-
1
-
-
0002096419
-
Diversity, ecology and taxonomy of the cyanobacteria
-
Mann NH, Carr NG (ed), Photosynthetic prokaryotes. Plenum Press, New York, NY
-
Whitton BA. 1992. Diversity, ecology and taxonomy of the cyanobacteria, p 1-51. In Mann NH, Carr NG (ed), Photosynthetic prokaryotes. Plenum Press, New York, NY.
-
(1992)
, pp. 1-51
-
-
Whitton, B.A.1
-
2
-
-
0002315733
-
Physiology of the photosynthetic prokaryotes
-
Mann NH, Carr NG (ed), Photosynthetic prokaryotes. Plenum Press, New York, NY
-
Ormerod JG. 1992. Physiology of the photosynthetic prokaryotes, p 93-120. In Mann NH, Carr NG (ed), Photosynthetic prokaryotes. Plenum Press, New York, NY.
-
(1992)
, pp. 93-120
-
-
Ormerod, J.G.1
-
3
-
-
0029790052
-
Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours
-
Mori T, Binder B, Johnson CH. 1996. Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours. Proc. Natl. Acad. Sci. U. S. A. 93:10183-10188. http://dx.doi.org/10.1073 /pnas.93.19.10183.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 10183-10188
-
-
Mori, T.1
Binder, B.2
Johnson, C.H.3
-
4
-
-
0347537349
-
Photosynthesis and respiration in cyanobacteria
-
Nature Publishing Group, London, United Kingdom
-
Vermaas WF. 2001. Photosynthesis and respiration in cyanobacteria, p 245-251. In Encyclopedia of life sciences. Nature Publishing Group, London, United Kingdom.
-
(2001)
Encyclopedia of life sciences
, pp. 245-251
-
-
Vermaas, W.F.1
-
5
-
-
0016331523
-
Photosynthesis and nitrogenase activity in the blue-green alga Gloeocapsa
-
Gallon JR, LaRue TA, Kurz WG. 1974. Photosynthesis and nitrogenase activity in the blue-green alga Gloeocapsa. Can. J. Microbiol. 20:1633-1637. http://dx.doi.org/10.1139/m74-254.
-
(1974)
Can. J. Microbiol.
, vol.20
, pp. 1633-1637
-
-
Gallon, J.R.1
LaRue, T.A.2
Kurz, W.G.3
-
6
-
-
0004064137
-
-
Cambridge University Press, Cambridge, United Kingdom
-
Postgate J. 1998. Nitrogen fixation. Cambridge University Press, Cambridge, United Kingdom.
-
(1998)
Nitrogen fixation
-
-
Postgate, J.1
-
7
-
-
0019432223
-
Acetylene reduction (nitrogen fixation) by cyanobacteria grown under alternating light-dark cycles
-
Millineaux PM, Gallon JR, Chaplin AE. 1981. Acetylene reduction (nitrogen fixation) by cyanobacteria grown under alternating light-dark cycles. FEMS Microbiol. Lett. 10:245-247. http://dx.doi.org/10.1111/j.1574 -6968.1981.tb06249.x.
-
(1981)
FEMS Microbiol. Lett.
, vol.10
, pp. 245-247
-
-
Millineaux, P.M.1
Gallon, J.R.2
Chaplin, A.E.3
-
8
-
-
33747591416
-
Metabolic cycles as an underlying basis of biological oscillations
-
Tu BP, McKnight SL. 2006. Metabolic cycles as an underlying basis of biological oscillations. Nat. Rev. Mol. Cell Biol. 7:696-701. http://dx.doi .org/10.1038/nrm1980.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 696-701
-
-
Tu, B.P.1
McKnight, S.L.2
-
9
-
-
1842456940
-
Cyanobacterial circadian clocks-timing is everything
-
Golden SS, Canales SR. 2003. Cyanobacterial circadian clocks-timing is everything. Nat. Rev. Microbiol. 1:191-199. http://dx.doi.org/10.1038 /nrmicro774.
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 191-199
-
-
Golden, S.S.1
Canales, S.R.2
-
10
-
-
0029042379
-
Circadian orchestration of gene expression in cyanobacteria
-
Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T. 1995. Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 9:1469-1478. http://dx.doi.org/10.1101/gad.9.12 .1469.
