-
1
-
-
37249005195
-
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
-
Brent, M.R. (2008) Steady progress and recent breakthroughs in the accuracy of automated genome annotation. Nat Rev Genet 9: 62-73.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 62-73
-
-
Brent, M.R.1
-
2
-
-
0032994361
-
High-efficiency full-length cDNA cloning
-
Carninci, P. and Hayashizaki, Y. (1999) High-efficiency full-length cDNA cloning. Methods Enzymol 303: 19-44.
-
(1999)
Methods Enzymol
, vol.303
, pp. 19-44
-
-
Carninci, P.1
Hayashizaki, Y.2
-
3
-
-
0030298436
-
High-efficiency full-length cDNA cloning by biotinylated CAP trapper
-
Carninci, P., Kvam, C., Kitamura, A., Ohsumi, T., Okazaki, Y., Itoh, M. et al. (1996) High-efficiency full-length cDNA cloning by biotinylated CAP trapper. Genomics 37: 327-336.
-
(1996)
Genomics
, vol.37
, pp. 327-336
-
-
Carninci, P.1
Kvam, C.2
Kitamura, A.3
Ohsumi, T.4
Okazaki, Y.5
Itoh, M.6
-
4
-
-
0033791308
-
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes
-
Carninci, P., Shibata, Y., Hayatsu, N., Sugahara, Y., Shibata, K., Itoh, M. et al. (2000) Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res 10: 1617-1630.
-
(2000)
Genome Res
, vol.10
, pp. 1617-1630
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
Sugahara, Y.4
Shibata, K.5
Itoh, M.6
-
5
-
-
0035417016
-
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis
-
Carninci, P., Shibata, Y., Hayatsu, N., Itoh, M., Shiraki, T., Hiro-zane, T. et al. (2001) Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis. Genomics 77: 79-90.
-
(2001)
Genomics
, vol.77
, pp. 79-90
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
Itoh, M.4
Shiraki, T.5
Hiro-Zane, T.6
-
6
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M., Amit, I., Garber, M., French, C., Lin, M.F., Feldser, D. et al. (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458: 223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
-
7
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
8
-
-
77649141259
-
Genome sequence of the pea aphid Acyrthosiphon pisum
-
International Aphid Genomics Consortium DOI 10.1371/journal.pbio.1000313
-
International Aphid Genomics Consortium (2010). Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol, DOI 10.1371/journal.pbio.1000313.
-
(2010)
PLoS Biol
-
-
-
9
-
-
77957899855
-
Bioinformatic prediction, deep sequencing of microRNAs and their role in phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
-
in review
-
Legeai, F., Rizk, G., Walsh, T., Edwards, O., Gordon, K., Lave-nier, D. et al. (2009) Bioinformatic prediction, deep sequencing of microRNAs and their role in phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. Insect Mol Biol in review.
-
(2009)
Insect Mol Biol
-
-
Legeai, F.1
Rizk, G.2
Walsh, T.3
Edwards, O.4
Gordon, K.5
Lave-Nier, D.6
-
10
-
-
77954226464
-
AphidBase: A centralized bioinformatic resource for annotation of the pea aphid genome
-
Legeai, F., Shigenobu, S., Gauthier, J., Colbourne, J., Rispe, C., Collin, O. et al. (2010) AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Mol Biol 19 (Suppl. 2): 53-60.
-
(2010)
Insect Mol Biol
, vol.19
, Issue.SUPPL. 2
, pp. 53-60
-
-
Legeai, F.1
Shigenobu, S.2
Gauthier, J.3
Colbourne, J.4
Rispe, C.5
Collin, O.6
-
11
-
-
17244373103
-
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium Buchnera
-
Nakabachi, A., Shigenobu, S., Sakazume, N., Shiraki, T., Hayashizaki, Y., Carninci, P. et al. (2005) Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium Buchnera. Proc Natl Acad Sci USA 102: 5477-5482.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5477-5482
-
-
Nakabachi, A.1
Shigenobu, S.2
Sakazume, N.3
Shiraki, T.4
Hayashizaki, Y.5
Carninci, P.6
-
12
-
-
58149178579
-
NCBI Reference Sequences: Current status, policy and new initiatives
-
Pruitt, K.D., Tatusova, T., Klimke, W. and Maglott, D.R. (2009) NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 37: D32-36.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pruitt, K.D.1
Tatusova, T.2
Klimke, W.3
Maglott, D.R.4
-
13
-
-
33745056689
-
Large-scale gene discovery in the pea aphid. Acyrthosiphon pisum (Hemiptera)
-
Sabater-Muñoz, B., Legeai, F., Rispe, C., Bonhomme, J., Dearden, P.K., Dossat, C. et al. (2006) Large-scale gene discovery in the pea aphid, Acyrthosiphon pisum (Hemiptera). Genome Biol 7: R21.
-
(2006)
Genome Biol
, vol.7
-
-
Sabater-Muñoz, B.1
Legeai, F.2
Rispe, C.3
Bonhomme, J.4
Dearden, P.K.5
Dossat, C.6
-
14
-
-
0034996801
-
Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method
-
Shibata, Y., Carninci, P., Watahiki, A., Shiraki, T., Konno, H., Muramatsu, M. et al. (2001) Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method. BioTechniques 30: 1250-1254.
-
(2001)
BioTechniques
, vol.30
, pp. 1250-1254
-
-
Shibata, Y.1
Carninci, P.2
Watahiki, A.3
Shiraki, T.4
Konno, H.5
Muramatsu, M.6
-
15
-
-
77954225164
-
Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: Frequent lineage-specific duplications and losses of developmental genes
-
Shigenobu, S., Bickel, R.D., Brisson, J.A., Butts, T., Chang, C.-C., Christiaens, O. et al. (2010) Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes. Insect Mol Biol 19 (Suppl. 2): 71-86.
-
(2010)
Insect Mol Biol
, vol.19
, Issue.SUPPL. 2
, pp. 71-86
-
-
Shigenobu, S.1
Bickel, R.D.2
Brisson, J.A.3
Butts, T.4
Chang, C.-C.5
Christiaens, O.6
-
16
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater, G.S. and Birney, E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformat-ics 6: 31.
-
(2005)
BMC Bioinformat-ics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
17
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
Stanke, M., Diekhans, M., Baertsch, R. and Haussler, D. (2008) Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24: 637-644.
-
(2008)
Bioinformatics
, vol.24
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
18
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.
-
(2002)
Genome Res
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
-
19
-
-
0035941474
-
Comparative evaluation of 5′-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries
-
Sugahara, Y., Carninci, P., Itoh, M., Shibata, K., Konno, H., Endo, T. et al. (2001) Comparative evaluation of 5′-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries. Gene 263 (1-2): 93-102.
-
(2001)
Gene
, vol.263
, Issue.1-2
, pp. 93-102
-
-
Sugahara, Y.1
Carninci, P.2
Itoh, M.3
Shibata, K.4
Konno, H.5
Endo, T.6
-
20
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
21
-
-
33645461833
-
A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola
-
Wilson, A.C., Dunbar, H.E., Davis, G.K., Hunter, W.B., Stern, D.L. and Moran, N.A. (2006) A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola. BMC Genomics 7: 50.
-
(2006)
BMC Genomics
, vol.7
, pp. 50
-
-
Wilson, A.C.1
Dunbar, H.E.2
Davis, G.K.3
Hunter, W.B.4
Stern, D.L.5
Moran, N.A.6
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