Genomic resources for the brown planthopper, Nilaparvata lugens: Transcriptome pyrosequencing and microarray design

Insect Science

Volumn 19, Issue 1, 2012, Pages 1-12

  Bass, Chris ^a   Hebsgaard, Martin Bay ^b   Hughes, Joseph ^c  

^a ROTHAMSTED RESEARCH   (United Kingdom)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

^c UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Brown planthopper; Detoxification enzymes; Insecticide resistance; Nilaparvata lugens; Transcriptome sequencing

Indexed keywords

ARCHAEORRHYNCHA; HEXAPODA; NILAPARVATA LUGENS;

EID: 84856467843     PISSN: 16729609     EISSN: 17447917     Source Type: Journal    
DOI: 10.1111/j.1744-7917.2011.01440.x     Document Type: Article

References (33)

1. Abascal, F., Zardoya, R. and Posada, D. (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics, 21, 2104-2105.
2. Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552.
3. Claudianos, C., Ranson, H., Johnson, R., Biswas, S., Schuler, M., Berenbaum, M., Feyereisen, R. and Oakeshott, J. (2006) A deficit of detoxification enzymes: pesticide sensitivity and environmental response in the honeybee. Insect Molecular Biology, 15, 615-636.
4. Du, B., Zhang, W., Liu, B., Hu, J., Wei, Z., Shi, Z., He, R., Zhu, L., Chen, R., Han, B. and He, G. (2009) Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. Proceedings of the National Academy of Sciences of the United States of America, 106, 22163-22168.
5. Feyereisen, R. (1995) Molecular biology of insecticide resistance. Toxicology letters, 82-83, 83-90.
6. Feyereisen, R. (2006) Evolution of insect P450. Biochemical Society Transactions, 34, 1252-1255.
7. Finn, R.D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J.E., Gavin, O.L., Gunasekaran, P., Ceric, G., Forslund, K., Holm, L., Sonnhammer, E.L., Eddy, S.R. and Bateman, A. (2010) The Pfam protein families database. Nucleic Acids Research, 38, D211-D222.
8. Francis, F., Vanhaelen, N. and Haubruge, E. (2005) Glutathione S-transferases in the adaptation to plant secondary metabolites in the Myzus persicae aphid. Archives of Insect Biochemistry and Physiology, 58, 166-174.
9. Gorman, K., Liu, Z., Denholm, I., Brüggen, K.-U. and Nauen, R. (2008) Neonicotinoid resistance in rice brown planthopper, Nilaparvata lugens. Pest Management Science, 64, 1122-1125.
10. Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology, 59, 307-321.
11. Guindon, S. and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
12. Hemingway, J., Karunaratne, S.H.P.P. and Claridge, M.F. (1999) Insecticide resistance spectrum and underlying resistance mechanisms in tropical populations of the brown planthopper (Nilaparvata lugens) collected from rice and the wild grass Leersia hexandra. International Journal of Pest Management, 45, 215-223.
13. International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biology, 8, e1000313.
14. Katoh, K. and Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
15. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., Mcgettigan, P.A., Mcwilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J. and Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948.
16. Li, X., Schuler, M.A. and Berenbaum, M.R. (2007) Molecular mechanisms of metabolic resistance to synthetic and natural xenobiotics. Annual Review of Entomology, 52, 231-253.
17. Liu, Z., Williamson, M.S., Lansdell, S.J., Denholm, I., Han, Z. and Millar, N.S. (2005) A nicotinic acetylcholine receptor mutation conferring target-site resistance to imidacloprid in Nilaparvata lugens (brown planthopper). Proceedings of the National Academy of Sciences of the United States of America, 102, 8420-8425.
18. Mao, W., Berhow, M.A., Zangerl, A.R., Mcgovern, J. and Berenbaum, M.R. (2006) Cytochrome P450-mediated metabolism of xanthotoxin by Papilio multicaudatus. Journal of Chemical Ecology, 32, 523-536.
19. Min, X.J., Butler, G., Storms, R. and Tsang, A. (2005) OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Research, 33, W677-W680.
20. Nagata, T., Kamimuro, T., Wang, Y.C., Han, S.G. and Noor, N. Mohd. (2002) Recent status of insecticide resistance of long-distance migrating rice planthoppers monitored in Japan, China and Malaysia. Journal of Asia-Pacific Entomology, 5, 113-116.
21. Nauen, R. and Denholm, I. (2005) Resistance of insect pests to neonicotinoid insecticides: current status and future prospects. Archives of Insect Biochemistry and Physiology, 58, 200-215.
22. Noda, H., Kawai, S., Koizumi, Y., Matsui, K., Zhang, Q., Furukawa, S., Shimomura, M. and Mita, K. (2008) Annotated ESTs from various tissues of the brown planthopper Nilaparvata lugens: a genomic resource for studying agricultural pests. BMC Genomics, 9, 117.
23. Parkinson, J., Anthony, A., Wasmuth, J., Schmid, R., Hedley, A. and Blaxter, M. (2004) PartiGene - constructing partial genomes. Bioinformatics, 20, 1398-1404.
24. Ramsey, J.S., Rider, D.S., Walsh, T.K., De Vos, M., Gordon, K.H.J., Ponnala, L., Macmil, S.L., Roe, B.A. and Jander, G. (2010) Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae. Insect Molecular Biology, 19, 155-164.
25. Ranson, H., Claudianos, C., Ortelli, F., Abgrall, C., Hemingway, J., Sharakhova, M.V., Unger, M.F., Collins, F.H. and Feyereisen, R. (2002) Evolution of supergene families associated with insecticide resistance. Science, 298, 179-181.
26. Savard, J., Tautz, D., Richards, S., Weinstock, G.M., Gibbs, R.A., Werren, J.H., Tettelin, H. and Lercher, M.J. (2006) Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Research, 16, 1334-1338.
27. Schmid, R. and Blaxter, M.L. (2008) annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinformatics, 9, 180.
28. Small, G. and Hemingway, J. (2000) Molecular characterization of the amplified carboxylesterase gene associated with organophosphorus insecticide resistance in the brown planthopper, Nilaparvata lugens. Insect Molecular Biology, 647-653.
29. Snyder, M.J. and Glendinning, J.I. (1996) Causal connection between detoxification enzyme activity and consumption of a toxic plant compound. Journal of Comparative Physiology, A, Sensory, Neural, and Behavioral Physiology, 179, 255-261.
30. Thompson, G.A. and Goggin, F.L. (2006) Transcriptomics and functional genomics of plant defence induction by phloem-feeding insects. Journal of Experimental Botany, 57, 755-766.
31. Vontas, J., Small, G., Nikou, D., Ranson, H. and Hemingway, J. (2002) Purification, molecular cloning and heterologous expression of a glutathione S-transferase involved in insecticide resistance from the rice brown planthopper, Nilaparvata lugens. Biochemical Journal, 362, 329-337.
32. Wang, Y., Chen, J., Zhu, Y.C., Ma, C., Huang, Y. and Shen, J. (2008) Susceptibility to neonicotinoids and risk of resistance development in the brown planthopper, Nilaparvata lugens (Stål) (Homoptera: Delphacidae). Pest Management Science, 64, 1278-1284.
33. Zhang, Q. (2007) Strategies for developing Green Super Rice. Proceedings of the National Academy of Sciences of the United States of America, 104, 16402-16409.