-
(1995)
Genes Dev
, vol.9
, pp. 1469-1478
-
-
Liu, Y.1
Tsinoremas, N.F.2
Johnson, C.H.3
Lebedeva, N.V.4
Golden, S.S.5
Ishiura, M.6
Kondo, T.7
-
11
-
-
0003061304
-
Circadian rhythm in amino acid uptake by Synechococcus RF-1
-
Chen TH, Chen TL, Hung LM, Huang TC. 1991. Circadian rhythm in amino acid uptake by Synechococcus RF-1. Plant Physiol. 97:55-59. http: //dx.doi.org/10.1104/pp.97.1.55.
-
(1991)
Plant Physiol
, vol.97
, pp. 55-59
-
-
Chen, T.H.1
Chen, T.L.2
Hung, L.M.3
Huang, T.C.4
-
12
-
-
0024922209
-
A circadian-rhythm in cell-division in a prokaryote, the cyanobacterium Synechococcus WH 7803
-
Sweeney BM, Borgese MB. 1989. A circadian-rhythm in cell-division in a prokaryote, the cyanobacterium Synechococcus WH 7803. J. Phycol. 25: 183-186. http://dx.doi.org/10.1111/j.0022-3646.1989.00183.x.
-
(1989)
J. Phycol.
, vol.25
, pp. 183-186
-
-
Sweeney, B.M.1
Borgese, M.B.2
-
13
-
-
33744779947
-
Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus
-
Smith RM, Williams SB. 2006. Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc. Natl. Acad. Sci. U. S. A. 103:8564-8569. http://dx .doi.org/10.1073/pnas.0508696103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 8564-8569
-
-
Smith, R.M.1
Williams, S.B.2
-
14
-
-
0035783051
-
Circadian programming in cyanobacteria
-
Mori T, Johnson CH. 2001. Circadian programming in cyanobacteria. Semin. Cell Dev. Biol. 12:271-278. http://dx.doi.org/10.1006/scdb.2001 .0254.
-
(2001)
Semin. Cell Dev. Biol.
, vol.12
, pp. 271-278
-
-
Mori, T.1
Johnson, C.H.2
-
15
-
-
76049087668
-
Oscillations in supercoiling drive circadian gene expression in cyanobacteria
-
Vijayan V, Zuzow R, O'Shea EK. 2009. Oscillations in supercoiling drive circadian gene expression in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 106:22564-22568. http://dx.doi.org/10.1073/pnas.0912673106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 22564-22568
-
-
Vijayan, V.1
Zuzow, R.2
O'Shea, E.K.3
-
16
-
-
36749033238
-
Circadian rhythms of superhelical status of DNA in cyanobacteria
-
Woelfle MA, Xu Y, Qin X, Johnson CH. 2007. Circadian rhythms of superhelical status of DNA in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 104:18819-18824. http://dx.doi.org/10.1073/pnas.0706069104.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 18819-18824
-
-
Woelfle, M.A.1
Xu, Y.2
Qin, X.3
Johnson, C.H.4
-
17
-
-
77954631609
-
Diel cycling of DNA staining and nifH gene regulation in the unicellular cyanobacterium Crocosphaera watsonii strainWH8501 (Cyanophyta)
-
Pennebaker K, Mackey KR, Smith RM, Williams SB, Zehr JP. 2010. Diel cycling of DNA staining and nifH gene regulation in the unicellular cyanobacterium Crocosphaera watsonii strainWH8501 (Cyanophyta). Environ. Microbiol. 12:1001-1010. http://dx.doi.org/10.1111/j.1462-2920 .2010.02144.x.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1001-1010
-
-
Pennebaker, K.1
Mackey, K.R.2
Smith, R.M.3
Williams, S.B.4
Zehr, J.P.5
-
18
-
-
1642555774
-
Global gene repression by KaiC as a master process of prokaryotic circadian system
-
Nakahira Y, Katayama M, Miyashita H, Kutsuna S, Iwasaki H, Oyama T, Kondo T. 2004. Global gene repression by KaiC as a master process of prokaryotic circadian system. Proc. Natl. Acad. Sci. U. S. A. 101:881-885. http://dx.doi.org/10.1073/pnas.0307411100.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 881-885
-
-
Nakahira, Y.1
Katayama, M.2
Miyashita, H.3
Kutsuna, S.4
Iwasaki, H.5
Oyama, T.6
Kondo, T.7
-
19
-
-
69549101750
-
Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus
-
Ito H, Mutsuda M, Murayama Y, Tomita J, Hosokawa N, Terauchi K, Sugita C, Sugita M, Kondo T, Iwasaki H. 2009. Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus. Proc. Natl. Acad. Sci. U. S. A. 106:14168-14173. http://dx.doi.org/10.1073/pnas.0902587106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 14168-14173
-
-
Ito, H.1
Mutsuda, M.2
Murayama, Y.3
Tomita, J.4
Hosokawa, N.5
Terauchi, K.6
Sugita, C.7
Sugita, M.8
Kondo, T.9
Iwasaki, H.10
-
20
-
-
84920092430
-
Circadian clocks of Synechocystis sp. strain PCC 6803
-
Ditty JL Mackey SR, Johnson CH (ed), Bacterial circadian programs. Springer, Berlin, Germany
-
Aoki S, Onai K. 2009. Circadian clocks of Synechocystis sp. strain PCC 6803, Thermosynechococcus elongatus, Prochlorococcus spp., Trichodesmium spp. and other species, p 259-282. In Ditty JL, Mackey SR, Johnson CH (ed), Bacterial circadian programs. Springer, Berlin, Germany.
