메뉴 건너뛰기




Volumn 8, Issue 10, 2014, Pages 2029-2044

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

Author keywords

alkane oxidation; cold seep; masD; oil degradation; stable isotope probing

Indexed keywords

BIODEGRADATION; BIOGEOCHEMICAL CYCLE; IDENTIFICATION KEY; ISOTOPIC ANALYSIS; OIL SPILL; SULFATE-REDUCING BACTERIUM;

EID: 84906051858     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.51     Document Type: Article
Times cited : (146)

References (95)
  • 2
    • 79952185579 scopus 로고    scopus 로고
    • Structure of microbial communities and hydrocarbondepend ent sulfate reduction in the anoxic layer of a polluted microbial mat
    • Abed RMM, Musat N, Musat F, Mu-mann M. (2011). Structure of microbial communities and hydrocarbondepend ent sulfate reduction in the anoxic layer of a polluted microbial mat. Mar Pollut Bull 62: 539-546.
    • (2011) Mar Pollut Bull , vol.62 , pp. 539-546
    • Abed, R.M.M.1    Musat, N.2    Musat, F.3    Mu-Mann, M.4
  • 3
    • 84871858193 scopus 로고    scopus 로고
    • Characterization of the anaerobic microbial communi ty in oil-polluted subtidal sediments: Aromatic biodegradation potential after the Prestige oil spill
    • Acosta-González A, Rosselló-Móra R, Marqués S. (2013). Characterization of the anaerobic microbial communi ty in oil-polluted subtidal sediments: aromatic biodegradation potential after the Prestige oil spill. Environ Microbiol 15: 77-92.
    • (2013) Environ Microbiol , vol.15 , pp. 77-92
    • Acosta-González, A.1    Rosselló-Móra, R.2    Marqués, S.3
  • 4
    • 84884260032 scopus 로고    scopus 로고
    • Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: Potential influences on sulfur cycling and microbial diversity
    • Adams MM, Hoarfrost AL, Bose A, Joye SB, Girguis PR. (2013). Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity. Frontiers in Microbiology 4: 110.
    • (2013) Frontiers in Microbiology , vol.4 , pp. 110
    • Adams, M.M.1    Hoarfrost, A.L.2    Bose, A.3    Joye, S.B.4    Girguis, P.R.5
  • 5
    • 0031694750 scopus 로고    scopus 로고
    • Growth, natural relationships, cellular fatty acids and metabolic adaptation of sulfate-reducing bacteria that utilize long-chain alkanes under anoxic conditio ns
    • Aeckersberg F, Rainey FA, Widdel F. (1998). Growth, natural relationships, cellular fatty acids and metabolic adaptation of sulfate-reducing bacteria that utilize long-chain alkanes under anoxic conditio ns. Arch Microbiol 170: 361-369.
    • (1998) Arch Microbiol , vol.170 , pp. 361-369
    • Aeckersberg, F.1    Rainey, F.A.2    Widdel, F.3
  • 7
    • 33746895151 scopus 로고    scopus 로고
    • Improved method for isotopic and quantitative analysis of dissolved inorganic carbon in natural water samples
    • Assayag N, RivéK, Ader M, Jézéquel D, Agrinier P. (2006). Improved method for isotopic and quantitative analysis of dissolved inorganic carbon in natural water samples. Rapid Commun Mass Spectrom 20: 2243-2251.
    • (2006) Rapid Commun Mass Spectrom , vol.20 , pp. 2243-2251
    • Assayag, N.1    Rivék2    Ader, M.3    Jézéquel, D.4    Agrinier, P.5
  • 9
    • 0001012309 scopus 로고
    • Hydrocarbons in surface sediments from a Guaymas Basin hydrothermal vent site
    • Bazylinski DA, Farrington JW, Jannasch HW. (1988). Hydrocarbons in surface sediments from a Guaymas Basin hydrothermal vent site. Org Geochem 12: 547-558.
    • (1988) Org Geochem , vol.12 , pp. 547-558
    • Bazylinski, D.A.1    Farrington, J.W.2    Jannasch, H.W.3
  • 10
    • 70350273412 scopus 로고    scopus 로고
    • Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
    • Benndorf D, Vogt C, Jehmlic h N, Schmidt Y, Thomas H, Woffendin G et al. (2009). Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments. Biodegradation 20: 737 -750.
    • (2009) Biodegradation , vol.20 , pp. 737-750
    • Benndorf, D.1    Vogt, C.2    Jehmlich, N.3    Schmidt, Y.4    Thomas, H.5    Woffendin, G.6
  • 11
    • 84859913716 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
    • Biddle JF, Cardman Z, Mendlovitz H, Albert DB, Lloyd KG, Boetius A et al. (2011). Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. ISME J 6: 1018-1031.
