-
1
-
-
0345071423
-
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
-
Adams, K. L., R. Cronn, R. Percifield, and J. F. Wendel, 2003 Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100(8): 4649-4654.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.8
, pp. 4649-4654
-
-
Adams, K.L.1
Cronn, R.2
Percifield, R.3
Wendel, J.F.4
-
2
-
-
11244349782
-
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid
-
Adams, K. L., R. Percifield, and J. F. Wendel, 2004 Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics 168(4): 2217-2226.
-
(2004)
Genetics
, vol.168
, Issue.4
, pp. 2217-2226
-
-
Adams, K.L.1
Percifield, R.2
Wendel, J.F.3
-
4
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
Aury, J. M., O. Jaillon, L. Duret, B. Noel, C. Jubin et al., 2006 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444(7116): 171-178.
-
(2006)
Nature
, vol.444
, Issue.7116
, pp. 171-178
-
-
Aury, J.M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
-
5
-
-
0030791317
-
The hotspot conversion paradox and the evolution of meiotic recombination
-
Boulton, A., R. S. Myers, and R. J. Redfield, 1997 The hotspot conversion paradox and the evolution of meiotic recombination. Proc. Natl. Acad. Sci. USA 94: 8058-8063.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8058-8063
-
-
Boulton, A.1
Myers, R.S.2
Redfield, R.J.3
-
6
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers, J. E., B. A. Chapman, J. Rong, and A. H. Paterson, 2003 Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422 (6930): 433-438.
-
(2003)
Nature
, vol.422
, Issue.6930
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
7
-
-
24344491236
-
Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses
-
Bowers, J. E., M. A. Arias, R. Asher, J. A. Avise, R. T. Ball et al., 2005 Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proc. Natl. Acad. Sci. USA 102(37): 13206-13211.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, Issue.37
, pp. 13206-13211
-
-
Bowers, J.E.1
Arias, M.A.2
Asher, R.3
Avise, J.A.4
Ball, R.T.5
-
8
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
Brennecke, J., C. D. Malone, A. A. Aravin, R. Sachidanandam, A. Stark et al., 2008 An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322(5906): 1387-1392.
-
(2008)
Science
, vol.322
, Issue.5906
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
-
9
-
-
79955544603
-
Genetic improvement of the Pee Dee cotton germplasm collection following seventy years of plant breeding
-
Campbell, B., P. W. Chee, E. Lubbers, D. T. Bowman, W. R. Meredith et al., 2011 Genetic improvement of the Pee Dee cotton germplasm collection following seventy years of plant breeding. Crop Sci. 51: 955-968.
-
(2011)
Crop Sci.
, vol.51
, pp. 955-968
-
-
Campbell, B.1
Chee, P.W.2
Lubbers, E.3
Bowman, D.T.4
Meredith, W.R.5
-
10
-
-
33644499450
-
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
-
Chapman, B. A., J. E. Bowers, F. A. Feltus, and A. H. Paterson, 2006 Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc. Natl. Acad. Sci. USA 103(8): 2730-2735.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.8
, pp. 2730-2735
-
-
Chapman, B.A.1
Bowers, J.E.2
Feltus, F.A.3
Paterson, A.H.4
-
11
-
-
34548743476
-
Gene conversion: Mechanisms, evolution and human disease
-
Chen, J. M., D. N. Cooper, N. Chuzhanova, C. Ferec, and G. P. Patrinos, 2007 Gene conversion: mechanisms, evolution and human disease. Nat. Rev. Genet. 8(10): 762-775.
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.10
, pp. 762-775
-
-
Chen, J.M.1
Cooper, D.N.2
Chuzhanova, N.3
Ferec, C.4
Patrinos, G.P.5
-
12
-
-
0030799238
-
Epigenetic silencing of RNA polymerase I transcription: A role for DNA methylation and histone modification in nucleolar dominance
-
Chen, Z. J., and C. S. Pikaard, 1997a Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. Genes Dev. 11(16): 2124-2136.
-
(1997)
Genes Dev.
