Genome-wide annotation and functional identification of aphid GLUT-like sugar transporters

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Price, Daniel R G ^a   Gatehouse, John A ^a  

^a DURHAM UNIVERSITY   (United Kingdom)

Author keywords

Facilitative transport; Hexose sugars; Major facilitator superfamily; Membrane transport; Uniport

Indexed keywords

CARRIER PROTEIN; INSECT PROTEIN; SUGAR TRANSPORTER 1; SUGAR TRANSPORTER 3; SUGAR TRANSPORTER 4; SUGAR TRANSPORTER 9; UNCLASSIFIED DRUG; FRUCTOSE; GLUCOSE; GLUCOSE TRANSPORTER;

ADULT; ARTICLE; CONTROLLED STUDY; FEMALE; GLUCOSE TRANSPORT; HEXOSE TRANSPORT; INSECT GENETICS; MOLECULAR PHYLOGENY; NONHUMAN; PEA APHID; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; ANIMAL; APHID; CELL MEMBRANE; CYTOLOGY; EXPRESSED SEQUENCE TAG; GENETICS; GENOMICS; HUMAN; INTESTINE; MALE; METABOLISM; MOLECULAR GENETICS; PHYLOGENY;

APHIDIDAE;

ANIMALS; APHIDS; CELL MEMBRANE; EXPRESSED SEQUENCE TAGS; FEMALE; FRUCTOSE; GENOMICS; GLUCOSE; GLUCOSE TRANSPORT PROTEINS, FACILITATIVE; HUMANS; INSECT PROTEINS; INTESTINES; MALE; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY;

EID: 84905820788     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-647     Document Type: Article

References (43)