-
(2009)
Thermosynechococcus elongatus, Prochlorococcus spp., Trichodesmium spp. and other species
, pp. 259-282
-
-
Aoki, S.1
Onai, K.2
-
21
-
-
33744497575
-
Examination of diel changes in global transcript accumulation in Synechocystis (cyanobacteria)
-
Labiosa RG, Arrigo KR, Tu CJ, Bhaya D, Bay S, Grossman AR, Shrager J. 2006. Examination of diel changes in global transcript accumulation in Synechocystis (cyanobacteria). J. Phycol. 42:622-636. http://dx.doi.org/10 .1111/j.1529-8817.2006.00217.x.
-
(2006)
J. Phycol.
, vol.42
, pp. 622-636
-
-
Labiosa, R.G.1
Arrigo, K.R.2
Tu, C.J.3
Bhaya, D.4
Bay, S.5
Grossman, A.R.6
Shrager, J.7
-
22
-
-
14644422162
-
Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803
-
Kucho K, Okamoto K, Tsuchiya Y, Nomura S, Nango M, Kanehisa M, Ishiura M. 2005. Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J. Bacteriol. 187:2190-2199. http://dx.doi.org/10.1128/JB.187.6.2190-2199.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2190-2199
-
-
Kucho, K.1
Okamoto, K.2
Tsuchiya, Y.3
Nomura, S.4
Nango, M.5
Kanehisa, M.6
Ishiura, M.7
-
23
-
-
0029563688
-
Circadian expression of the dnaK gene in the cyanobacterium Synechocystis sp. strain PCC 6803
-
Aoki S, Kondo T, Ishiura M. 1995. Circadian expression of the dnaK gene in the cyanobacterium Synechocystis sp. strain PCC 6803. J. Bacteriol. 177: 5606-5611.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5606-5611
-
-
Aoki, S.1
Kondo, T.2
Ishiura, M.3
-
24
-
-
0030885155
-
Circadian rhythm of the cyanobacterium Synechocystis sp. strain PCC 6803 in the dark
-
Aoki S, Kondo T, Wada H, Ishiura M. 1997. Circadian rhythm of the cyanobacterium Synechocystis sp. strain PCC 6803 in the dark. J. Bacteriol. 179:5751-5755.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5751-5755
-
-
Aoki, S.1
Kondo, T.2
Wada, H.3
Ishiura, M.4
-
25
-
-
84863924309
-
Bacterial small RNA regulators: versatile roles and rapidly evolving variations
-
Gottesman S, Storz G. 2011. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb. Perspect. Biol. 3:a003798. http://dx.doi.org/10.1101/cshperspect.a003798.
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
-
-
Gottesman, S.1
Storz, G.2
-
26
-
-
80053062656
-
Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersiniaspecific small, noncoding RNAs required for virulence
-
Koo JT, Alleyne TM, Schiano CA, Jafari N, Lathem WW. 2011. Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersiniaspecific small, noncoding RNAs required for virulence. Proc. Natl. Acad. Sci. U. S. A. 108:E709-E717. http://dx.doi.org/10.1073/pnas.1101655108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
-
-
Koo, J.T.1
Alleyne, T.M.2
Schiano, C.A.3
Jafari, N.4
Lathem, W.W.5
-
27
-
-
79958047291
-
cis- Antisense RNA, another level of gene regulation in bacteria
-
Georg J, Hess WR. 2011. cis-Antisense RNA, another level of gene regulation in bacteria. Microbiol. Mol. Biol. Rev. 75:286-300. http://dx.doi .org/10.1128/MMBR.00032-10.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
28
-
-
84856777234
-
Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis
-
Madhugiri R, Pessi G, Voss B, Hahn J, Sharma CM, Reinhardt R, Vogel J, Hess WR, Fischer HM, Evguenieva-Hackenberg E. 2012. Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis. RNA Biol. 9:47-58. http://dx.doi.org/10.4161/rna.9.1.18008.