, vol.11
, Issue.16
, pp. 2124-2136
-
-
Chen, Z.J.1
Pikaard, C.S.2
-
13
-
-
0030980947
-
Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/ silencing of progenitor rRNA genes is developmentally regulated in Brassica
-
Chen, Z. J., and C. S. Pikaard, 1997b Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/ silencing of progenitor rRNA genes is developmentally regulated in Brassica. Proc. Natl. Acad. Sci. USA 94(7): 3442-3447.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, Issue.7
, pp. 3442-3447
-
-
Chen, Z.J.1
Pikaard, C.S.2
-
14
-
-
84856390205
-
Extensive chromosomal variation generated in a recently formed polyploid species, Tragopogon miscellus (Asteraceae)
-
Chester, M., J. P. Gallagher, V. V. Symonds, A. Veruska Cruz da Silva, E. V. Mavrodiev et al., 2012 Extensive chromosomal variation generated in a recently formed polyploid species, Tragopogon miscellus (Asteraceae). Proc. Natl. Acad. Sci. USA 109: 1176-1181.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 1176-1181
-
-
Chester, M.1
Gallagher, J.P.2
Symonds, V.V.3
Veruska Cruz da Silva, A.4
Mavrodiev, E.V.5
-
15
-
-
2442707716
-
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of rayfinned fishes
-
Christoffels, A., E. G. L. Koh, J. M. Chia, S. Brenner, S. Aparicio et al., 2004 Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of rayfinned fishes. Mol. Biol. Evol. 21(6): 1146-1151.
-
(2004)
Mol. Biol. Evol.
, vol.21
, Issue.6
, pp. 1146-1151
-
-
Christoffels, A.1
Koh, E.G.L.2
Chia, J.M.3
Brenner, S.4
Aparicio, S.5
-
16
-
-
79957577720
-
Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection
-
Cohen, N. M., E. Kenigsberg, and A. Tanay, 2011 Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection. Cell 145(5): 773-786.
-
(2011)
Cell
, vol.145
, Issue.5
, pp. 773-786
-
-
Cohen, N.M.1
Kenigsberg, E.2
Tanay, A.3
-
17
-
-
0030595362
-
Interchromosomal transfer of epigenetic states in Ascobolus: Transfer of DNA methylation is mechanistically related to homologous recombination
-
Colot, V., L. Maloisel, and J. L. Rossignol, 1996 Interchromosomal transfer of epigenetic states in Ascobolus: transfer of DNA methylation is mechanistically related to homologous recombination. Cell 86(6): 855-864.
-
(1996)
Cell
, vol.86
, Issue.6
, pp. 855-864
-
-
Colot, V.1
Maloisel, L.2
Rossignol, J.L.3
-
18
-
-
33644681986
-
The advantages and disadvantages of being polyploid
-
Comai, L., 2005 The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6(11): 836-846.
-
(2005)
Nat. Rev. Genet.
, vol.6
, Issue.11
, pp. 836-846
-
-
Comai, L.1
-
19
-
-
0033789617
-
Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids
-
Comai, L., A. P. Tyagi, K. Winter, R. Holmes-Davis, S. H. Reynolds et al., 2000 Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids. Plant Cell 12(9): 1551-1568.
-
(2000)
Plant Cell
, vol.12
, Issue.9
, pp. 1551-1568
-
-
Comai, L.1
Tyagi, A.P.2
Winter, K.3
Holmes-Davis, R.4
Reynolds, S.H.5
-
20
-
-
0036239573
-
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes
-
Cronn, R. C., R. L. Small, T. Haselkorn, and J. F. Wendel, 2002 Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. Am. J. Bot. 89(4): 707-725.
-
(2002)
Am. J. Bot.
, vol.89
, Issue.4
, pp. 707-725
-
-
Cronn, R.C.1
Small, R.L.2
Haselkorn, T.3
Wendel, J.F.4
-
21
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret, L., and N. Galtier, 2009 Biased gene conversion and the evolution of mammalian genomic landscapes. Annu. Rev. Genomics Hum. Genet. 10: 285-311.
-
(2009)
Annu. Rev. Genomics Hum. Genet.
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
22
-
-
34247899003
-
Finely orchestrated movements: Evolution of the ribosomal RNA genes
-
Eickbush, T. H., and D. G. Eickbush, 2007 Finely orchestrated movements: evolution of the ribosomal RNA genes. Genetics 175(2): 477-485.