    • (2011) ISME J , vol.6 , pp. 1018-1031
    • Biddle, J.F.1    Cardman, Z.2    Mendlovitz, H.3    Albert, D.B.4    Lloyd, K.G.5    Boetius, A.6
  • 12
    • 84892187901 scopus 로고    scopus 로고
    • Geomicrobiological linkages between shortchain alkane consumption and sulfate reduction rates in seep sediments
    • Bose A, Rogers DR, Adams MM, Joye SB, Girguis PR. (2013). Geomicrobiological linkages between shortchain alkane consumption and sulfate reduction rates in seep sediments. Front Microbiol 4: 386.
    • (2013) Front Microbiol , vol.4 , pp. 386
    • Bose, A.1    Rogers, D.R.2    Adams, M.M.3    Joye, S.B.4    Girguis, P.R.5
  • 13
    • 78650187987 scopus 로고    scopus 로고
    • Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation
    • Bowles MW, Samarkin VA, Bowles KM, Joye SB. (2011). Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation. Geochim Cosmo chim Acta 75: 500-519.
    • (2011) Geochim Cosmo Chim Acta , vol.75 , pp. 500-519
    • Bowles, M.W.1    Samarkin, V.A.2    Bowles, K.M.3    Joye, S.B.4
  • 15
    • 77957358045 scopus 로고    scopus 로고
    • Diversity of benzyl-and alkylsuccinate synthase genes in hydrocarbon-impacted environme nts and enrichment cultures
    • Callaghan AV, Davidova IA, Savage-Ashlock K, Parisi VA, Gieg LM, Suflita JM et al. (2010). Diversity of benzyl-and alkylsuccinate synthase genes in hydrocarbon-impacted environme nts and enrichment cultures. Environ Sci Technol 44: 7287-7294.
    • (2010) Environ Sci Technol , vol.44 , pp. 7287-7294
    • Callaghan, A.V.1    Davidova, I.A.2    Savage-Ashlock, K.3    Parisi, V.A.4    Gieg, L.M.5    Suflita, J.M.6
  • 16
    • 0021836170 scopus 로고
    • A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria
    • Cord-Ruwisch R. (1985). A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4: 33-36.
    • (1985) J Microbiol Methods , vol.4 , pp. 33-36
    • Cord-Ruwisch, R.1
  • 17
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox J, Mann M. (2008). MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26 : 1367-1372.
    • (2008) Nat Biotechnol , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 19
    • 0013258174 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin
    • Dhillon A, Teske A, Dillon J, Stahl DA, Sogin ML. (2003). Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69: 2765-2772.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2765-2772
    • Dhillon, A.1    Teske, A.2    Dillon, J.3    Stahl, D.A.4    Sogin, M.L.5
  • 20
    • 0024898163 scopus 로고
    • Hydrothermal oil of Guaymas Basin and implications for petroleum formation mechanisms
    • Didyk BM, S imoneit BRT. (1989). Hydrothermal oil of Guaymas Basin and implications for petroleum formation mechanisms. Nature 342: 65-69.
    • (1989) Nature , vol.342 , pp. 65-69
    • Didyk, B.M.1    Simoneit, B.R.T.2
  • 21
    • 79959574494 scopus 로고    scopus 로고
    • Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays
    • Elsaied H, Stokes HW, Kitamura K, Kurusu Y, Kamagata Y, Maruyama A. (2011). Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays. ISME J 5: 1162-1177.
    • (2011) ISME J , vol.5 , pp. 1162-1177
    • Elsaied, H.1    Stokes, H.W.2    Kitamura, K.3    Kurusu, Y.4    Kamagata, Y.5    Maruyama, A.6
  • 26
    • 38049101111 scopus 로고    scopus 로고
    • Genes encoding the candida te enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1
    • Grundmann O, Behrends A, Rabus R, Amann J, Halder T, Heider J et al. (2008). Genes encoding the candida te enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1. Environ Microbiol 10: 376-385.
    • (2008) Environ Microbiol , vol.10 , pp. 376-385
    • Grundmann, O.1    Behrends, A.2    Rabus, R.3    Amann, J.4    Halder, T.5    Heider, J.6
  • 27
    • 84886727312 scopus 로고    scopus 로고
    • Hyd rocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
    • Gutierrez T, Singleton DR, Berry D, Yang T, Aitken MD, Teske A. (2013). Hyd rocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP. ISME J 7: 2091-2104.
    • (2013) ISME J , vol.7 , pp. 2091-2104
    • Gutierrez, T.1    Singleton, D.R.2    Berry, D.3    Yang, T.4    Aitken, M.D.5    Teske, A.6
  • 28
    • 68249105075 scopus 로고    scopus 로고
    • Co-occurrence of denitrification and nitrogen fixation in a meromictic lake
    • Lake Cadagno (Switzerland)
    • Halm H, Musat N, Lam P, Langlois R, Musat F, Peduzzi S et al. ( 2009). Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland). Environ Microbiol 11: 1945-1958.