-
(2012)
RNA Biol
, vol.9
, pp. 47-58
-
-
Madhugiri, R.1
Pessi, G.2
Voss, B.3
Hahn, J.4
Sharma, C.M.5
Reinhardt, R.6
Vogel, J.7
Hess, W.R.8
Fischer, H.M.9
Evguenieva-Hackenberg, E.10
-
29
-
-
77955152087
-
Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity
-
Sharma UK, Chatterji D. 2010. Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity. FEMS Microbiol. Rev. 34:646-657. http://dx.doi.org/10.1111/j.1574-6976.2010 .00223.x.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 646-657
-
-
Sharma, U.K.1
Chatterji, D.2
-
30
-
-
33646471951
-
An internal antisense RNA regulates expression of the photosynthesis gene isiA
-
Dühring U, Axmann IM, Hess WR, Wilde A. 2006. An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U. S. A. 103:7054-7058. http://dx.doi.org/10.1073/pnas .0600927103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 7054-7058
-
-
Dühring, U.1
Axmann, I.M.2
Hess, W.R.3
Wilde, A.4
-
31
-
-
55949097145
-
Small RNAs establish delays and temporal thresholds in gene expression
-
Legewie S, Dienst D, Wilde A, Herzel H, Axmann IM. 2008. Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J. 95:3232-3238. http://dx.doi.org/10.1529/biophysj.108.133819.
-
(2008)
Biophys. J.
, vol.95
, pp. 3232-3238
-
-
Legewie, S.1
Dienst, D.2
Wilde, A.3
Herzel, H.4
Axmann, I.M.5
-
32
-
-
70349462763
-
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
-
Georg J, Voss B, Scholz I, Mitschke J, Wilde A, Hess WR. 2009. Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol. Syst. Biol. 5:305. http://dx.doi.org/10.1038/msb.2009.63.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 305
-
-
Georg, J.1
Voss, B.2
Scholz, I.3
Mitschke, J.4
Wilde, A.5
Hess, W.R.6
-
33
-
-
79952174199
-
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp PCC 6803
-
Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, Bantscheff J, Voss B, Steglich C, Wilde A, Vogel J, Hess WR. 2011. An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC 6803. Proc. Natl. Acad. Sci. U. S. A. 108:2124-2129. http://dx.doi.org/10.1073/pnas.1015154108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 2124-2129
-
-
Mitschke, J.1
Georg, J.2
Scholz, I.3
Sharma, C.M.4
Dienst, D.5
Bantscheff, J.6
Voss, B.7
Steglich, C.8
Wilde, A.9
Vogel, J.10
Hess, W.R.11
-
34
-
-
0018409915
-
Generic assignments, strain histories and properties of pure cultures of cyanobacteria
-
Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY. 1979. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111:1-61. http://dx.doi.org/10.1099 /00221287-111-1-1.
-
(1979)
J. Gen. Microbiol.
, vol.111
, pp. 1-61
-
-
Rippka, R.1
Deruelles, J.2
Waterbury, J.B.3
Herdman, M.4
Stanier, R.Y.5
-
35
-
-
0000621351
-
Light harvesting in Anacystis nidulans studied in pigment mutants
-
Myers J, Graham JR, Wang RT. 1980. Light harvesting in Anacystis nidulans studied in pigment mutants. Plant Physiol. 66:1144-1149. http: //dx.doi.org/10.1104/pp.66.6.1144.
-
(1980)
Plant Physiol
, vol.66
, pp. 1144-1149
-
-
Myers, J.1
Graham, J.R.2
Wang, R.T.3
-
36
-
-
0024235754
-
Cyanobacterial genetic tools: current status
-
Houmard J, de Marsac NT. 1988. Cyanobacterial genetic tools: current status. Methods Enzymol. 167:808-847. http://dx.doi.org/10.1016/0076 -6879(88)67092-3.
-
(1988)
Methods Enzymol
, vol.167
, pp. 808-847
-
-
Houmard, J.1
de Marsac, N.T.2
-
37
-
-
0033766119
-
Evaluation of DNA fragment sizing and quantification by the Agilent 2100 Bioanalyzer
-
Panaro NJ, Yuen PK, Sakazume T, Fortina P, Kricka LJ, Wilding P. 2000. Evaluation of DNA fragment sizing and quantification by the Agilent 2100 Bioanalyzer. Clin. Chem. 46:1851-1853.
-
(2000)
Clin. Chem.
