-
1
-
-
0026557391
-
-
10.1111/j.1432-1033.1992.tb19824.x
-
Ch. L. Hew and D. S. C. Yang, Eur. J. Biochem. 203, 33 (1992). 10.1111/j.1432-1033.1992.tb19824.x
-
(1992)
Eur. J. Biochem.
, vol.203
, pp. 33
-
-
Hew, Ch.L.1
Yang, D.S.C.2
-
2
-
-
80053355693
-
-
10.1186/1472-6807-11-36
-
C. P. Garnham, R. L. Campbell, V. K. Walker, and P. L. Davies, BMC Struct. Biol. 11, 36 (2011). 10.1186/1472-6807-11-36
-
(2011)
BMC Struct. Biol.
, vol.11
, pp. 36
-
-
Garnham, C.P.1
Campbell, R.L.2
Walker, V.K.3
Davies, P.L.4
-
3
-
-
77950380863
-
-
10.1073/pnas.0909456107
-
Y. Celik, L. A. Graham, Y.-F. Mok, M. Bar, P. L. Davies, and I. Braslavsky, Proc. Natl. Acad. Sci. U.S.A. 107, 5423 (2010). 10.1073/pnas. 0909456107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 5423
-
-
Celik, Y.1
Graham, L.A.2
Mok, Y.-F.3
Bar, M.4
Davies, P.L.5
Braslavsky, I.6
-
4
-
-
84872836238
-
-
10.1073/pnas.1213603110
-
Y. Celik, R. Drori, N. Pertaya-Braun, A. Altan, T. Barton, M. Bar-Dolev, A. Groisman, P. L. Davies, and I. Braslavsky, Proc. Natl. Acad. Sci. U.S.A. 110, 1309 (2013). 10.1073/pnas.1213603110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 1309
-
-
Celik, Y.1
Drori, R.2
Pertaya-Braun, N.3
Altan, A.4
Barton, T.5
Bar-Dolev, M.6
Groisman, A.7
Davies, P.L.8
Braslavsky, I.9
-
5
-
-
9144257407
-
-
10.1021/cr950260c
-
Y. Yeh and R. E. Feeney, Chem. Rev. 96, 601 (1996). 10.1021/cr950260c
-
(1996)
Chem. Rev.
, vol.96
, pp. 601
-
-
Yeh, Y.1
Feeney, R.E.2
-
7
-
-
0037193987
-
-
10.1098/rstb.2002.1081
-
P. L. Davies, J. Baardsnes, M. J. Kuiper, and V. K. Walker, Philos. Trans. R. Soc. London, Ser. B 357, 927 (2002). 10.1098/rstb.2002.1081
-
(2002)
Philos. Trans. R. Soc. London, Ser. B
, vol.357
, pp. 927
-
-
Davies, P.L.1
Baardsnes, J.2
Kuiper, M.J.3
Walker, V.K.4
-
10
-
-
61549095245
-
-
10.1021/cg800269w
-
S. Zepeda, E. Yokoyama, Y. Uda, C. Katagiri, and Y. Furukawa, Cryst. Growth Des. 8, 3666 (2008). 10.1021/cg800269w
-
(2008)
Cryst. Growth Des.
, vol.8
, pp. 3666
-
-
Zepeda, S.1
Yokoyama, E.2
Uda, Y.3
Katagiri, C.4
Furukawa, Y.5
-
12
-
-
34548647991
-
-
10.1529/biophysj.107.105189
-
A. Wierzbicki, P. Dalal, T. E. Cheatham, J. E. Knickelbein, A. D. J. Haymet, and J. D. Madura, Biophys. J. 93, 1442 (2007). 10.1529/biophysj.107. 105189
-
(2007)
Biophys. J.