-
(2007)
Genetics
, vol.175
, Issue.2
, pp. 477-485
-
-
Eickbush, T.H.1
Eickbush, D.G.2
-
23
-
-
65249143921
-
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
-
Fawcett, J. A., S. Maere, and Y. Van de Peer, 2009 Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc. Natl. Acad. Sci. USA 106: 5737-5742.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5737-5742
-
-
Fawcett, J.A.1
Maere, S.2
Van de Peer, Y.3
-
24
-
-
0030671532
-
Rapid elimination of low-copy DNA sequences in polyploid wheat: A possible mechanism for differentiation of homoeologous chromosomes
-
Feldman, M., B. Liu, G. Segal, S. Abbo, A. A. Levy et al., 1997 Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147(3): 1381-1387.
-
(1997)
Genetics
, vol.147
, Issue.3
, pp. 1381-1387
-
-
Feldman, M.1
Liu, B.2
Segal, G.3
Abbo, S.4
Levy, A.A.5
-
25
-
-
23844468088
-
Hybrid genome evolution by transposition
-
Fontdevila, A., 2005 Hybrid genome evolution by transposition. Cytogenet. Genome Res. 110(1-4): 49-55.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, Issue.1-4
, pp. 49-55
-
-
Fontdevila, A.1
-
26
-
-
33745610025
-
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
-
Freeling, M., and B. C. Thomas, 2006 Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. 16(7): 805-814.
-
(2006)
Genome Res.
, vol.16
, Issue.7
, pp. 805-814
-
-
Freeling, M.1
Thomas, B.C.2
-
27
-
-
33645068168
-
The human LINE-1 retrotransposon creates DNA double-strand breaks
-
Gasior, S. J., T. P. Wakeman, B. Xu, and P. L. Deininger, 2006 The human LINE-1 retrotransposon creates DNA double-strand breaks. J. Mol. Biol. 357(5): 1383-1393.
-
(2006)
J. Mol. Biol.
, vol.357
, Issue.5
, pp. 1383-1393
-
-
Gasior, S.J.1
Wakeman, T.P.2
Xu, B.3
Deininger, P.L.4
-
28
-
-
0004042690
-
-
Ed. 1. Columbia University Press, New York
-
Grant, V., 1971 Plant Speciation, Ed. 1. Columbia University Press, New York.
-
(1971)
Plant Speciation
-
-
Grant, V.1
-
29
-
-
84857730786
-
Trans chromosomal methylation in Arabidopsis hybrids
-
Greaves, I. K., M. Groszmann, H. Ying, J. M. Taylor, W. J. Peacock et al., 2011 Trans chromosomal methylation in Arabidopsis hybrids. Proc. Natl. Acad. Sci. USA 109(9): 3570-3575.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.109
, Issue.9
, pp. 3570-3575
-
-
Greaves, I.K.1
Groszmann, M.2
Ying, H.3
Taylor, J.M.4
Peacock, W.J.5
-
30
-
-
32544454998
-
Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat
-
Griffiths, S., R. Sharp, T. N. Foote, I. Bertin, M. Wanous et al., 2006 Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat. Nature 439: 749-752.
-
(2006)
Nature
, vol.439
, pp. 749-752
-
-
Griffiths, S.1
Sharp, R.2
Foote, T.N.3
Bertin, I.4
Wanous, M.5
-
31
-
-
79952301195
-
Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
-
Groszmann, M., I. K. Greaves, Z. I. Albertyn, and G. N. Scofield, W. J. Peacock et al., 2011 Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc. Natl. Acad. Sci. USA 108(6): 2617-2622.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.6
, pp. 2617-2622
-
-
Groszmann, M.1
Greaves, I.K.2
Albertyn, Z.I.3
Scofield, G.N.4
Peacock, W.J.5
-
32
-
-
0347033256
-
Role of duplicate genes in genetic robustness against null mutations
-
Gu, Z. L., L. M. Steinmetz, X. Gu, C. Scharfe, R. W. Davis et al., 2003 Role of duplicate genes in genetic robustness against null mutations. Nature 421(6918): 63-66.
-
(2003)
Nature
, vol.421
, Issue.6918
, pp. 63-66
-
-
Gu, Z.L.1
Steinmetz, L.M.2
Gu, X.3
Scharfe, C.4
Davis, R.W.5
-
33
-
-
84878442409
-
Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants
-
Guo, H., T. H. Lee, X. Wang, and A. H. Paterson, 2013 Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants. Plant Physiol. 162: 769-778.
-
(2013)
Plant Physiol.