    • (2009) Environ Microbiol , vol.11 , pp. 1945-1958
    • Halm, H.1    Musat, N.2    Lam, P.3    Langlois, R.4    Musat, F.5    Peduzzi, S.6
  • 29
    • 0032987149 scopus 로고    scopus 로고
    • Anaerobic oxidation of o-xylene, m-xylene, and homologous alkylbenzenes by new types of sulfate-reducing bacteria
    • Harms G, Zengler K, Rabus R, Aeckersberg F, Minz D, Rosselló-Móra R et al. (1999). Anaerobic oxidation of o-xylene, m-xylene, and homologous alkylbenzenes by new types of sulfate-reducing bacteria. Appl Environ Microbiol 65: 999-1004.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 999-1004
    • Harms, G.1    Zengler, K.2    Rabus, R.3    Aeckersberg, F.4    Minz, D.5    Rosselló-Móra, R.6
  • 32
    • 84885043115 scopus 로고    scopus 로고
    • Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP
    • Herbst F-A, Bahr A, Duarte M, Pieper DH, Richnow H-H, Von Bergen M et al. (2013). Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics 13: 2910-2920.
    • (2013) Proteomics , vol.13 , pp. 2910-2920
    • Herbst, F.-A.1    Bahr, A.2    Duarte, M.3    Pieper, D.H.4    Richnow, H.-H.5    Von Bergen, M.6
  • 34
    • 84876861632 scopus 로고    scopus 로고
    • Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps
    • Jaekel U, Musat N, Adam B, Kuypers M, Grundmann O, Musat F. (2012). Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps. ISME J 7: 885-895.
    • (2012) ISME J , vol.7 , pp. 885-895
    • Jaekel, U.1    Musat, N.2    Adam, B.3    Kuypers, M.4    Grundmann, O.5    Musat, F.6
  • 35
    • 53049085850 scopus 로고    scopus 로고
    • Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP
    • Jehmlich N, Schmidt F, Hartwich M, Von Bergen M, Richnow H-H, Vogt C. (2008). Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP). Rapid Commun Mass Spectrom 22: 2889-2897.
    • (2008) Rapid Commun Mass Spectrom , vol.22 , pp. 2889-2897
    • Jehmlich, N.1    Schmidt, F.2    Hartwich, M.3    Von Bergen, M.4    Richnow, H.-H.5    Vogt, C.6
  • 36
    • 2142813859 scopus 로고    scopus 로고
    • The anaerobic oxidation of methane and sulfate reduction in sedimen ts from Gulf of Mexico cold seeps
    • Joye SB, Boetius A, Orcutt BN, Montoya JP, Schulz HN, Erickson MJ et al. (2004). The anaerobic oxidation of methane and sulfate reduction in sedimen ts from Gulf of Mexico cold seeps. Chem Geol 205: 219-238.
    • (2004) Chem Geol , vol.205 , pp. 219-238
    • Joye, S.B.1    Boetius, A.2    Orcutt, B.N.3    Montoya, J.P.4    Schulz, H.N.5    Erickson, M.J.6
  • 37
    • 54949125352 scopus 로고    scopus 로고
    • Trifle: A program for in silico terminal restriction fragment length polymorphism analysis with user-define d sequence sets
    • Junier P, Junier T, Witzel K-P. (2008). TRiFLe: a program for in silico terminal restriction fragment length polymorphism analysis with user-define d sequence sets. Appl Environ Microbiol 74: 6452-6456.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6452-6456
    • Junier, P.1    Junier, T.2    Witzel, K.-P.3
  • 38
    • 33845647288 scopus 로고    scopus 로고
    • Carbon and hydrogen isotope fractionation associated with the aerobic microbial oxidation of methane, etha ne, propane and butane
    • Kinnaman FS, Valentine DL, Tyler SC. (2007). Carbon and hydrogen isotope fractionation associated with the aerobic microbial oxidation of methane, etha ne, propane and butane. Geochim Cosmochim Acta 71: 271-283.
    • (2007) Geochim Cosmochim Acta , vol.71 , pp. 271-283
    • Kinnaman, F.S.1    Valentine, D.L.2    Tyler, S.C.3
  • 39
    • 84867206624 scopus 로고    scopus 로고
    • Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbo n seep sediments
    • Kleindienst S Ramette A Amann R Knittel K. 2012 Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbo n seep sediments. Environ Microbiol 14 2689-2710.
    • (2012) Environ Microbiol , vol.14 , pp. 2689-2710
    • Kleindienst, S.1    Ramette, A.2    Amann, R.3    Knittel, K.4
  • 40
    • 35349017819 scopus 로고    scopus 로고
    • Anaerobic oxidation of short-chain hydrocarbons by marin e sulphatereducing bacteria
    • Kniemeyer O, Musat F, Sievert SM, Knittel K, Wilkes H, Blumenberg M et al. (2007). Anaerobic oxidation of short-chain hydrocarbons by marin e sulphatereducing bacteria. Nature 449: 898-910.