, vol.93
, pp. 1442
-
-
Wierzbicki, A.1
Dalal, P.2
Cheatham, T.E.3
Knickelbein, J.E.4
Haymet, A.D.J.5
Madura, J.D.6
-
13
-
-
0032567416
-
-
10.1074/jbc.273.52.34806
-
W. Zhang and R. A. Laursen, J. Biol. Chem. 273, 34806 (1998). 10.1074/jbc.273.52.34806
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 34806
-
-
Zhang, W.1
Laursen, R.A.2
-
14
-
-
1642587769
-
-
10.1016/j.bpc.2003.10.024
-
C. Yang and K. A. Sharp, Biophys. Chem. 109, 137 (2004). 10.1016/j.bpc.2003.10.024
-
(2004)
Biophys. Chem.
, vol.109
, pp. 137
-
-
Yang, C.1
Sharp, K.A.2
-
15
-
-
16344378406
-
-
10.1002/prot.20429
-
C. Yang and K. A. Sharp, Proteins 59, 266 (2005). 10.1002/prot.20429
-
(2005)
Proteins
, vol.59
, pp. 266
-
-
Yang, C.1
Sharp, K.A.2
-
17
-
-
58149264833
-
-
10.1002/qua.21857
-
J. Cui, K. Battle, A. Wierzbicki, and J. D. Madura, Int. J. Quantum Chem. 109, 73 (2009). 10.1002/qua.21857
-
(2009)
Int. J. Quantum Chem.
, vol.109
, pp. 73
-
-
Cui, J.1
Battle, K.2
Wierzbicki, A.3
Madura, J.D.4
-
19
-
-
0001158716
-
-
P. Dalal, J. Knickelbein, A. D. J. Haymet, F. D. Sonnichsen, and J. D. Madura, PhysChemComm 7, 1 (2001).
-
(2001)
PhysChemComm
, vol.7
, pp. 1
-
-
Dalal, P.1
Knickelbein, J.2
Haymet, A.D.J.3
Sonnichsen, F.D.4
Madura, J.D.5
-
22
-
-
0034691568
-
-
10.1038/35018604
-
Y.-C. Liou, A. Tocilj, P. L. Davies, and Z. Jia, Nature (London) 406, 322 (2000). 10.1038/35018604
-
(2000)
Nature (London)
, vol.406
, pp. 322
-
-
Liou, Y.-C.1
Tocilj, A.2
Davies, P.L.3
Jia, Z.4
-
23
-
-
0034691594
-
-
10.1038/35018610
-
S. P. Graether, M. J. Kuiper, S. M. Gagne, V. K. Walker, Z. Jia, B. D. Sykes, and P. L. Davies, Nature (London) 406, 325 (2000). 10.1038/35018610
-
(2000)
Nature (London)
, vol.406
, pp. 325
-
-
Graether, S.P.1
Kuiper, M.J.2
Gagne, S.M.3
Walker, V.K.4
Jia, Z.5
Sykes, B.D.6
Davies, P.L.7
-
24
-
-
79953791129
-
-
10.1002/jmr.1130
-
E. I. Howard, M. P. Blakeley, M. Haertlein, I. Petit-Haertlein, A. Mitschler, S. J. Fisher, A. Cousido-Siah, A. G. Salvay, A. Popov, C. Muller-Dieckman, T. Petrva, and A. Podjarny, J. Mol. Recognit. 24, 724 (2011). 10.1002/jmr.1130
-
(2011)