, vol.162
, pp. 769-778
-
-
Guo, H.1
Lee, T.H.2
Wang, X.3
Paterson, A.H.4
-
34
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
He, X. L., and J. Z. Zhang, 2005 Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169(2): 1157-1164.
-
(2005)
Genetics
, vol.169
, Issue.2
, pp. 1157-1164
-
-
He, X.L.1
Zhang, J.Z.2
-
35
-
-
34249945536
-
DNA double-strand break repair: From mechanistic understanding to cancer treatment
-
Helleday, T., J. Lo, D. C. van Gent, and B. P. Engelward, 2007 DNA double-strand break repair: from mechanistic understanding to cancer treatment. DNA Repair (Amst.) 6(7): 923-935.
-
(2007)
DNA Repair (Amst.)
, vol.6
, Issue.7
, pp. 923-935
-
-
Helleday, T.1
Lo, J.2
van Gent, D.C.3
Engelward, B.P.4
-
36
-
-
0032516002
-
Polyploid formation created unique avenues for response to selection in Gossypium (cotton)
-
Jiang, C., and R. J. Wright, K. M. El-Zik, and A. H. Paterson, 1998 Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc. Natl. Acad. Sci. USA 95(8): 4419-4424.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, Issue.8
, pp. 4419-4424
-
-
Jiang, C.1
Wright, R.J.2
El-Zik, K.M.3
Paterson, A.H.4
-
37
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y., N. J. Wickett, S. Ayyampalayam, A. S. Chanderbali, L. Landherr et al., 2011 Ancestral polyploidy in seed plants and angiosperms. Nature 473(7345): 97-100.
-
(2011)
Nature
, vol.473
, Issue.7345
, pp. 97-100
-
-
Jiao, Y.1
Wickett, N.J.2
Ayyampalayam, S.3
Chanderbali, A.S.4
Landherr, L.5
-
38
-
-
0036241339
-
Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
-
Kashkush, K., M. Feldman, and A. A. Levy, 2002 Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160(4): 1651-1659.
-
(2002)
Genetics
, vol.160
, Issue.4
, pp. 1651-1659
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
39
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
Kashkush, K., M. Feldman, and A. A. Levy, 2003 Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33(1): 102-106.
-
(2003)
Nat. Genet.
, vol.33
, Issue.1
, pp. 102-106
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
40
-
-
36949071716
-
Basis of the Diploid-like meiotic behaviour of polyploid cotton
-
Kimber, G., 1961 Basis of the Diploid-like meiotic behaviour of polyploid cotton. Nature 191: 98-99.
-
(1961)
Nature
, vol.191
, pp. 98-99
-
-
Kimber, G.1
-
41
-
-
0035810998
-
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
-
Lee, H. S., and Z. J. Chen, 2001 Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc. Natl. Acad. Sci. USA 98(12): 6753-6758.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, Issue.12
, pp. 6753-6758
-
-
Lee, H.S.1
Chen, Z.J.2
-
42
-
-
80054915847
-
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
-
Li, H., 2011 A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27(21): 2987-2993.
-
(2011)
Bioinformatics
, vol.27
, Issue.21
, pp. 2987-2993
-
-
Li, H.1
-
43
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and R. Durbin, 2009 Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14): 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
44
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., B. Handsaker, A. Wysoker, T. Fennell, J. Ruan et al., 2009 The sequence alignment/map format and SAMtools. Bioinformatics 25(16): 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
45
-
-
0002884170
-
The geobotanical significance of polyploidy
-
Love, A., and D. Love, 1949 The geobotanical significance of polyploidy. Portugaliae Acta (Suppl): 273-352.
-
(1949)
Portugaliae Acta
, Issue.SUPPL.
, pp. 273-352
-
-
Love, A.1
Love, D.2
-
46
-
-
84863229351
-
Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis
-
Lu, P., X. Han, J. Qi, J. Yang, J. Wijeratne Asela et al., 2012 Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis. Genome Res. 22: 508-518.
-
(2012)
Genome Res.
, vol.22
, pp. 508-518
-
-
Lu, P.1
Han, X.2
Qi, J.3
Yang, J.4
Wijeratne Asela, J.5
-
47
-
-
30744475434
-
The origins of eukaryotic gene structure
-
Lynch, M., 2006 The origins of eukaryotic gene structure. Mol. Biol. Evol. 23(2): 450-468.
-
(2006)
Mol. Biol. Evol.
