메뉴 건너뛰기




Volumn 41, Issue 5, 2014, Pages 3081-3090

In-silico mining, type and frequency analysis of genic microsatellites of finger millet (Eleusine coracana (L.) Gaertn.): A comparative genomic analysis of NBS-LRR regions of finger millet with rice

Author keywords

Comparative genomics; EST SSRs; Finger millet; In silico analysis; NBS LRR regions

Indexed keywords

MICROSATELLITE DNA;

EID: 84905674887     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3168-8     Document Type: Article
Times cited : (27)

References (40)
  • 1
    • 23244433396 scopus 로고    scopus 로고
    • Production of transgenic plants resistant to leaf blast disease in finger millet (Eleusine coracana (L.) Gaertn.)
    • Latha MA, Venkateswara Rao K, Dashavantha Reddy V (2005) Production of transgenic plants resistant to leaf blast disease in finger millet (Eleusine coracana (L.) Gaertn.). Plant Sci 169:657-667
    • (2005) Plant Sci , vol.169 , pp. 657-667
    • Latha, M.A.1    Venkateswara Rao, K.2    Dashavantha Reddy, V.3
  • 3
    • 54349089569 scopus 로고    scopus 로고
    • Efficient somatic embryogenesis and plant regeneration from shoot apex explants of different Indian genotypes of finger millet (Eleusine coracana (L.) Gaertn.)
    • Ceasar SA, Ignacimuthu S (2008) Efficient somatic embryogenesis and plant regeneration from shoot apex explants of different Indian genotypes of finger millet (Eleusine coracana (L.) Gaertn.). In Vitro Cell Dev Biol Plant 44:427-435
    • (2008) In Vitro Cell Dev Biol Plant , vol.44 , pp. 427-435
    • Ceasar, S.A.1    Ignacimuthu, S.2
  • 4
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • DOI 10.1046/j.0962-1083.2001.01418.x
    • Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11:1-16 (Pubitemid 34108467)
    • (2002) Molecular Ecology , vol.11 , Issue.1 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 9
    • 4043140958 scopus 로고    scopus 로고
    • Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
    • DOI 10.1139/G04-057
    • Yu J-K, Dake TM, Singh S, Benscher D, Li W, Gill B, Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818 (Pubitemid 40033894)
    • (2004) Genome , vol.47 , Issue.5 , pp. 805-818
    • Yu, J.-K.1    Dake, T.M.2    Singh, S.3    Benscher, D.4    Li, W.5    Gill, B.6    Sorrells, M.E.7
  • 10
    • 79958286744 scopus 로고    scopus 로고
    • Development and characterization of EST based SSR markers in Madagascar periwinkle (Catharanthus roseus) and their transferability in other medicinal plants
    • Mishra RK, Gangadhar BH, Jae Woong Yu, Doo Hwan Kim, Se Won Park (2011) Development and characterization of EST based SSR markers in Madagascar periwinkle (Catharanthus roseus) and their transferability in other medicinal plants. Plant Omics J 4(3):154-162
    • (2011) Plant Omics J , vol.4 , Issue.3 , pp. 154-162
    • Mishra, R.K.1    Gangadhar, B.H.2    Yu, J.W.3    Kim, D.H.4    Park, S.W.5
  • 11
    • 77957901667 scopus 로고    scopus 로고
    • A fast and cost effective approach to develop and map EST-SSR markers: Oak as a case study
    • Durand J, Catherine B, Emilie C, Frigerio JM et al (2010) A fast and cost effective approach to develop and map EST-SSR markers: oak as a case study. BMC Genom 11:570-583
    • (2010) BMC Genom , vol.11 , pp. 570-583
    • Durand, J.1    Catherine, B.2    Emilie, C.3    Frigerio, J.M.4
  • 13
    • 40749095606 scopus 로고    scopus 로고
    • Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula
    • Carine AT, Wang BB, Majesta SO, Shweta D, Zhu HY, Bruce R, Nevin DY, Steven BC (2008) Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol 146:5-21
    • (2008) Plant Physiol , vol.146 , pp. 5-21
    • Carine, A.T.1    Wang, B.B.2    Majesta, S.O.3    Shweta, D.4    Zhu, H.Y.5    Bruce, R.6    Nevin, D.Y.7    Steven, B.C.8
  • 15
    • 0037390933 scopus 로고    scopus 로고
    • Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
    • DOI 10.1105/tpc.009308
    • Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR encoding genes in Arabidopsis. Plant Cell 15:809-834 (Pubitemid 36453281)
    • (2003) Plant Cell , vol.15 , Issue.4 , pp. 809-834
    • Meyers, B.C.1    Kozik, A.2    Griego, A.3    Kuang, H.4    Michelmore, R.W.5
  • 16
    • 0033231602 scopus 로고    scopus 로고
    • Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily
    • Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332 (Pubitemid 129515914)
    • (1999) Plant Journal , vol.20 , Issue.3 , pp. 317-332
    • Meyers, B.C.1    Dickerman, A.W.2    Michelmore, R.W.3    Sivaramakrishnan, S.4    Sobral, B.W.5    Young, N.D.6
  • 17
    • 18144417125 scopus 로고    scopus 로고
    • Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.)
    • He L, Du C, Covaleda L, Xu Z, Robinson AF, Yu JZ, Kohel RJ, Zhang HB (2004) Cloning, characterization, and evolution of the NBSLRR - encoding resistance gene analogue family in polyploidy cotton (Gossypium hirsutum L.). Mol Plant Microbe Interact 17:1234-1241 (Pubitemid 39428880)
    • (2004) Molecular Plant-Microbe Interactions , vol.17 , Issue.11 , pp. 1234-1241
    • He, L.1    Du, C.2    Covaleda, L.3    Xu, Z.4    Robinson, A.F.5    Yu, J.Z.6    Kohel, R.J.7    Zhang, H.-B.8
  • 18
    • 0036212554 scopus 로고    scopus 로고
    • Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies
    • DOI 10.1007/s00239-001-0057-2
    • Cannon SB, Shu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol 54:548-562 (Pubitemid 34271135)
    • (2002) Journal of Molecular Evolution , vol.54 , Issue.4 , pp. 548-562
    • Cannon, S.B.1    Zhu, H.2    Baumgarten, A.M.3    Spangler, R.4    May, G.5    Cook, D.R.6    Young, N.D.7
  • 19
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4326
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4326
    • Murray, M.G.1    Thompson, W.F.2
  • 22
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 23
    • 84905682295 scopus 로고    scopus 로고
    • Identification and characterization of EST-SSRs in finger millet (Eleusine coracana (L.) Gaertn.)
    • Reddy BLIN, Lakshmi NM, Sivaramakrishnan S (2012) Identification and characterization of EST-SSRs in finger millet (Eleusine coracana (L.) Gaertn.). J Crop Sci Biotech 15(1):9-16
    • (2012) J Crop Sci Biotech , vol.15 , Issue.1 , pp. 9-16
    • Reddy, B.L.I.N.1    Lakshmi, N.M.2    Sivaramakrishnan, S.3
  • 24
    • 78651510415 scopus 로고    scopus 로고
    • In silico comparative analysis of SSR markers in plants
    • Victoria FC, da Maia Luciano C, de Oliveira Antonio C (2011) In silico comparative analysis of SSR markers in plants. BMC Plant Biol 11:15-30
    • (2011) BMC Plant Biol , vol.11 , pp. 15-30
    • Victoria, F.C.1    Da Maia, L.C.2    De Oliveira, A.C.3
  • 25
    • 77649112643 scopus 로고    scopus 로고
    • Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) maxim
    • Zeng S, Xiao G, Guo J, Fei Z, Xu Y, Bruce A Roe, Wang Y (2010) Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) maxim. BMC Genom 11:94-105
    • (2010) BMC Genom , vol.11 , pp. 94-105
    • Zeng, S.1    Xiao, G.2    Guo, J.3    Fei, Z.4    Xu, Y.5    Roe, B.A.6    Wang, Y.7
  • 26
    • 33847368679 scopus 로고    scopus 로고
    • Development of EST-SSR in foxtail millet (Setaria italica)
    • J
    • Jia XP, Shi YS, Song YC (2007) Development of EST-SSR in foxtail millet (Setaria italica) [J]. Genet Resour Crop Evol 54:233-236
    • (2007) Genet Resour Crop Evol , vol.54 , pp. 233-236
    • Jia, X.P.1    Shi, Y.S.2    Song, Y.C.3
  • 27
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • DOI 10.1023/A:1014875206165
    • Kantety RV, La Rota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510 (Pubitemid 34415968)
    • (2002) Plant Molecular Biology , vol.48 , Issue.5-6 , pp. 501-510
    • Kantety, R.V.1    La, R.M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 28
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST database for the development and characterization of gen-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422 (Pubitemid 36599853)
    • (2003) Theoretical and Applied Genetics , vol.106 , Issue.3 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 30
    • 0036428541 scopus 로고    scopus 로고
    • In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    • Varshney RK, Thiel T, Stein N, Langridge P, Graner A (2002) In silico analysis on frequency and distribution of microsatel lites in ESTs of some cereal species. Cell Mol Biol Lett 7:537-546 (Pubitemid 35345803)
    • (2002) Cellular and Molecular Biology Letters , vol.7 , Issue.2 A , pp. 537-546
    • Varshney, R.K.1    Thiel, T.2    Langridge, N.S.P.3    Graner, A.4