    • (2007) Nature , vol.449 , pp. 898-910
    • Kniemeyer, O.1    Musat, F.2    Sievert, S.M.3    Knittel, K.4    Wilkes, H.5    Blumenberg, M.6
  • 41
    • 70349559191 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane: Progress with an unknown process
    • Knittel K, Boetius A. (2009). Anaerobic oxidation of methane: progress with an unknown process. Annu Rev Microbiol 63: 311-334.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 311-334
    • Knittel, K.1    Boetius, A.2
  • 42
    • 0141447287 scopus 로고    scopus 로고
    • Activity, distribution, and diversity of sulfate reducers and other bacteria in sediments above gas hydrate (Cascadia margin, Oregon
    • Knittel K, Boetius A, Lemke A, Eilers H, Lochte K, Pfannkuche O et al. (2003). Activity, distribution, and diversity of sulfate reducers and other bacteria in sediments above gas hydrate (Cascadia margin, Oregon). Ge omicrobiol J 20: 269-294.
    • (2003) Ge Omicrobiol J , vol.20 , pp. 269-294
    • Knittel, K.1    Boetius, A.2    Lemke, A.3    Eilers, H.4    Lochte, K.5    Pfannkuche, O.6
  • 43
    • 83055184882 scopus 로고    scopus 로고
    • Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach san ds impacted by the Deepwater Horizon oil spill
    • Kostka JE, Prakash O, Overholt WA, Green SJ, Freyer G, Canion A et al. (2011). Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach san ds impacted by the Deepwater Horizon oil spill. Appl Environ Microbiol 77: 7962-7974.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7962-7974
    • Kostka, J.E.1    Prakash, O.2    Overholt, W.A.3    Green, S.J.4    Freyer, G.5    Canion, A.6
  • 44
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 45
    • 2442473665 scopus 로고    scopus 로고
    • A novel arsenate respiring isolate that can utilize aromatic substrates
    • Liu A, Garcia-Dominguez E, Rhine ED, Young LY. (2004). A novel arsenate respiring isolate that can utilize aromatic substrates. FEMS Microbiol Ecol 48: 323-332.
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 323-332
    • Liu, A.1    Garcia-Dominguez, E.2    Rhine, E.D.3    Young, L.Y.4
  • 46
    • 77649303058 scopus 로고    scopus 로고
    • Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep
    • Lloyd KG, Albert DB, Biddle JF, Chanton JP, Pizarro O, Teske A. (2010). Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS On e 5: e8738.
    • (2010) PLoS One , vol.5 , pp. e8738
    • Lloyd, K.G.1    Albert, D.B.2    Biddle, J.F.3    Chanton, J.P.4    Pizarro, O.5    Teske, A.6
  • 47
    • 34249660046 scopus 로고    scopus 로고
    • Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano
    • Barents Sea
    • Lösekann T, Knittel K, Nadalig T, Fuchs B, Niemann H, Boetius A et al. (2007). Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano , Barents Sea. Appl Environ Microbiol 73: 3348-3362.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3348-3362
    • Lösekann, T.1    Knittel, K.2    Nadalig, T.3    Fuchs, B.4    Niemann, H.5    Boetius, A.6
  • 49
    • 0842266326 scopus 로고    scopus 로고
    • Enhanced sensitivity of DNA-and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradien ts
    • Lueders T, Manefield M, Friedrich MW. (2004). Enhanced sensitivity of DNA-and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradien ts. Environ Microbiol 6: 73-78.
    • (2004) Environ Microbiol , vol.6 , pp. 73-78
    • Lueders, T.1    Manefield, M.2    Friedrich, M.W.3
  • 50
    • 0842266321 scopus 로고    scopus 로고
    • Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi an d protozoa in oxic rice field soil
    • Lueders T, Wagner B, Claus P, Friedrich MW. (2004). Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi an d protozoa in oxic rice field soil. Environ Microbiol 6: 60-72.
    • (2004) Environ Microbiol , vol.6 , pp. 60-72
    • Lueders, T.1    Wagner, B.2    Claus, P.3    Friedrich, M.W.4
  • 51
    • 77957003332 scopus 로고    scopus 로고
    • Stable isotope probing of hydrocarbondegraders
    • In Timmis KN (ed) Springer: Berlin, Heidelberg, Germany
    • Lueders T. (2010). Stable isotope probing of hydrocarbondegraders. In: Timmis KN (ed) Handbook of Hydrocarbon and Lipid Microbiology vol. 5, Springer: Berlin, Heidelberg, Germany, pp 4011-4026.
    • (2010) Handbook of Hydrocarbon and Lipid Microbiology , vol.5 , pp. 4011-4026
    • Lueders, T.1
  • 52
    • 0031973278 scopus 로고    scopus 로고
    • Abundance and spatial organization of gram-negative sulfate-reducing bacteria in activated sludge inv estigated by in situ probing with specific 16S rRNA targeted oligonucleotides
    • Manz W, Eisenbrecher M, Neu TR, Szewzyk U. (1998). Abundance and spatial organization of gram-negative sulfate-reducing bacteria in activated sludge inv estigated by in situ probing with specific 16S rRNA targeted oligonucleotides. FEMS Microbiol Ecol 25: 43-61.