, vol.23
, Issue.2
, pp. 450-468
-
-
Lynch, M.1
-
48
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and J. S. Conery, 2000 The evolutionary fate and consequences of duplicate genes. Science 290(5494): 1151-1155.
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
49
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch, M., and A. Force, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154(1): 459-473.
-
(2000)
Genetics
, vol.154
, Issue.1
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
50
-
-
0035697435
-
The probability of preservation of a newly arisen gene duplicate
-
Lynch, M., M. O'Hely, B. Walsh, and A. Force, 2001 The probability of preservation of a newly arisen gene duplicate. Genetics 159(4): 1789-1804.
-
(2001)
Genetics
, vol.159
, Issue.4
, pp. 1789-1804
-
-
Lynch, M.1
O'Hely, M.2
Walsh, B.3
Force, A.4
-
51
-
-
84872597340
-
Polyploidy and its effect on evolutionary success: Old questions revisited with new tools
-
Madlung, A., 2013 Polyploidy and its effect on evolutionary success: old questions revisited with new tools. Heredity 110: 99-104.
-
(2013)
Heredity
, vol.110
, pp. 99-104
-
-
Madlung, A.1
-
52
-
-
84905657994
-
The significance of responses of the genome to challenge
-
Johns Hopkins University Press, Baltimore
-
McClintock, B., 1983 The significance of responses of the genome to challenge. Essential Readings in Evolutionary Biology. Johns Hopkins University Press, Baltimore.
-
(1983)
Essential Readings in Evolutionary Biology
-
-
McClintock, B.1
-
53
-
-
84982072268
-
The evolutionary significance of autopolyploidy
-
Muntzing, A., 1936 The evolutionary significance of autopolyploidy. Hereditas 21: 363-378.
-
(1936)
Hereditas
, vol.21
, pp. 363-378
-
-
Muntzing, A.1
-
54
-
-
0009673698
-
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid
-
O'Neill, R. J., M. J. O'Neill, and J. A. Graves, 2002 Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393(6680): 68-72.
-
(2002)
Nature
, vol.393
, Issue.6680
, pp. 68-72
-
-
O'Neill, R.J.1
O'Neill, M.J.2
Graves, J.A.3
-
56
-
-
0034860131
-
Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group
-
Ozkan, H., A. A. Levy, and M. Feldman, 2001 Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13(8): 1735-1747.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1735-1747
-
-
Ozkan, H.1
Levy, A.A.2
Feldman, M.3
-
57
-
-
0036965401
-
Rapid differentiation of homeologous chromosomes in newly-formed allopolyploid wheat
-
Ozkan, H., A. A. Levy, and M. Feldman, 2002 Rapid differentiation of homeologous chromosomes in newly-formed allopolyploid wheat. Isr. J. Plant Sci. 50: S65-S76.
-
(2002)
Isr. J. Plant Sci.
, vol.50
-
-
Ozkan, H.1
Levy, A.A.2
Feldman, M.3
-
58
-
-
58449137410
-
The sorghum bicolor genome and the diversification of grasses
-
Paterson, A. H., J. E. Bowers, R. Bruggmann, I. Dubchak, J. Grimwood et al., 2009 The sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
-
59
-
-
77952476959
-
Insights from the comparison of plant genome sequences
-
Paterson, A. H., M. Freeling, H. Tang, and X. Wang, 2010 Insights from the comparison of plant genome sequences. Annu. Rev. Plant Biol. 61: 349-372.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 349-372
-
-
Paterson, A.H.1
Freeling, M.2
Tang, H.3
Wang, X.4
-
60
-
-
84871428041
-
Repeated polyploidization of Gossypium and the evolution of spinnable cotton fibers
-
Paterson, A. H., J. F. Wendel, H. Gundlach, H. Guo, J. Jenkins et al., 2012 Repeated polyploidization of Gossypium and the evolution of spinnable cotton fibers. Nature 492: 423-427.
-
(2012)
Nature
, vol.492
, pp. 423-427
-
-
Paterson, A.H.1
Wendel, J.F.2
Gundlach, H.3
Guo, H.4
Jenkins, J.5
-
61
-
-
0346091243
-
Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae)
-
Pires, J. C., J. W. Zhao, M. E. Schranz, E. J. Leon, P. A. Quijada et al., 2004 Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae). Biol. J. Linn. Soc. Lond. 82(4): 675-688.