  • 31
    • 34548077860 scopus 로고    scopus 로고
    • Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
    • Asp T, Frei UK, Didion T, Nielsen KK, Lubberstedt T (2007) Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol 7:36-47
    • (2007) BMC Plant Biol , vol.7 , pp. 36-47
    • Asp, T.1    Frei, U.K.2    Didion, T.3    Nielsen, K.K.4    Lubberstedt, T.5
  • 32
    • 34547730221 scopus 로고    scopus 로고
    • Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes
    • DOI 10.1007/s00122-007-0582-5
    • Srinivasachary Dida MM, Gale MD, Devos KM (2007) Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes. Theor Appl Genet 115:489-499 (Pubitemid 47228693)
    • (2007) Theoretical and Applied Genetics , vol.115 , Issue.4 , pp. 489-499
    • Srinivasachary1    Dida, M.M.2    Gale, M.D.3    Devos, K.M.4
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 80052482640 scopus 로고    scopus 로고
    • Functional markers based molecular characterization and cloning of resistance gene analogs encoding NBS-LRR disease resistance proteins in finger millet (Eleusine coracana)
    • Panwar P, Jha AK, Pandey PK, Gupta Arun K, Kumar Anil (2011) Functional markers based molecular characterization and cloning of resistance gene analogs encoding NBS-LRR disease resistance proteins in finger millet (Eleusine coracana). Mol Biol Rep 38:3427-3436
    • (2011) Mol Biol Rep , vol.38 , pp. 3427-3436
    • Panwar, P.1    Jha, A.K.2    Pandey, P.K.3    Gupta Arun, K.4    Kumar, A.5
  • 35
    • 79952102399 scopus 로고    scopus 로고
    • Characterization of disease resistance gene homologues isolated from finger millet (Eleusine coracana L. Gaertn)
    • Reddy BL, Srinivas Reddy D, Lakshmi Narasu M, Sivaramakrishnan S (2011) Characterization of disease resistance gene homologues isolated from finger millet (Eleusine coracana L. Gaertn). Mol Breed 27(3):315-328
    • (2011) Mol Breed , vol.27 , Issue.3 , pp. 315-328
    • Reddy, B.L.1    Srinivas Reddy, D.2    Lakshmi Narasu, M.3    Sivaramakrishnan, S.4
  • 36
    • 0028279385 scopus 로고
    • The function and consensus motifs of nine types of peptide segments that form different types of nucleotide binding sites
    • Traut TW (1994) The function and consensus motifs of nine types of peptide segments that form different types of nucleotide binding sites. Eur J Biochem 222:9-19
    • (1994) Eur J Biochem , vol.222 , pp. 9-19
    • Traut, T.W.1
  • 37
    • 0001475812 scopus 로고    scopus 로고
    • The hypersensitive response and the induction of cell death in plants
    • Morel JB, Dangl JL (1997) The hypersensitive response and the induction of cell death in plants. Cell Death Differ 4:671-683
    • (1997) Cell Death Differ , vol.4 , pp. 671-683
    • Morel, J.B.1    Dangl, J.L.2
  • 38
    • 0343352530 scopus 로고    scopus 로고
    • Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes
    • Pan Q, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50:203-213 (Pubitemid 30429973)
    • (2000) Journal of Molecular Evolution , vol.50 , Issue.3 , pp. 203-213
    • Pan, Q.1    Wendel, J.2    Fluhr, R.3
  • 39
    • 0034886836 scopus 로고    scopus 로고
    • Diversity and evolution of a non-TIR-NBS sequence family that clusters to a chromosomal "hotspot" for disease resistance genes in soybean
    • DOI 10.1007/s001220100567
    • Jeong SC, Hayes AJ, Biyashev RM, Saghai Maroof MA (2001) Diversity and evolution of a non-TIR-NBS sequence family that clusters to a chromosomal 'hotspot' for disease resistance genes in soybean. Theor Appl Genet 103:406-414 (Pubitemid 32770194)
    • (2001) Theoretical and Applied Genetics , vol.103 , Issue.2-3 , pp. 406-414
    • Jeong, S.C.1    Hayes, A.J.2    Biyashev, R.M.3    Maroof, M.A.S.4
  • 40
    • 0036934756 scopus 로고    scopus 로고
    • Targeted isolation, sequence analysis, and physical mapping of nonTIR NBS-LRR genes in soybean
    • DOI 10.1007/s00122-001-0785-0
    • Penuela S, Danesh D, Young ND (2002) Targeted isolation, sequence analysis, and physical mapping of non-TIR NBSLRR genes in soybean. Theor Appl Genet 104:261-272 (Pubitemid 36065053)
    • (2002) Theoretical and Applied Genetics , vol.104 , Issue.2-3 , pp. 261-272
    • Penuela, S.1    Danesh, D.2    Young, N.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.