J. Mol. Recognit.
, vol.24
, pp. 724
-
-
Howard, E.I.1
Blakeley, M.P.2
Haertlein, M.3
Petit-Haertlein, I.4
Mitschler, A.5
Fisher, S.J.6
Cousido-Siah, A.7
Salvay, A.G.8
Popov, A.9
Muller-Dieckman, C.10
Petrva, T.11
Podjarny, A.12
-
27
-
-
84873141738
-
-
10.1073/pnas.1214911110
-
K. Meister, S. Ebbinghaus, Y. Xu, J. G. Duman, A. L. DeVries, M. Gruebele, D. M. Leitner, and M. Havenith, Proc. Natl. Acad. Sci. U. S. A. 110, 1617 (2013). 10.1073/pnas.1214911110
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 1617
-
-
Meister, K.1
Ebbinghaus, S.2
Xu, Y.3
Duman, J.G.4
Devries, A.L.5
Gruebele, M.6
Leitner, D.M.7
Havenith, M.8
-
28
-
-
77956248049
-
-
10.1021/ja1051632
-
S. Ebbinghaus, K. Meister, B. Born, A. L. DeVries, M. Gruebele, and M. Havenith, J. Am. Chem. Soc. 132, 12210 (2010). 10.1021/ja1051632
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12210
-
-
Ebbinghaus, S.1
Meister, K.2
Born, B.3
Devries, A.L.4
Gruebele, M.5
Havenith, M.6
-
29
-
-
38049115489
-
-
10.1073/pnas.0709207104
-
S. Ebbihghaus, S. J. Kim, M. Heyden, X. Yu, U. Heugen, M. Gruebele, D. M. Leitner, and M. Havenith, Proc. Natl. Acad. Sci. U. S. A. 104, 20749 (2007). 10.1073/pnas.0709207104
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 20749
-
-
Ebbihghaus, S.1
Kim, S.J.2
Heyden, M.3
Yu, X.4
Heugen, U.5
Gruebele, M.6
Leitner, D.M.7
Havenith, M.8
-
30
-
-
84864752132
-
-
10.1016/j.bpj.2012.06.013
-
S. Ebbinghaus, K. Meister, M. B. Prigozhin, A. L. DeVries, M. Havenith, J. Dzubiella, and M. Gruebele, Biphys. J. 103, L20 (2012). 10.1016/j.bpj.2012. 06.013
-
(2012)
Biphys. J.
, vol.103
-
-
Ebbinghaus, S.1
Meister, K.2
Prigozhin, M.B.3
Devries, A.L.4
Havenith, M.5
Dzubiella, J.6
Gruebele, M.7
-
31
-
-
77957999861
-
-
10.1039/c002970j
-
K. Modig, J. Qvist, C. B. Marshall, P. L. Davies, and B. Halle, Phys. Chem. Chem. Phys. 12, 10189 (2010). 10.1039/c002970j
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 10189
-
-
Modig, K.1
Qvist, J.2
Marshall, C.B.3
Davies, P.L.4
Halle, B.5
-
34
-
-
33748447468
-
-
10.1016/j.cryobiol.2006.06.006
-
A. J. Scotter, C. B. Marshall, L. A. Graham, J. A. Gilbert, C. P. Garnham, and P. L. Davies, Cryobiology 53, 229 (2006). 10.1016/j.cryobiol.2006. 06.006
-
(2006)
Cryobiology
, vol.53
, pp. 229
-
-
Scotter, A.J.1
Marshall, C.B.2
Graham, L.A.3
Gilbert, J.A.4
Garnham, C.P.5
Davies, P.L.6
-
36
-
-
0042530271
-
-
10.1103/PhysRevLett.91.025502
-
R. Zangi and A. E. Mark, Phys. Rev. Lett. 91, 025502 (2003). 10.1103/PhysRevLett.91.025502
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 025502
-
-
Zangi, R.1
Mark, A.E.2
-
43
-
-
78049368021
-
-
10.1074/jbc.M110.171983
-
P. W. Wilson, K. E. Osterday, A. F. Heneghan, and A. D. J. Haymet, J. Biol. Chem. 285, 34741 (2010). 10.1074/jbc.M110.171983
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 34741
-
-
Wilson, P.W.1
Osterday, K.E.2
Heneghan, A.F.3
Haymet, A.D.J.4
-
44
-
-
5444242710
-
-
10.1021/la048958l
-
D. R. Nutt and A. J. Stone, Langmuir 20, 8715 (2004). 10.1021/la048958l
-
(2004)
Langmuir
, vol.20
, pp. 8715
-
-
Nutt, D.R.1
Stone, A.J.2
-
45
-
-
58049201323
-
-
(University of California, San Francisco).