, vol.46
, pp. 1851-1853
-
-
Panaro, N.J.1
Yuen, P.K.2
Sakazume, T.3
Fortina, P.4
Kricka, L.J.5
Wilding, P.6
-
38
-
-
33644872577
-
limma: linear models for microarray data
-
Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S (ed), Bioinformatics and computational biology solutions using R and Bioconductor. Springer, New York NY
-
Smyth GK. 2005. limma: linear models for microarray data, p 397-420. In Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S (ed), Bioinformatics and computational biology solutions using R and Bioconductor. Springer, New York, NY.
-
(2005)
, pp. 397-420
-
-
Smyth, G.K.1
-
39
-
-
84876973806
-
How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
-
Lehmann R, Machné R, Georg J, Benary M, Axmann I, Steuer R. 2013. How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics 14:133. http://dx.doi .org/10.1186/1471-2105-14-133.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 133
-
-
Lehmann, R.1
Machné, R.2
Georg, J.3
Benary, M.4
Axmann, I.5
Steuer, R.6
-
40
-
-
84947318637
-
Locally weighted regression: an approach to regression analysis by local fitting
-
Cleveland WS, Devlin SJ. 1988. Locally weighted regression: an approach to regression analysis by local fitting. J. Am. Stat. Assoc. 83:596-610. http: //dx.doi.org/10.1080/01621459.1988.10478639.
-
(1988)
J. Am. Stat. Assoc.
, vol.83
, pp. 596-610
-
-
Cleveland, W.S.1
Devlin, S.J.2
-
41
-
-
42449104860
-
Normalization of oligonucleotide arrays based on the least-variant set of genes
-
Calza S, Valentini D, Pawitan Y. 2008. Normalization of oligonucleotide arrays based on the least-variant set of genes. BMC Bioinformatics 9:140. http://dx.doi.org/10.1186/1471-2105-9-140.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 140
-
-
Calza, S.1
Valentini, D.2
Pawitan, Y.3
-
42
-
-
67649488081
-
flowClust: a Bioconductor package for automated gating of flow cytometry data
-
Lo K, Hahne F, Brinkman RR, Gottardo R. 2009. flowClust: a Bioconductor package for automated gating of flow cytometry data. BMC Bioinformatics 10:145. http://dx.doi.org/10.1186/1471-2105-10-145.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 145
-
-
Lo, K.1
Hahne, F.2
Brinkman, R.R.3
Gottardo, R.4
-
43
-
-
84856503492
-
The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms
-
Beck C, Knoop H, Axmann IM, Steuer R. 2012. The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics 13:56. http://dx.doi.org/10.1186/1471-2164-13-56.
-
(2012)
BMC Genomics
, vol.13
, pp. 56
-
-
Beck, C.1
Knoop, H.2
Axmann, I.M.3
Steuer, R.4
-
44
-
-
84883147219
-
Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling
-
Hernández-Prieto MA, Schon V, Georg J, Barreira L, Varela J, Hess WR, Futschik ME. 2012. Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling. G3 (Bethesda) 2:1475-1495. http://dx.doi.org /10.1534/g3.112.003863.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 1475-1495
-
-
Hernández-Prieto, M.A.1
Schon, V.2
Georg, J.3
Barreira, L.4
Varela, J.5
Hess, W.R.6
Futschik, M.E.7
-
45
-
-
84908187157
-
Comparative analysis of the primary transcriptome of Synechocystis sp. PCC 6803
-
in press
-
Kopf M, Klähn S, Scholz I, Matthiessen J, Hess WR, Voss B. Comparative analysis of the primary transcriptome of Synechocystis sp. PCC 6803. DNA Res., in press. http://dx.doi.org/10.1093/dnares/dsu018.
-
DNA Res
-
-
Kopf, M.1
Klähn, S.2
Scholz, I.3
Matthiessen, J.4
Hess, W.R.5
Voss, B.6
-
46
-
-
0032911045
-
Expression of the isiA gene is essential for the survival of the cyanobacterium Synechococcus sp PCC 7942 by protecting photosystem II from excess light under iron limitation
-
Park Y-I, Sandström S, Gustafsson P,Ö quist G. 1999. Expression of the isiA gene is essential for the survival of the cyanobacterium Synechococcus sp. PCC 7942 by protecting photosystem II from excess light under iron limitation. Mol. Microbiol. 32:123-129.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 123-129
-
-
Park, Y.-I.1
Sandström, S.2
Gustafsson, P.3
Öquist, G.4
-
47
-
-
84867135315
-
Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp PCC 6803
-
Sakurai I, Stazic D, Eisenhut M, Vuorio E, Steglich C, Hess WR, Aro EM. 2012. Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. Plant Physiol. 160:1000-1010. http://dx.doi.org/10.1104/pp.112.202127.