    • (1998) FEMS Microbiol Ecol , vol.25 , pp. 43-61
    • Manz, W.1    Eisenbrecher, M.2    Neu, T.R.3    Szewzyk, U.4
  • 53
    • 66149189332 scopus 로고    scopus 로고
    • Differential aerobic and anaerobic oxidation of hydrocarbon gases discharged at mud volcanoes in the Nile deep-sea fan
    • Mastalerz V, De Lange GJ, Dählmann A. (2009). Differential aerobic and anaerobic oxidation of hydrocarbon gases discharged at mud volcanoes in the Nile deep-sea fan. Geochim Cosmochim Acta 73: 3849-3863.
    • (2009) Geochim Cosmochim Acta , vol.73 , pp. 3849-3863
    • Mastalerz, V.1    De Lange, G.J.2    Dählmann, A.3
  • 54
    • 55049085271 scopus 로고    scopus 로고
    • A simple and safe method for the simultan eous isolation of microbial rna and dna from problematic populations
    • McIlroy S, Porter K, Seviour RJ, Tillett D. (2008). A simple and safe method for the simultan eous isolation of microbial RNA and DNA from problematic populations. Appl Environ Microbiol 74: 6806-6807.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6806-6807
    • McIlroy, S.1    Porter, K.2    Seviour, R.J.3    Tillett, D.4
  • 56
    • 3142628113 scopus 로고    scopus 로고
    • Degradation of o-xylene and m-xylene by a novel sul fate-reducer belonging to the genus desulfotomaculum
    • Morasch B, Schink B, Tebbe CC, Meckenstock RU. (2004). Degradation of o-xylene and m-xylene by a novel sul fate-reducer belonging to the genus Desulfotomaculum. Arch Microbiol 181: 407-417.
    • (2004) Arch Microbiol , vol.181 , pp. 407-417
    • Morasch, B.1    Schink, B.2    Tebbe, C.C.3    Meckenstock, R.U.4
  • 57
    • 38149026187 scopus 로고    scopus 로고
    • Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridiza tion of the dominant phylotype
    • Musat F, Widdel F. (2008). Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridiza tion of the dominant phylotype. Environ Microbiol 10: 10-19.
    • (2008) Environ Microbiol , vol.10 , pp. 10-19
    • Musat, F.1    Widdel, F.2
  • 58
    • 84871165198 scopus 로고    scopus 로고
    • Microbial diversity in deep-sea methane seep sediments presen ted by SSU rRNA gene tag sequencing
    • Nunoura T, Takaki Y, Kazama H, Hirai M, Ashi J, Imachi H et al. (2012). Microbial diversity in deep-sea methane seep sediments presen ted by SSU rRNA gene tag sequencing. Microbes Environment 27: 382-390.
    • (2012) Microbes Environment , vol.27 , pp. 382-390
    • Nunoura, T.1    Takaki, Y.2    Kazama, H.3    Hirai, M.4    Ashi, J.5    Imachi, H.6
  • 59
    • 44249116888 scopus 로고    scopus 로고
    • Biogeochemistry and community composit ion of iron-and sulfurprecipitating microbial mats at the chefren mud volcano (nile deep sea fan, eastern mediterranean
    • Omoregie EO, Mastalerz V, De Lange G, Straub KL, Kappler A, Røy H et al. (2008). Biogeochemistry and community composit ion of iron-and sulfurprecipitating microbial mats at the Chefren mud volcano (Nile Deep Sea fan, Eastern Mediterranean). Appl Environ Microbiol 74: 3198-3215.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3198-3215
    • Omoregie, E.O.1    Mastalerz, V.2    De Lange, G.3    Straub, K.L.4    Kappler, A.5    Røy, H.6
  • 60
    • 67349167076 scopus 로고    scopus 로고
    • Microbial methane oxidation and sulfate reduction at cold seeps of the deep eastern mediterranean sea
    • Omoregie EO, Niemann H, Mastal erz V, De Lange GJ, Stadnitskaia A, Mascle J et al. (2009). Microbial methane oxidation and sulfate reduction at cold seeps of the deep Eastern Mediterranean Sea. Mar Geol 261: 114-127.
    • (2009) Mar Geol , vol.261 , pp. 114-127
    • Omoregie, E.O.1    Niemann, H.2    Mastalerz, V.3    De Lange, G.J.4    Stadnitskaia, A.5    Mascle, J.6
  • 61
    • 78349309404 scopus 로고    scopus 로고
    • Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments
    • Orcutt BN Joye SB Kleindienst S Knittel K Ramette A Reitz A et al. (2010). Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments. Deep-Sea Res Part II 5 7 2008-2021.