-
D. A. Case, T. A. Darden, T. E. Cheatham III, C. L. Simmerling, J. Wang, R. E. Duke, R. Luo, M. Crowley, R. C. Walker, W. Zhang, K. M. Merz, B. Wang, S. Hayik, A. Roitberg, G. Seabra, I. Kolossvaáry, K. F. Wong, F. Paesani, J. Vanicek, X. Wu, S. R. Brozell, T. Steinbrecher, H. Gohlke, L. Yang, C. Tan, J. Mongan, V. Hornak, G. Cui, D. H. Mathews, M. G. Seetin, C. Sagui, V. Babin, and P. A. Kollman, AMBER 10 (University of California, San Francisco, 2008).
-
(2008)
AMBER 10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Walker, R.C.9
Zhang, W.10
Merz, K.M.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossvaáry, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Wu, X.20
Brozell, S.R.21
Steinbrecher, T.22
Gohlke, H.23
Yang, L.24
Tan, C.25
Mongan, J.26
Hornak, V.27
Cui, G.28
Mathews, D.H.29
Seetin, M.G.30
Sagui, C.31
Babin, V.32
Kollman, P.A.33
more..
-
46
-
-
0242663237
-
-
10.1002/jcc.10349
-
Y. Duan, C. Wu, S. Chowdhury, M. C. Lee, G. M. Xiong, W. Zhang, R. Yang, P. Cieplak, R. Luo, T. Lee, J. Caldwell, J. M. Wang, and P. Kollman, J. Comput. Chem. 24, 1999 (2003). 10.1002/jcc.10349
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1999
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.M.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.M.12
Kollman, P.13
-
52
-
-
0034644141
-
-
10.1038/35018034
-
A. Scala, F. W. Starr, E. La Nave, F. Sciortino, and H. E. Stanley, Nature (London) 406, 166 (2000). 10.1038/35018034
-
(2000)
Nature (London)
, vol.406
, pp. 166
-
-
Scala, A.1
Starr, F.W.2
La Nave, E.3
Sciortino, F.4
Stanley, H.E.5
-
54
-
-
79958137381
-
-
10.1140/epje/i2011-11048-1
-
S. R. Accordino, J. A. Rodriguez Fris, F. Sciortino, and G. A. Appignanesi, Eur. Phys. J. E: Soft Matter Biol. Phys. 34, 48 (2011). 10.1140/epje/i2011-11048-1
-
(2011)
Eur. Phys. J. E: Soft Matter Biol. Phys.
, vol.34
, pp. 48
-
-
Accordino, S.R.1
Rodriguez Fris, J.A.2
Sciortino, F.3
Appignanesi, G.A.4
-
61
-
-
0000989338
-
-
10.1103/PhysRevLett.80.5750
-
H. Tanaka, Phys. Rev. Lett. 80, 5750 (1998). 10.1103/PhysRevLett.80.5750
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 5750
-
-
Tanaka, H.1
-
62
-
-
0000377171
-
-
10.1063/1.480609
-
H. Tanaka, J. Chem. Phys. 112, 799 (2000). 10.1063/1.480609
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 799
-
-
Tanaka, H.1
-
64
-
-
47749118313
-
-
10.1021/jp7103837
-
J. Zielkiewicz, J. Phys. Chem. B 112, 7810 (2008). 10.1021/jp7103837
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 7810
-
-
Zielkiewicz, J.1
-
65
-
-
0006143842
-
-
10.1063/1.465635
-
G. Ruocco, M. Sampoli, A. Torcini, and R. Vallauri, J. Chem. Phys. 99, 8095 (1993). 10.1063/1.465635
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 8095
-
-
Ruocco, G.1
Sampoli, M.2
Torcini, A.3
Vallauri, R.4
-
66
-
-
0024354001
-
-
10.1016/0022-2836(89)90093-4
-
C. L. Brooks and M. Karplus, J. Mol. Biol. 208, 159 (1989). 10.1016/0022-2836(89)90093-4
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 159
-
-
Brooks, C.L.1
Karplus, M.2
-
67
-
-
84874182108
-
-
10.1021/jp310649n
-
N. Galamba, J. Phys. Chem. B 117, 2153 (2013). 10.1021/jp310649n
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 2153
-
-
Galamba, N.1
-
70
-
-
36849101808
-
-
10.1063/1.1676399
-
H. J. Raveché, J. Chem. Phys. 55, 2242 (1971). 10.1063/1.1676399
-
(1971)