-
(2004)
Biol. J. Linn. Soc. Lond.
, vol.82
, Issue.4
, pp. 675-688
-
-
Pires, J.C.1
Zhao, J.W.2
Schranz, M.E.3
Leon, E.J.4
Quijada, P.A.5
-
62
-
-
10344248200
-
Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives
-
Rana, D., T. Boogaart, C. M. O'Neill, L. Hynes, E. Bent et al., 2004 Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives. Plant J. 40(5): 725-733.
-
(2004)
Plant J.
, vol.40
, Issue.5
, pp. 725-733
-
-
Rana, D.1
Boogaart, T.2
O'Neill, C.M.3
Hynes, L.4
Bent, E.5
-
63
-
-
12144290265
-
A 3347-locus genetic recombination map of sequencetagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium)
-
Rong, J., C. Abbey, J. E. Bowers, C. L. Brubaker, C. Chang et al., 2004 A 3347-locus genetic recombination map of sequencetagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics 166(1): 389-417.
-
(2004)
Genetics
, vol.166
, Issue.1
, pp. 389-417
-
-
Rong, J.1
Abbey, C.2
Bowers, J.E.3
Brubaker, C.L.4
Chang, C.5
-
64
-
-
84859945133
-
Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types
-
Rong, J., X. Wang, S. R. Schulze, R. O. Compton, T. D. Williams-Coplin et al., 2012 Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types. Heredity (Edinb) 108(5): 500-506.
-
(2012)
Heredity (Edinb)
, vol.108
, Issue.5
, pp. 500-506
-
-
Rong, J.1
Wang, X.2
Schulze, S.R.3
Compton, R.O.4
Williams-Coplin, T.D.5
-
65
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
Scannell, D. R., K. P. Byrne, J. L. Gordon, S. Wong, and K. H. Wolfe, 2006 Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440(7082): 341-345.
-
(2006)
Nature
, vol.440
, Issue.7082
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
66
-
-
0037388971
-
Rate variation among nuclear genes and the age of polyploidy in Gossypium
-
Senchina, D. S., I. Alvarez, R. C. Cronn, B. Liu, J. K. Rong et al., 2003 Rate variation among nuclear genes and the age of polyploidy in Gossypium. Mol. Biol. Evol. 20(4): 633-643.
-
(2003)
Mol. Biol. Evol.
, vol.20
, Issue.4
, pp. 633-643
-
-
Senchina, D.S.1
Alvarez, I.2
Cronn, R.C.3
Liu, B.4
Rong, J.K.5
-
67
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
Shaked, H., K. Kashkush, H. Ozkan, M. Feldman, and A. A. Levy, 2001 Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13(8): 1749-1759.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1749-1759
-
-
Shaked, H.1
Kashkush, K.2
Ozkan, H.3
Feldman, M.4
Levy, A.A.5
-
68
-
-
0032862870
-
Primate evolution of an olfactory receptor cluster: Diversification by gene conversion and recent emergence of pseudogenes
-
Sharon, D., G. Glusman, Y. Pilpel, M. Khen, F. Gruetzner et al., 1999 Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes. Genomics 61(1): 24-36.
-
(1999)
Genomics
, vol.61
, Issue.1
, pp. 24-36
-
-
Sharon, D.1
Glusman, G.2
Pilpel, Y.3
Khen, M.4
Gruetzner, F.5
-
69
-
-
77950579006
-
Widespread gene conversion in centromere cores
-
Shi, J., S. E. Wolf, J. M. Burke, G. G. Presting, J. Ross-lbarra et al., 2010 Widespread gene conversion in centromere cores. PLoS Biol. 8(3): e1000327.
-
(2010)
PLoS Biol.
, vol.8
, Issue.3
-
-
Shi, J.1
Wolf, S.E.2
Burke, J.M.3
Presting, G.G.4
Ross-lbarra, J.5
-
70
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin, R. K., and R. Martienssen, 2007 Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8: 272-285.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
71
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin, R. K., M. Vaughn, F. Borges, M. Tanurdzic, J. D. Becker et al., 2009 Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
-
72
-
-
0029162810
-
Rapid genome change in Synthetic polyploids of Brassica and its implications for polyploid evolution
-
Song, K. M., P. Lu, K. L. Tang, and T. C. Osborn, 1995 Rapid genome change in Synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. USA 92 (17): 7719-7723.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, Issue.17
, pp. 7719-7723
-
-
Song, K.M.1
Lu, P.2
Tang, K.L.3
Osborn, T.C.4
-
74
-
-
0000032326
-
Possible significance of duplications in evolution
-
Stephens, S., 1951 Possible significance of duplications in evolution. Adv. Genet. 4: 247-265.