1. Febvay G, Rahbe Y, Rynkiewicz M, Guillaud J, Bonnot G. Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, Acyrthosiphon pisum, reared on different diets. J Exp Biol 1999, 202(19):2639-2652.
2. Rhodes JD, Croghan PC, Dixon AFG. Uptake, excretion and respiration of sucrose and amino acids by the pea aphid Acyrthosiphon pisum. J Exp Biol 1996, 199(6):1269-1276.
3. Rhodes JD, Croghan PC, Dixon AFG. Dietary sucrose and oligosaccharide synthesis in relation to osmoregulation in the pea aphid, Acyrthosiphon pisum. Physiol Entomol 1997, 22(4):373-379.
4. Price DRG, Karley AJ, Ashford DA, Isaacs HV, Pownall ME, Wilkinson HS, Gatehouse JA, Douglas AE. Molecular characterisation of a candidate gut sucrase in the pea aphid, Acyrthosiphon pisum. Insect Biochem Mol Biol 2007, 37(4):307-317.
5. Ashford DA, Smith WA, Douglas AE. Living on a high sugar diet: the fate of sucrose ingested by a phloem-feeding insect, the pea aphid Acyrthosiphon pisum. J Insect Physiol 2000, 46(3):335-341.
6. Cristofoletti PT, Ribeiro AF, Deraison C, Rahbe Y, Terra WR. Midgut adaptation and digestive enzyme distribution in a phloem feeding insect, the pea aphid Acyrthosiphon pisum. J Insect Physiol 2003, 49(1):11-24.
7. Reddy VS, Shlykov MA, Castillo R, Sun EI, Saier MH. The major facilitator superfamily (MFS) revisited. FEBS J 2012, 279(11):2022-2035.
8. Thorens B, Mueckler M. Glucose transporters in the 21st century. Am J Physiol Endocrinol Metab 2010, 298(2):E141-E145.
9. Manolescu AR, Witkowska K, Kinnaird A, Cessford T, Cheeseman C. Facilitated hexose transporters: new perspectives on form and function. Physiology 2007, 22:234-240.
10. Saier MH. Families of transmembrane sugar transport proteins. Mol Microbiol 2000, 35(4):699-710.
11. Mueckler M, Thorens B. The SLC2 (GLUT) family of membrane transporters. Mol Asp Med 2013, 34(2-3):121-138.
12. International Aphid Genomics Consortium Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol 2010, 8(2):e1000313. International Aphid Genomics Consortium.
13. Price DRG, Tibbles K, Shigenobu S, Smertenko A, Russell CW, Douglas AE, Fitches E, Gatehouse AMR, Gatehouse JA. Sugar transporters of the major facilitator superfamily in aphids; from gene prediction to functional characterization. Insect Mol Biol 2010, 19:97-112.
14. Kikuta S, Kikawada T, Hagiwara-Komoda Y, Nakashima N, Noda H. Sugar transporter genes of the brown planthopper, Nilaparvata lugens: a facilitated glucose/fructose transporter. Insect Biochem Mol Biol 2010, 40(11):805-813.
15. Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT Method. Methods 2001, 25(4):402-408.
16. Wieczorke R, Krampe S, Weierstall T, Freidel K, Hollenberg CP, Boles E. Concurrent knock-out of at least 20 transporter genes is required to block uptake of hexoses in Saccharomyces cerevisiae. FEBS Lett 1999, 464(3):123-128.
17. Ward A, Sanderson NM, O'Reilly J, Rutherford NG, Poolman B, Henderson PJF. The amplified expression, identification, purification, assay, and properties ofhexahistidine-tagged bacterial membrane transport proteins. Membrane Transport 2000, 141-166. Oxford: Oxford University Press, Baldwin SA.
18. Marger MD, Saier MH. A major superfamily of transmembrane facilitators that catalyze uniport, symport and antiport. Trends Biochem Sci 1993, 18(1):13-20.
19. Saier MH. A functional-phylogenetic classification system for transmembrane solute transporters. Microbiol Mol Biol Rev 2000, 64(2):354-411.
20. Shigenobu S, Richards S, Cree A, Morioka M, Fukatsu T, Kudo T, Miyagishima S, Gibbs R, Stern D, Nakabachi A. A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum. Insect Mol Biol 2010, 19(s2):23-31.
21. Seatter MJ, De la Rue SA, Porter LM, Gould GW. QLS motif in transmembrane helix VII of the glucose transporter family interacts with the C-1 position of D-glucose and is involved in substrate selection at the exofacial binding site. Biochemistry 1998, 37(5):1322-1326.
22. Labarchives Repository http://dx.doi.org/10.6070/H48P5XG5.
23. Price DRG, Wilkinson HS, Gatehouse JA. Functional expression and characterisation of a gut facilitative glucose transporter, NIHT1, from the phloem-feeding insect Nilaparvata lugens (rice brown planthopper). Insect Biochem Mol Biol 2007, 37:1138-1148.
24. Moriwaki N, Matsushita K, Nishina M, Kono Y. High concentrations of trehalose in aphid hemolymph. Appl Entomol Zool 2003, 38(2):241-248.
25. Arbuckle MI, Kane S, Porter LM, Seatter MJ, Gould GW. Structure-function analysis of liver-type (GLUT2) and brain-type (GLUT3) glucose transporters: expression of chimeric transporters in Xenopus oocytes suggests an important role for putative transmembrane helix 7 in determining substrate selectivity. Biochemistry 1996, 35(51):16519-16527.
26. Wright EM, Loo DDF, Hirayama BA. Biology of human sodium glucose transporters. Physiol Rev 2011, 91(2):733-794.
27. Darby AC, Douglas AE. Elucidation of the transmission patterns of an insect-borne bacterium. Appl Environ Microbiol 2003, 69(8):4403-4407.
28. Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT, White O. TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res 2001, 29(1):41-43.
29. Eddy SR. Profile hidden Markov models. Bioinformatics 1998, 14(9):755-763.
30. Noda H, Kawai S, Koizumi Y, Matsui K, Zhang Q, Furukawa S, Shimomura M, Mita K. Annotated ESTs from various tissues of the brown planthopper Nilaparvata lugens: a genomic resource for studying agricultural pests. BMC Genomics 2008, 9:117.
31. Bass C, Hebsgaard MB, Hughes J. Genomic resources for the brown planthopper, Nilaparvata lugens: transcriptome pyrosequencing and microarray design. Insect Sci 2012, 19(1):1-12.
32. Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Marcet-Houben M, Gabaldon T. PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res 2014, 42(Database issue):D897-902.
33. Price DR, Feng H, Baker JD, Bavan S, Luetje CW, Wilson AC. Aphid amino acid transporter regulates glutamine supply to intracellular bacterial symbionts. Proc Natl Acad Sci U S A 2014, 111(1):320-325.
34. Price DRG, Duncan RP, Shigenobu S, Wilson ACC. Genome expansion and differential expression of amino acid transporters at the aphid/Buchnera symbiotic interface. Mol Biol Evol 2011, 28(11):3113-3126.
35. Kozak M. Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem 1991, 266(30):19867-19870.
36. Gietz RD, Schiestl RH. Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2007, 2(1):35-37.
37. Sauer N, Stolz J. Expression of foreign transport proteins in yeast. Membrane Transport 2000, 79-105. Oxford: Oxford University Press, Baldwin SA.
38. Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305(3):567-580.
39. Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157(1):105-132.
40. Blom N, Gammeltoft S, Brunak S. Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 1999, 294(5):1351-1362.
41. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797.
42. Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 2009, 25(15):1972-1973.
43. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28(10):2731-2739.