    • (2010) Deep-Sea Res Part II , vol.57 , pp. 2008-2021
    • Orcutt, B.N.1    Joye, S.B.2    Kleindienst, S.3    Knittel, K.4    Ramette, A.5    Reitz, A.6
  • 62
    • 0035317030 scopus 로고    scopus 로고
    • Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments
    • Orphan VJ, Hinrichs K-U, Ussler W, Paull CK, Taylor LT, Sylva SP et al. (2001). Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Appl Environ Microbiol 67: 1922-1934.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1922-1934
    • Orphan, V.J.1    Hinrichs, K.-U.2    Ussler, W.3    Paull, C.K.4    Taylor, L.T.5    Sylva, S.P.6
  • 63
    • 80052883086 scopus 로고    scopus 로고
    • Diversity and spatial distribution of prokaryotic communities along a sediment vertical profile of a deep-sea mud volcano
    • Pachiadaki M, Kallionaki A, Dählmann A, De Lange G, Kormas K. (2011). Diversity and spatial distribution of prokaryotic communities along a sediment vertical profile of a deep-sea mud volcano. Microb Ecol 62: 655-668.
    • (2011) Microb Ecol , vol.62 , pp. 655-668
    • Pachiadaki, M.1    Kallionaki, A.2    Dählmann, A.3    De Lange, G.4    Kormas, K.5
  • 64
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrome try data
    • Perkins DN, Pappin DJC, Creasy DM, Cottrell JS. (1999). Probability-based protein identification by searching sequence databases using mass spectrome try data. Electrophoresis 20: 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 65
    • 80052609854 scopus 로고    scopus 로고
    • Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP
    • Pilloni G, Von Netzer F, Engel M, Lueders T. (2011). Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP. FEMS Microbiol Ecol 78: 165-175.
    • (2011) FEMS Microbiol Ecol , vol.78 , pp. 165-175
    • Pilloni, G.1    Von Netzer, F.2    Engel, M.3    Lueders, T.4
  • 66
    • 84863739532 scopus 로고    scopus 로고
    • Testing the limits of 454 pyrotag sequencing: Reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes
    • Pilloni G, Granitsiotis MS, Engel M, Lueders T. (2012). Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PLoS One 7: e40467.
    • (2012) PLoS One , vol.7 , pp. e40467
    • Pilloni, G.1    Granitsiotis, M.S.2    Engel, M.3    Lueders, T.4
  • 67
    • 84866729949 scopus 로고    scopus 로고
    • Prokaryotic hydrocarbon degraders
    • In Timmis KN (ed) Springer- Verlag: Berlin Heidelberg, Germany
    • Prince RC, Gramain A, McGenity TJ. (2010). Prokaryotic hydrocarbon degraders. In: Timmis KN (ed) Handbook of Hydrocarbon and Lipid Microbiology. Springer-Verlag: Berlin Heidelberg, Germany, pp 1669-1692.
    • (2010) Handbook of Hydrocarbon and Lipid Microbiology , pp. 1669-1692
    • Prince, R.C.1    Gramain, A.2    McGenity, T.J.3
  • 68
    • 84873739311 scopus 로고    scopus 로고
    • The silva ribosomal rna gene database project: Improved d ata processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P et al. (2013). The SILVA ribosomal RNA gene database project: improved d ata processing and web-based tools. Nucleic Acids Res 41: D590-D596.
    • (2013) Nucleic Acids Res , vol.41 , pp. 590-596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 69
    • 79952736795 scopus 로고    scopus 로고
    • Anaerobic propane oxidation in marine hydrocarbon seep sediments
    • Quistad SD, Valentine DL. (2011). Anaerobic propane oxidation in marine hydrocarbon seep sediments. Geochim Cosmochim Acta 75: 2159-2169.
    • (2011) Geochim Cosmochim Acta , vol.75 , pp. 2159-2169
    • Quistad, S.D.1    Valentine, D.L.2
  • 70
    • 0035110830 scopus 로고    scopus 로고
    • Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: Evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism
    • Rabus R, Wilkes H, Behrends A, Armstroff A, Fische r T, Pierik AJ et al. (2001). Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism. J Bacteriol 1 83: 1707-1715.
    • (2001) J Bacteriol , vol.183 , pp. 1707-1715
    • Rabus, R.1    Wilkes, H.2    Behrends, A.3    Armstroff, A.4    Fischer, T.5    Pierik, A.J.6
  • 71
    • 34248204828 scopus 로고    scopus 로고
    • Dissimilatory sulfate-and sulfur-reducing prokaryotes
    • In Dworkin M, Falkow S, Rosenberg E (eds) Springer: Berlin, Germany
    • Rabus R, Hansen TA, Widdel F. (2006). Dissimilatory sulfate-and sulfur-reducing prokaryotes. In: Dworkin M, Falkow S, Rosenberg E (eds) The Prokaryotes. A Handbook on the Biology of Bacteria. Springer: Berlin, Germany, pp 659-768.
