A novel thermostable polymerase for RNA and DNA loop-mediated isothermal amplification (LAMP)

Frontiers in Microbiology

Volumn 5, Issue AUG, 2014, Pages

  Chander, Yogesh ^a   Koelbl, Jim ^a   Puckett, Jamie ^a   Moser, Michael J ^a   Klingele, Audrey J ^a   Liles, Mark R ^b   Carrias, Abel ^b   Mead, David A ^a   Schoenfeld, Thomas W ^a  

^a LUCIGEN CORPORATION   (United States)

^b AUBURN UNIVERSITY   (United States)

Author keywords

Diagnostics; Infectious diseases; Point of care; RNA DNA polymerase; RT LAMP

Indexed keywords

EID: 84905669367     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00395     Document Type: Article

References (24)

1. Deng, R., and Brock, V. (1993). 5' and 3' untranslated regions of pestivirus genome: primary and secondary structure analysis. Nucleic Acid Res. 21, 1949-1957. doi: 10.1093/nar/21.8.1949
2. Fu, S., Qu, G., Guo, S., Ma, L., Zhang, N., Zhang, S., et al. (2011). Applications of loop-mediated isothermal DNA amplification. Appl. Biochem. Biotechnol. 163, 845-850. doi: 10.1007/s12010-010-9088-8
3. Ge, Y., Wu, B., Qi, X., Zhao, K., Guo, X., Zhu, Y., et al. (2013). Rapid and sensitive detection of novel avian-origin influenza A (H7N9) virus by reverse transcription loop-mediated isothermal amplification combined with a lateral-flow device. PLoS ONE 8:e69941. doi: 10.1371/journal.pone.0069941
4. Goto, M., Honda, E., Ogura, A., Nomoto, A., and Hanaki, K. I. (2009). Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46, 167-172. doi: 10.2144/000113072
5. Hernandez, L. O., Negussie, H., Mazzola, L. T., Laser, D. J., and Droitcour, A. (2011). Integrated heaters for temperature control in disposable bioassay cartridges for use with portable, battery-operated instruments. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2011, 326-332. doi: 10.1109/IEMBS.2011.6090085
6. Huang, W. H., Zhai, F., and Hong, G. F. (1999). Cloning, expression, characterization and application of Bst DNA polymerase large fragment. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 31, 379-384.
7. Mabey, D., Peeling, R. W., Ustianowski, A., and Perkins, M. D. (2004). Diagnostics for the developing world. Nat. Rev. Microbiol. 2, 231-240. doi: 10.1038/nrmicro841
8. Mori, Y., Kanda, H., and Notomi, T. (2013). Loop-mediated isothermal amplification (LAMP): recent progress in research and development. J. Infect. Chemother. 19, 404-411. doi: 10.1007/s10156-013-0590-0
9. Mori, Y., and Notomi, T. (2009). Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J. Infect. Chemother. 15, 62-69. doi: 10.1007/s10156-009-0669-9
10. Moser, M. J., Difrancesco, R. A., Gowda, K., Klingele, A. J., Sugar, D. R., Stocki, S., et al. (2012). Thermostable DNA polymerase from a viral metagenome is a potent rt-PCR enzyme. PLoS ONE 7:e38371. doi: 10.1371/journal.pone.0038371
11. Myers, F. B., Henrikson, R. H., Bone, J., and Lee, L. P. (2013). A handheld point-of-care genomic diagnostic system. PLoS ONE 8:e70266. doi: 10.1371/journal.pone.0070266
12. Nagamine, K., Hase, T., and Notomi, T. (2002). Acceterated reaction loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 16, 223-239. doi: 10.1006/mcpr.2002.0415
13. Nijru, Z. K. (2012). Loop-mediated isothermal amplification technology: towards point of care diagnostics. PLoS Negl. Trop. Dis. 6:e1572. doi: 10.1371/journal.pntd.0001572
14. Njiru, Z. K. (2011). Rapid and sensitive detection of human African trypanosomiasis by loop-mediated isothermal amplification combined with a lateral-flow dipstick. Diagn. Microbiol. Infect. Dis. 69, 205-209. doi: 10.1016/j.diagmicrobio.2010.08.026
15. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N., et al. (2000). Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:E63. doi: 10.1093/nar/28.12.e63
16. Parida, M., Sannarangaiah, S., Dash, P. K., Rao, P. V., and Morita, K. (2008). Loop mediated isthermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev. Med. Virol. 18, 407-421. doi: 10.1002/rmv.593
17. Roskos, K., Hickerson, A. I., Lu, H. W., Ferguson, T. M., Shinde, D. N., Klaue, Y., et al. (2013). Simple system for isothermal DNA amplification coupled to lateral flow detection. PLoS ONE 8:e69355. doi: 10.1371/journal.pone.0069355
18. Schoenfeld, T., Patterson, M., Richardson, P. M., Wommack, K. E., Young, M., and Mead, D. (2008). Assembly of viral metagenomes from yellowstone hot springs. Appl. Environ. Microbiol. 74, 4164-4174. doi: 10.1128/AEM.02598-07
19. Segawa, T., Kobayashi, Y., Sase, Y., Itou, T., Suzuki, M., Endoh, T., et al. (2014). Easy-to-use rapid gene amplifciation method for detection of RNA and DNA viruses in sera and feces from various animals. J. Virol. Methods 201, 31-37. doi: 10.1016/j.jviromet.2014.01.019
20. Stedtfeld, R. D., Tourlousse, D. M., Seyrig, G., Stedtfeld, T. M., Kronlein, M., Price, S., et al. (2012). Gene-Z: a device for point of care genetic testing using a smartphone. Lab Chip 12, 1454-1462. doi: 10.1039/c2lc21226a
21. Tanner, N. A., and Evans, T. C. (2014). Loop-mediated isothermal amplification for detection of nucleic acids. Curr. Protoc. Mol. Biol. 105, unit 15.14. doi: 10.1002/0471142727.mb1514s105
22. Tomita, N., Mori, Y., Kanda, H., and Notomi. T. (2008). Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc. 3, 877-882. doi: 10.1038/nprot.2008.57
23. Yamamura, M., Makimura, K., and Ota, Y. (2009). Evaluation of a new rapid molecular diagnostic system for Plasmodium falciparum combined with DNA filter paper, loop-mediated isothermal amplification, and melting curve analysis. Jpn. J. Infect. Dis. 62, 20-25.
24. Zhao, K., Shi, W., Han, F., Xu, Y., Zhu, L., Zou, Y., et al. (2011). Specific, simple and rapid detection of porcine circovirus type 2 using the loop-mediated isothermal amplification method. Virol. J. 8:126. doi: 10.1186/1743-422X-8-126