J. Chem. Phys.
, vol.55
, pp. 2242
-
-
Raveché, H.J.1
-
71
-
-
0000116263
-
-
10.1103/PhysRevA.40.3817
-
A. Baranyai and D. J. Evans, Phys. Rev. A 40, 3817 (1989). 10.1103/PhysRevA.40.3817
-
(1989)
Phys. Rev. A
, vol.40
, pp. 3817
-
-
Baranyai, A.1
Evans, D.J.2
-
73
-
-
0344667150
-
-
10.1063/1.453158
-
D. C. Wallace, J. Chem. Phys. 87, 2282 (1987). 10.1063/1.453158
-
(1987)
J. Chem. Phys.
, vol.87
, pp. 2282
-
-
Wallace, D.C.1
-
74
-
-
6644226067
-
-
10.1103/PhysRevA.39.4843
-
D. C. Wallace, Phys. Rev. A 39, 4843 (1989). 10.1103/PhysRevA.39.4843
-
(1989)
Phys. Rev. A
, vol.39
, pp. 4843
-
-
Wallace, D.C.1
-
80
-
-
0001700714
-
-
10.1021/jp9723574
-
T. Lazaridis, J. Phys. Chem. B 102, 3531 (1998). 10.1021/jp9723574
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3531
-
-
Lazaridis, T.1
-
81
-
-
0001700713
-
-
10.1021/jp972358w
-
T. Lazaridis, J. Phys. Chem. B 102, 3542 (1998). 10.1021/jp972358w
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3542
-
-
Lazaridis, T.1
-
84
-
-
44349145978
-
-
10.1063/1.2921161
-
J. Zielkiewicz, J. Chem. Phys. 128, 196101 (2008). 10.1063/1.2921161
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 196101
-
-
Zielkiewicz, J.1
-
86
-
-
33645971315
-
-
(R). 10.1103/PhysRevE.73.040502
-
R. Esposito, F. Saija, A. M. Saitta, and P. V. Giaquinta, Phys. Rev. E 73, 040502 (R) (2006). 10.1103/PhysRevE.73.040502
-
(2006)
Phys. Rev. e
, vol.73
, pp. 040502
-
-
Esposito, R.1
Saija, F.2
Saitta, A.M.3
Giaquinta, P.V.4
-
87
-
-
25144473562
-
-
10.1063/1.2018637
-
J. Zielkiewicz, J. Chem. Phys. 123, 104501 (2005); 10.1063/1.2018637
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 104501
-
-
Zielkiewicz, J.1
-
88
-
-
34547139157
-
-
(Erratum). 10.1063/1.2178809
-
J. Zielkiewicz, J. Chem. Phys. 124, 109901 (2006) (Erratum). 10.1063/1.2178809
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 109901
-
-
Zielkiewicz, J.1
-
90
-
-
30544441077
-
-
10.1021/jp0526750
-
H. Xu and K. A. Dill, J. Phys. Chem. B 109, 23611 (2005). 10.1021/jp0526750
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 23611
-
-
Xu, H.1
Dill, K.A.2
-
91
-
-
84906044961
-
-
See supplementary material at http://dx.doi.org/10.1063/1.4891810 E-JCPSA6-141-016430 for definition of solvation layer of the protein, calculations of local density change, further comparison of SPC/E and TIP5P water models and discussion about disturbing influence of chloride ions on the structure and dynamics of water.
-
-
-
|