEINS; GENE EXPRESSION REGULATION, PLANT; GENES, REPORTER; INDOLEACETIC ACIDS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PLANT GROWTH REGULATORS; PLANTS, GENETICALLY MODIFIED; PROTEOLYSIS; RECEPTORS, CELL SURFACE; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 84906057829     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcu077     Document Type: Article

References (56)

1. Abel, S., Oeller, P.W. and Theologis, A. (1994) Early auxin-induced genes encode short-lived nuclear proteins. Proc. Natl Acad. Sci. USA 91: 326-330.
2. Benkova, E., Michniewicz, M., Sauer, M., Teichmann, T., Seifertova, D., Jurgens, G. et al. (2003) Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602.
3. Brady, S.M., Orlando, D.A., Lee, J.Y., Wang, J.Y., Koch, J., Dinneny, J.R. et al. (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318: 801-806.
4. Calderon Villalobos, L.I., Lee, S., De Oliveira, C., Ivetac, A., Brandt, W., Armitage, L. et al. (2012) A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nat. Chem. Biol. 8: 477-485.
5. Calderon-Villalobos, L.I., Tan, X., Zheng, N. and Estelle, M. (2010) Auxin perception-structural insights. Cold Spring Harbor Perspect. Biol. 2: a005546.
6. Depuydt, S. and Hardtke, C.S. (2011) Hormone signalling crosstalk in plant growth regulation. Curr. Biol. 21: R365-R373.
7. Dharmasiri, N., Dharmasiri, S. and Estelle, M. (2005a) The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445.
8. Dharmasiri, N., Dharmasiri, S., Weijers, D., Lechner, E., Yamada, M., Hobbie, L. et al. (2005b) Plant development is regulated by a family of auxin receptor F box proteins. Dev. Cell 9: 109-119.
9. Dreher, K.A., Brown, J., Saw, R.E. and Callis, J. (2006) The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18: 699-714.
10. Dubrovsky, J.G., Sauer, M., Napsucialy-Mendivil, S., Ivanchenko, M.G., Friml, J., Shishkova, S. et al. (2008) Auxin acts as a local morpho-genetic trigger to specify lateral root founder cells. Proc. Natl Acad. Sci. USA 105: 8790-8794.
11. Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T. et al. (2003) Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153.
12. Gietz, R.D. and Woods, R.A. (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol. 350: 87-96.
13. Giraldo, J., Vivas, N.M., Vila, E. and Badia, A. (2002) Assessing the (a)symmetry of concentration-effect curves: empirical versus mechanistic models. Pharmacol. Ther. 95: 21-45.
14. Gray, W.M., Kepinski, S., Rouse, D., Leyser, O. and Estelle, M. (2001) Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins. Nature 414: 271-276.
15. Greenham, K., Santner, A., Castillejo, C., Mooney, S., Sairanen, I., Ljung, K. et al. (2011) The AFB4 auxin receptor is a negative regulator of auxin signaling in seedlings. Curr. Biol. 21: 520-525.
16. Guilfoyle, T.J. and Hagen, G. (2012) Getting a grasp on domain III/IV responsible for auxin response factor-IAA protein interactions. Plant Sci. 190: 82-88.
17. Havens, K.A., Guseman, J.M., Jang, S.S., Pierre-Jerome, E., Bolten, N., Klavins, E. et al. (2012) A synthetic approach reveals extensive tun-ability of auxin signaling. Plant Physiol. 160: 135-142.
18. Kanke, M., Nishimura, K., Kanemaki, M., Kakimoto, T., Takahashi, T.S., Nakagawa, T. et al. (2011) Auxin-inducible protein depletion system in fission yeast. BMC Cell Biol. 12: 8.
19. Karcz, W. and Burdach, Z. (2002) A comparison of the effects of IAA and 4-Cl-IAA on growth, proton secretion and membrane potential in maize coleoptile segments. J. Exp. Bot. 53: 1089-1098.
20. Katayama, M. (2000) Synthesis and biological activities of 4-chloroin-dole-3-acetic acid and its esters. Biosci. Biotechnol. Biochem. 64: 808-815.
21. Kepinski, S. and Leyser, O. (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446-451.
22. Kim, J., Harter, K. and Theologis, A. (1997) Protein-protein interactions among the Aux/IAA proteins. Proc. Natl Acad. Sci. USA 94: 11786-11791.
23. Leyser, O. (2002) Molecular genetics of auxin signaling. Annu. Rev. Plant Biol. 53: 377-398.
24. Liscum, E. and Briggs, W.R. (1996) Mutations of Arabidopsis in potential transduction and response components of the phototropic signaling pathway. Plant Physiol. 112: 291-296.
25. Lokerse, A.S. and Weijers, D. (2009) Auxin enters the matrix-assembly of response machineries for specific outputs. Curr. Opin. Plant Biol. 12: 520-526.
26. Long, J.A., Woody, S., Poethig, S., Meyerowitz, E.M. and Barton, K. (2002) Transformation of shoots into roots in Arabidopsis embryos mutant at the TOPLESS locus. Development 129: 2797-2806.
27. Mattsson, J., Ckurshumova, W. and Berleth, T. (2003) Auxin signaling in Arabidopsis leaf vascular development. Plant Physiol. 131: 1327-1339.