    • (2006) The Prokaryotes. A Handbook on the Biology of Bacteria. , pp. 659-768
    • Rabus, R.1    Hansen, T.A.2    Widdel, F.3
  • 72
    • 78049248905 scopus 로고    scopus 로고
    • Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing
    • Redmond MC, Valentine DL, Sessions AL. (2010). Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing. Appl Environ Microbiol 76: 6412-6422.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6412-6422
    • Redmond, M.C.1    Valentine, D.L.2    Sessions, A.L.3
  • 73
    • 84870863360 scopus 로고    scopus 로고
    • Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill
    • Redmond MC, Valentine DL. (2012). Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill. Proc Natl Acad Sci USA 109: 20292-20297.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 20292-20297
    • Redmond, M.C.1    Valentine, D.L.2
  • 74
    • 33847720244 scopus 로고    scopus 로고
    • Oceanic methane biogeochemistry
    • Reeburgh WS. (2007). Oceanic methane biogeochemistry. Chem Rev 107: 486-513.
    • (2007) Chem Rev , vol.107 , pp. 486-513
    • Reeburgh, W.S.1
  • 76
    • 84860125558 scopus 로고    scopus 로고
    • Visualization of candidate division OP3 cocci in limonene-degrading methanogenic cultures
    • Rotar u A-E, Schauer R, Probian C, Mu-mann M, Harder J. (2012). Visualization of candidate division OP3 cocci in limonene-degrading methanogenic cultures. J Microbiol Biotechnol 22: 457-461.
    • (2012) J Microbiol Biotechnol , vol.22 , pp. 457-461
    • Rotaru, A.-E.1    Schauer, R.2    Probian, C.3    Mu-Mann, M.4    Harder, J.5
  • 78
    • 84895828494 scopus 로고    scopus 로고
    • Microbial communities of deep-sea methane seeps at Hikurangi continental margin
    • New Zealand
    • Ruff SE, Arnds J, Knittel K, Amann R, Wegener G, Ramette A et al. (2013). Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand). PLoS One 8: e72627.
    • (2013) PLoS One , vol.8 , pp. e72627
    • Ruff, S.E.1    Arnds, J.2    Knittel, K.3    Amann, R.4    Wegener, G.5    Ramette, A.6
  • 79
    • 77951947989 scopus 로고    scopus 로고
    • Biodegradation of low-molecularweight alkanes under mesophilic, sulfate-reducing conditions: Metabolic intermediates and community pa tterns
    • Savage KN, Krumholz LR, Gieg LM, Parisi VA, Suflita JM, Allen J et al. (2010). Biodegradation of low-molecularweight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community pa tterns. FEMS Microbiol Ecol 72: 485-495.
    • (2010) FEMS Microbiol Ecol , vol.72 , pp. 485-495
    • Savage, K.N.1    Krumholz, L.R.2    Gieg, L.M.3    Parisi, V.A.4    Suflita, J.M.5    Allen, J.6
  • 80
    • 0022472585 scopus 로고
    • Acetate oxidation to CO2 in anaerobic bacteria via a novel pathway not involving reactions of t he citric acid cycle
    • Schauder R, Eikmanns B, Thauer RK, Widdel F, Fuchs G. (1986). Acetate oxidation to CO2 in anaerobic bacteria via a novel pathway not involving reactions of t he citric acid cycle. Arch Microbiol 145: 162-172.
    • (1986) Arch Microbiol , vol.145 , pp. 162-172
    • Schauder, R.1    Eikmanns, B.2    Thauer, R.K.3    Widdel, F.4    Fuchs, G.5
  • 81
    • 18744372991 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe val idation and screening of clone libraries
    • Schramm A, Fuchs BM, Nielsen JL, Tonolla M, Stahl DA. (2002). Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe val idation and screening of clone libraries. Environ Microbiol 4: 713-720.
    • (2002) Environ Microbiol , vol.4 , pp. 713-720
    • Schramm, A.1    Fuchs, B.M.2    Nielsen, J.L.3    Tonolla, M.4    Stahl, D.A.5
  • 82
    • 77955242360 scopus 로고    scopus 로고
    • Identification of the dominant sulfate-reducing bacterial partne r of anaerobic methanotrophs of the ANME-2 clade
    • Schreiber L Holler T Knittel K Meyerdierks A Amann R. 2010 Identification of the dominant sulfate-reducing bacterial partne r of anaerobic methanotrophs of the ANME-2 clade.Environ Microbiol 12 2327-2340.
    • (2010) Environ Microbiol , vol.12 , pp. 2327-2340
    • Schreiber, L.1    Holler, T.2    Knittel, K.3    Meyerdierks, A.4    Amann, R.5
  • 83
    • 33644778038 scopus 로고    scopus 로고
    • Utilisation of C2-C4 gaseous hydrocarbons and isoprene by microorganisms
    • Shennan JL. (2006). Utilisation of C2-C4 gaseous hydrocarbons and isoprene by microorganisms. J Chem Technol Biotechnol 81: 237-256.