-
(1951)
Adv. Genet.
, vol.4
, pp. 247-265
-
-
Stephens, S.1
-
75
-
-
71049166867
-
Sampling nucleotide diversity in cotton
-
Van Deynze, A., K. Stoffel, M. Lee, T. A. Wilkins, A. Kozik et al., 2009 Sampling nucleotide diversity in cotton. BMC Plant Biol. 9: 125.
-
(2009)
BMC Plant Biol.
, vol.9
, pp. 125
-
-
Van Deynze, A.1
Stoffel, K.2
Lee, M.3
Wilkins, T.A.4
Kozik, A.5
-
76
-
-
0035289717
-
Chromosomal stability and the DNA double-stranded break connection
-
Van Gent, D. C., J. H. J. Hoeijmakers, and R. Kanaar, 2001 Chromosomal stability and the DNA double-stranded break connection. Nat. Rev. Genet. 2(3): 196-206.
-
(2001)
Nat. Rev. Genet.
, vol.2
, Issue.3
, pp. 196-206
-
-
Van Gent, D.C.1
Hoeijmakers, J.H.J.2
Kanaar, R.3
-
77
-
-
37249045857
-
Extensive concerted evolution of rice paralogs and the road to regaining independence
-
Wang, X., H. Tang, J. E. Bowers, F. A. Feltus, and A. H. Paterson, 2007 Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics 177(3): 1753-1763.
-
(2007)
Genetics
, vol.177
, Issue.3
, pp. 1753-1763
-
-
Wang, X.1
Tang, H.2
Bowers, J.E.3
Feltus, F.A.4
Paterson, A.H.5
-
78
-
-
66449122207
-
Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization
-
Wang, X., H. Tang, J. E. Bowers, and A. H. Paterson, 2009 Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization. Genome Res. 19(6): 1026-1032.
-
(2009)
Genome Res.
, vol.19
, Issue.6
, pp. 1026-1032
-
-
Wang, X.1
Tang, H.2
Bowers, J.E.3
Paterson, A.H.4
-
79
-
-
0001632947
-
New World tetraploid cottons contain oldworld cytoplasm
-
Wendel, J. F., 1989 New World tetraploid cottons contain oldworld cytoplasm. Proc. Natl. Acad. Sci. USA 86(11): 4132-4136.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, Issue.11
, pp. 4132-4136
-
-
Wendel, J.F.1
-
80
-
-
84890509001
-
The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana
-
Wijnker, E., G. V. James, J. Ding, F. Becker, J. R. Klasen et al., 2013 The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. eLife 2: e01426.
-
(2013)
eLife
, vol.2
-
-
Wijnker, E.1
James, G.V.2
Ding, J.3
Becker, F.4
Klasen, J.R.5
-
81
-
-
79956351636
-
Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus
-
Xiong, Z., R. T. Gaeta, and J. C. Pires, 2011 Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Proc. Natl. Acad. Sci. USA 108: 7908-7913.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7908-7913
-
-
Xiong, Z.1
Gaeta, R.T.2
Pires, J.C.3
-
82
-
-
84871335427
-
Great majority of recombination events in Arabidopsis are gene conversion events
-
Yang, S., Y. Yuan, L. Wang, J. Li, W. Wang et al., 2012 Great majority of recombination events in Arabidopsis are gene conversion events. Proc. Natl. Acad. Sci. USA 109(51): 20992-20997.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, Issue.51
, pp. 20992-20997
-
-
Yang, S.1
Yuan, Y.2
Wang, L.3
Li, J.4
Wang, W.5
-
83
-
-
0031832808
-
Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton
-
Zhao, X. P., Y. Si, R. E. Hanson, C. F. Crane, H. J. Price et al., 1998 Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res. 8(5): 479-492.
-
(1998)
Genome Res.
, vol.8
, Issue.5
, pp. 479-492
-
-
Zhao, X.P.1
Si, Y.2
Hanson, R.E.3
Crane, C.F.4
Price, H.J.5
|