28. Mockaitis, K. and Estelle, M. (2008) Auxin receptors and plant development: a new signaling paradigm. Annu. Rev. Cell Dev. Biol. 24: 55-80.
29. Mumberg, D., Muller, R. and Funk, M. (1995) Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156: 119-122.
30. Nishimura, K., Fukagawa, T., Takisawa, H., Kakimoto, T. and Kanemaki, M. (2009) An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat. Methods 6: 917-922.
31. Oeller, P.W., Keller, J.A., Parks, J.E., Silbert, J.E. and Theologis, A. (1993) Structural characterization of the early indoleacetic acid-inducible genes, PS-IAA4/5 and PS-IAA6, of pea (Pisum sativum L.). J. Mol. Biol. 233: 789-798.
32. Okushima, Y., Fukaki, H., Onoda, M., Theologis, A. and Tasaka, M. (2007) ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19: 118-130.
33. Okushima, Y., Mitina, I., Quach, H.L. and Theologis, A. (2005) AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator. Plant J. 43: 29-46.
34. Parry, G., Calderon-Villalobos, L.I., Prigge, M., Peret, B., Dharmasiri, S., Itoh, H. et al. (2009) Complex regulation of the TIR1/AFB family of auxin receptors. Proc. Natl Acad. Sci. USA 106: 22540-22545.
35. Porter, W.L. and Thimann, K.V. (1965) Molecular requirements for auxin action-I. Phytochemistry 4: 229-243.
36. Rao, R.P., Hunter, A., Kashpur, O. and Normanly, J. (2010) Aberrant synthesis of indole-3-acetic acid in Saccharomyces cerevisiae triggers morphogenic transition, a virulence trait of pathogenic fungi. Genetics 185: 211-220.
37. Rashotte, A.M., Brady, S.R., Reed, R.C., Ante, S.J. and Muday, G.K. (2000) Basipetal auxin transport is required for gravitropism in roots of arabidopsis. Plant Physiol. 122: 481-490.
38. Reed, J.W. (2001) Roles and activities of Aux/IAA proteins in Arabidopsis. Trends Plant Sci. 6: 420-425.
39. Reinecke, D.M. (1999) 4-Chloroindole-3-acetic acid and plant growth. Plant Growth Regul. 27: 3-13.
40. Reinhardt D., Mandel, T. and Kuhlemeier, C. (2000) Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12: 507-518.
41. Robinson, T.W. and Stier, T.J. (1941) Formation of auxin in yeast cultures. J. Gen. Physiol. 24: 765-769.
42. Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J. and Estelle, M. (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p. Genes Dev. 12: 198-207.
43. Sauer, M., Robert, S. and Kleine-Vehn, J. (2013) Auxin: simply complicated. J. Exp. Bot. 64: 2565-2577.
44. Sikorski, R.S. and Hieter, P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
45. Szemenyei, H., Hannon, M. and Long, J.A. (2008) TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 319: 1384-1386.
46. Tan, X., Calderon-Villalobos, L.I., Sharon, M., Zheng, C., Robinson, C.V., Estelle, M. et al. (2007) Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446: 640-645.
47. Thimann, K.V. (1937) On the nature of inhibition caused by auxin. Amer. J. Bot. 24: 407-412.
48. Ulmasov, T. (1997) ARF1, a transcription factor that binds to auxin response elements. Science 276: 1865-1868.
49. Vernoux, T., Brunoud, G., Farcot, E., Morin, V., Van den Daele, H., Legrand, J. et al. (2011) The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol. Syst. Biol. 7: 508.
50. Walsh, T.A., Neal, R., Merlo, A.O., Honma, M., Hicks, G.R., Wolff, K. et al. (2006) Mutations in an auxin receptor homolog AFB5 and in SGT1b confer resistance to synthetic picolinate auxins and not to 2, 4-dichlorophenoxyacetic acid or indole-3-acetic acid in Arabidopsis. Plant Physiol. 142: 542-552.
51. Weijers, D., Benkova, E., Jager, K.E., Schlereth, A., Hamann, T., Kientz, M. et al. (2005) Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO J. 24: 1874-1885.
52. Wightman, F. and Lighty, D.L. (1982) Identification of phenylacetic acid as a natural auxin in the shoots of higher plants. Physiol. Plant. 55: 17-24.
53. Wilson, A.K., Pickett, F.B., Turner, J.C. and Estelle, M. (1990) A dominant mutation in Arabidopsis confers resistance to auxin, ethylene and abscisic acid. Mol. Gen. Genet. 222: 377-383.
54. Worley, C.K., Zenser, N., Ramos, J., Rouse, D., Leyser, O., Theologis, A. et al. (2000) Degradation of Aux/IAA proteins is essential for normal auxin signalling. Plant J. 21: 553-562.
55. Xu, T., Dai, N., Chen, J., Nagawa, S., Cao, M., Li, H. et al. (2014) Cell surface ABP1-TMK auxin-sensing complex activates ROP GTPase signaling. Science 343: 1025-1028.
56. Yadav, R.K., Girke, T., Pasala, S., Xie, M. and Reddy, G.V. (2009) Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc. Natl Acad. Sci. USA 106: 4941-4946.