    • (2006) J Chem Technol Biotechnol , vol.81 , pp. 237-256
    • Shennan, J.L.1
  • 84
    • 0037485206 scopus 로고    scopus 로고
    • Initial reactions in anaerobic alkane degradation by a sulfate reducer, strain AK-01
    • So CM, Young LY. (1999). Initial reactions in anaerobic alkane degradation by a sulfate reducer, strain AK-01. Appl Environ Microbiol 65: 5532-5540.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5532-5540
    • So, C.M.1    Young, L.Y.2
  • 86
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities
    • Teske A, Hinrichs K-U, Edgcomb V, De Vera Gomez A, Kysela D, Sylva SP et al. (2002). Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994-2007.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.-U.2    Edgcomb, V.3    De Vera Gomez, A.4    Kysela, D.5    Sylva, S.P.6
  • 87
    • 84871851433 scopus 로고    scopus 로고
    • Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems
    • vo n Netzer F, Pilloni G, Kleindienst S, Krüger M, Knittel K, Gründger F et al. (2013). Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems. Appl Environ Microbiol 79: 543-552.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 543-552
    • Von Netzer, F.1    Pilloni, G.2    Kleindienst, S.3    Krüger, M.4    Knittel, K.5    Gründger, F.6
  • 88
    • 0001614970 scopus 로고
    • Gram-negative mesophilic sulfate-reducing bacteria
    • In Balows A, Truper HG, Dworkin M, Harder W, Schleifer KH (eds) 2nd edn. Springer- Verlag: New York, NY, USA
    • Widdel F, Bak F. (1992). Gram-negative mesophilic sulfate-reducing bacteria. In: Balows A, Truper HG, Dworkin M, Harder W, Schleifer KH (eds) The Prokaryotes, 2nd edn. Springer-Verlag: New York, NY, USA, pp 3352-3378.
    • (1992) The Prokaryotes , pp. 3352-3378
    • Widdel, F.1    Bak, F.2
  • 89
    • 70749107427 scopus 로고    scopus 로고
    • Anaerobic hydrocarbon-degrading microorganisms: An overview
    • in Timmis KN, McGenity T, Van Der Meer JR, De Lorenzo V (eds) Springer: Berlin, Heidelberg, Germany
    • Widdel F, Knittel K, Galushko A. (2010). Anaerobic hydrocarbon-degrading microorganisms: an overview. in: Timmis KN, McGenity T, Van Der Meer JR, De Lorenzo V (eds) Handbook of Hydrocarbon and Lipid Microbiology. Springer: Berlin, Heidelberg, Germany, pp 1997-2021.
    • (2010) Handbook of Hydrocarbon and Lipid Microbiology. , pp. 1997-2021
    • Widdel, F.1    Knittel, K.2    Galushko, A.3
  • 90
    • 0036189978 scopus 로고    scopus 로고
    • Anaerobic degradation of n-hexane in a denitrifying bacterium: Further degradation of the initial intermediate (1-methylpentyl)succinate via C-skeleton rearrangement
    • Wilkes H, Rabus R, Fischer T, Armstroff A, Behrends A, Widdel F. (2002). Anaerobic degradation of n-hexane in a denitrifying bacterium: further degradation of the initial intermediate (1-methylpentyl)succinate via C-skeleton rearrangement. Arch Microb iol 177: 235-243.
    • (2002) Arch Microb Iol , vol.177 , pp. 235-243
    • Wilkes, H.1    Rabus, R.2    Fischer, T.3    Armstroff, A.4    Behrends, A.5    Widdel, F.6
  • 91
    • 77957008912 scopus 로고    scopus 로고
    • DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment
    • Winderl C, Penning H, Netzer FV, Meckenstock RU, Lueders T. (2010). DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment. ISME J 4: 1314-1325.
    • (2010) ISME J , vol.4 , pp. 1314-1325
    • Winderl, C.1    Penning, H.2    Netzer, F.V.3    Meckenstock, R.U.4    Lueders, T.5
  • 93
    • 77950626932 scopus 로고    scopus 로고
    • Molecular biologic techniques applied to the microbial prospecting of oil and gas in the Ban 876 gas and oil fi eld in China
    • Zhang F, She Y, Zheng Y, Zhou Z, Kong S, Hou D. (2010). Molecular biologic techniques applied to the microbial prospecting of oil and gas in the Ban 876 gas and oil fi eld in China. Appl Microbiol Biotechnol 86: 1183-1194.
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 1183-1194
    • Zhang, F.1    She, Y.2    Zheng, Y.3    Zhou, Z.4    Kong, S.5    Hou, D.6
  • 94
    • 79959254908 scopus 로고    scopus 로고
    • Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor
    • Zhang Y, Maignien L, Zhao X, Wang F, Boon N. (2011). Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor. BMC Microbiol 11: 137.
    • (2011) BMC Microbiol , vol.11 , pp. 137
    • Zhang, Y.1    Maignien, L.2    Zhao, X.3    Wang, F.4    Boon, N.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.