-
(2012)
Plant Physiol
, vol.160
, pp. 1000-1010
-
-
Sakurai, I.1
Stazic, D.2
Eisenhut, M.3
Vuorio, E.4
Steglich, C.5
Hess, W.R.6
Aro, E.M.7
-
48
-
-
84863321262
-
Operon flv4-flv2 provides cyanobacterial photosystem II with flexibility of electron transfer
-
Zhang P, Eisenhut M, Brandt AM, Carmel D, Silen HM, Vass I, Allahverdiyeva Y, Salminen TA, Aro EM. 2012. Operon flv4-flv2 provides cyanobacterial photosystem II with flexibility of electron transfer. Plant Cell 24:1952-1971. http://dx.doi.org/10.1105/tpc.111.094417.
-
(2012)
Plant Cell
, vol.24
, pp. 1952-1971
-
-
Zhang, P.1
Eisenhut, M.2
Brandt, A.M.3
Carmel, D.4
Silen, H.M.5
Vass, I.6
Allahverdiyeva, Y.7
Salminen, T.A.8
Aro, E.M.9
-
49
-
-
84866931878
-
The antisense RNA As1_flv4 in the cyanobacterium Synechocystis sp PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply
-
Eisenhut M, Georg J, Klahn S, Sakurai I, Mustila H, Zhang P, Hess WR, Aro EM. 2012. The antisense RNA As1_flv4 in the cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. J. Biol. Chem. 287:33153-33162. http://dx.doi.org/10.1074/jbc.M112.391755.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 33153-33162
-
-
Eisenhut, M.1
Georg, J.2
Klahn, S.3
Sakurai, I.4
Mustila, H.5
Zhang, P.6
Hess, W.R.7
Aro, E.M.8
-
50
-
-
84902834100
-
Diversity of KaiC-based timing systems in marine Cyanobacteria
-
Axmann IM, Hertel S, Wiegard A, Dorrich AK, Wilde A. Diversity of KaiC-based timing systems in marine Cyanobacteria. Mar. Genomics 14: 3-16. http://dx.doi.org/10.1016/j.margen.2013.12.006.
-
Mar. Genomics
, vol.14
, pp. 3-16
-
-
Axmann, I.M.1
Hertel, S.2
Wiegard, A.3
Dorrich, A.K.4
Wilde, A.5
-
51
-
-
0025801445
-
Light-activated heterotrophic growth of the cyanobacterium Synechocystis sp. strain PCC 6803 a blue-lightrequiring process
-
Anderson SL, McIntosh L. 1991. Light-activated heterotrophic growth of the cyanobacterium Synechocystis sp. strain PCC 6803: a blue-lightrequiring process. J. Bacteriol. 173:2761-2767.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 2761-2767
-
-
Anderson, S.L.1
McIntosh, L.2
-
52
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, Tanabe A, Golden SS, Johnson CH, Kondo T. 1998. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523. http://dx.doi.org/10.1126/science.281.5382.1519.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
Tanabe, A.6
Golden, S.S.7
Johnson, C.H.8
Kondo, T.9
-
53
-
-
84876931666
-
Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp PCC 6803 suggests their functional divergence
-
Wiegard A, Dörrich AK, Deinzer HT, Beck C, Wilde A, Holtzendorff J, Axmann IM. 2013. Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology 159:948-958. http://dx.doi.org/10.1099/mic.0.065425-0.
-
(2013)
Microbiology
, vol.159
, pp. 948-958
-
-
Wiegard, A.1
Dörrich, A.K.2
Deinzer, H.T.3
Beck, C.4
Wilde, A.5
Holtzendorff, J.6
Axmann, I.M.7
-
54
-
-
84870851200
-
Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp PCC 6803
-
Trautmann D, Voss B, Wilde A, Al-Babili S, Hess WR. 2012. Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803. DNA Res. 19:435-448. http://dx.doi.org/10.1093 /dnares/dss024.
-
(2012)
DNA Res
, vol.19
, pp. 435-448
-
-
Trautmann, D.1
Voss, B.2
Wilde, A.3
Al-Babili, S.4
Hess, W.R.5
-
55
-
-
84874722535
-
Non- optimal codon usage is a mechanism to achieve circadian clock conditionality
-
Xu Y, Ma PJ, Shah P, Rokas A, Liu Y, Johnson CH. 2013. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature 495:116-120. http://dx.doi.org/10.1038/nature11942.
-
(2013)
Nature
, vol.495
, pp. 116-120
-
-
Xu, Y.1
Ma, P.J.2
Shah, P.3
Rokas, A.4
Liu, Y.5
Johnson, C.H.6
-
56
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima M, Imai K, Ito H, Nishiwaki T, Murayama Y, Iwasaki H, Oyama T, Kondo T. 2005. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308:414-415. http: //dx.doi.org/10.1126/science.1108451.
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
57
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system
-
Kitayama Y, Iwasaki H, Nishiwaki T, Kondo T. 2003. KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J. 22:2127-2134. http://dx.doi.org/10.1093/emboj /cdg212.
-
(2003)
EMBO J
, vol.22
, pp. 2127-2134
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
58
-
-
1542345751
-
Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC
-
Hayashi F, Ito H, Fujita M, Iwase R, Uzumaki T, Ishiura M. 2004. Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC. Biochem. Biophys. Res. Commun. 316:195-202. http://dx.doi .org/10.1016/j.bbrc.2004.02.034.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.316
, pp. 195-202
-
-
Hayashi, F.1
Ito, H.2
Fujita, M.3
Iwase, R.4
Uzumaki, T.5
Ishiura, M.6
-
59
-
-
39749190658
-
Regulation of circadian clock gene expression by phosphorylation states of KaiC in cyanobacteria
-
Murayama Y, Oyama T, Kondo T. 2008. Regulation of circadian clock gene expression by phosphorylation states of KaiC in cyanobacteria. J. Bacteriol. 190:1691-1698. http://dx.doi.org/10.1128/JB.01693-07.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1691-1698
-
-
Murayama, Y.1
Oyama, T.2
Kondo, T.3
-
60
-
-
84875998739
-
Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock
-
Hertel S, Brettschneider C, Axmann IM. 2013. Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock. PLoS Comput. Biol. 9:e1002966. http://dx.doi.org/10.1371/journal.pcbi .1002966.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Hertel, S.1
Brettschneider, C.2
Axmann, I.M.3
-
61
-
-
84877587194
-
Robust circadian oscillations in growing cyanobacteria require transcriptional feedback
-
Teng SW, Mukherji S, Moffitt JR, de Buyl S, O'Shea EK. 2013. Robust circadian oscillations in growing cyanobacteria require transcriptional feedback. Science 340:737-740. http://dx.doi.org/10.1126/science.1230996.
-
(2013)
Science
, vol.340
, pp. 737-740
-
-
Teng, S.W.1
Mukherji, S.2
Moffitt, J.R.3
de Buyl, S.4
O'Shea, E.K.5
-
62
-
-
0024507744
-
Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells
-
Delong EF, Wickham GS, Pace NR. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363. http://dx.doi.org/10.1126/science.2466341.
-
(1989)
Science
, vol.243
, pp. 1360-1363
-
-
Delong, E.F.1
Wickham, G.S.2
Pace, N.R.3
-
63
-
-
0027264175
-
Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
-
Poulsen LK, Ballard G, Stahl DA. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59:1354-1360.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 1354-1360
-
-
Poulsen, L.K.1
Ballard, G.2
Stahl, D.A.3
-
64
-
-
0031661604
-
Nucleic acid content of Synechococcus spp. during growth in continuous light and light/dark cycles
-
Lepp PW, Schmidt TM. 1998. Nucleic acid content of Synechococcus spp. during growth in continuous light and light/dark cycles. Arch. Microbiol. 170:201-207. http://dx.doi.org/10.1007/s002030050634.
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 201-207
-
-
Lepp, P.W.1
Schmidt, T.M.2
-
65
-
-
0000994831
-
Distribution of soluble and ribosomal RNA as a function of growth rate
-
Kjeldgaard NO, Kurland CG. 1963. Distribution of soluble and ribosomal RNA as a function of growth rate. J. Mol. Biol. 6:341. http://dx.doi .org/10.1016/S0022-2836(63)80093-5.
-
(1963)
J. Mol. Biol.
, vol.6
, pp. 341
-
-
Kjeldgaard, N.O.1
Kurland, C.G.2
-
66
-
-
0013927706
-
Ribonucleic acid composition of bacteria as a function of growth rate
-
Rosset R, Julien J, Monier R. 1966. Ribonucleic acid composition of bacteria as a function of growth rate. J. Mol. Biol. 18:308-320. http://dx .doi.org/10.1016/S0022-2836(66)80248-6.
-
(1966)
J. Mol. Biol.
, vol.18
, pp. 308-320
-
-
Rosset, R.1
Julien, J.2
Monier, R.3
-
67
-
-
0018952979
-
The DNA RNA and protein composition of the cyanobacterium Anacystis nidulans grown in light- and carbon dioxide-limited chemostats
-
Parrott LM, Slater JH. 1980. The DNA, RNA and protein composition of the cyanobacterium Anacystis nidulans grown in light- and carbon dioxide-limited chemostats. Arch. Microbiol. 127:53-58. http://dx.doi.org/10 .1007/BF00414355.
-
(1980)
Arch. Microbiol.
, vol.127
, pp. 53-58
-
-
Parrott, L.M.1
Slater, J.H.2
-
68
-
-
0032855859
-
Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth
-
Kerkhof L, Kemp P. 1999. Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth. FEMS Microbiol. Ecol. 30:253-260. http://dx.doi.org/10.1111/j.1574-6941.1999.tb00653.x.
-
(1999)
FEMS Microbiol. Ecol.
, vol.30
, pp. 253-260
-
-
Kerkhof, L.1
Kemp, P.2
-
69
-
-
0029820872
-
rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli
-
Gourse RL, Gaal T, Bartlett MS, Appleman JA, Ross W. 1996. rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. Annu. Rev. Microbiol. 50:645-677. http://dx.doi.org /10.1146/annurev.micro.50.1.645.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 645-677
-
-
Gourse, R.L.1
Gaal, T.2
Bartlett, M.S.3
Appleman, J.A.4
Ross, W.5
-
70
-
-
84884188178
-
Nucleotide degradation and ribose salvage in yeast
-
Xu YF, Letisse F, Absalan F, Lu W, Kuznetsova E, Brown G, Caudy AA, Yakunin AF, Broach JR, Rabinowitz JD. 2013. Nucleotide degradation and ribose salvage in yeast. Mol. Syst. Biol. 9:665. http://dx.doi.org/10 .1038/msb.2013.21.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 665
-
-
Xu, Y.F.1
Letisse, F.2
Absalan, F.3
Lu, W.4
Kuznetsova, E.5
Brown, G.6
Caudy, A.A.7
Yakunin, A.F.8
Broach, J.R.9
Rabinowitz, J.D.10
-
71
-
-
0034646509
-
A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria
-
Iwasaki H, Williams SB, Kitayama Y, Ishiura M, Golden SS, Kondo T. 2000. A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101:223-233. http: //dx.doi.org/10.1016/S0092-8674(00)80832-6.
-
(2000)
Cell
, vol.101
, pp. 223-233
-
-
Iwasaki, H.1
Williams, S.B.2
Kitayama, Y.3
Ishiura, M.4
Golden, S.S.5
Kondo, T.6
-
72
-
-
33747061828
-
A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria
-
Takai N, Nakajima M, Oyama T, Kito R, Sugita C, Sugita M, Kondo T, Iwasaki H. 2006. A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 103:12109-12114. http://dx.doi.org/10.1073/pnas .0602955103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 12109-12114
-
-
Takai, N.1
Nakajima, M.2
Oyama, T.3
Kito, R.4
Sugita, C.5
Sugita, M.6
Kondo, T.7
Iwasaki, H.8
-
73
-
-
84867635545
-
Rhythmic ring-ring stacking drives the circadian oscillator clockwise
-
Chang YG, Tseng R, Kuo NW, LiWang A. 2012. Rhythmic ring-ring stacking drives the circadian oscillator clockwise. Proc. Natl. Acad. Sci. U. S. A. 109:16847-16851. http://dx.doi.org/10.1073/pnas.1211508109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 16847-16851
-
-
Chang, Y.G.1
Tseng, R.2
Kuo, N.W.3
LiWang, A.4
-
74
-
-
84874603690
-
Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator
-
Pattanayek R, Yadagiri KK, Ohi MD, Egli M. 2013. Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator. Cell Cycle 12:810-817. http://dx.doi.org/10.4161/cc.23757.
-
(2013)
Cell Cycle
, vol.12
, pp. 810-817
-
-
Pattanayek, R.1
Yadagiri, K.K.2
Ohi, M.D.3
Egli, M.4
-
75
-
-
84863987120
-
Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions
-
Gierga G, Voss B, Hess WR. 2012. Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions. ISME J. 6:1544-1557. http://dx.doi.org/10.1038/ismej.2011.215.
-
(2012)
ISME J
, vol.6
, pp. 1544-1557
-
-
Gierga, G.1
Voss, B.2
Hess, W.R.3
|