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Volumn 107, Issue 3, 2014, Pages 588-598

Classification of dynamical diffusion states in single molecule tracking microscopy

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

EID: 84905661569     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2014.05.049     Document Type: Article
Times cited : (31)

References (55)
  • 1
    • 0033804075 scopus 로고    scopus 로고
    • Tracking single proteins within cells
    • M. Goulian, and S.M. Simon Tracking single proteins within cells Biophys. J. 79 2000 2188 2198
    • (2000) Biophys. J. , vol.79 , pp. 2188-2198
    • Goulian, M.1    Simon, S.M.2
  • 2
    • 0033779765 scopus 로고    scopus 로고
    • Single molecule imaging of EGFR signaling on the surface of living cells
    • Y. Sako, S. Minoghchi, and T. Yanagida Single molecule imaging of EGFR signaling on the surface of living cells Nat. Cell Biol. 2 2000 168 172
    • (2000) Nat. Cell Biol. , vol.2 , pp. 168-172
    • Sako, Y.1    Minoghchi, S.2    Yanagida, T.3
  • 3
    • 55649112026 scopus 로고    scopus 로고
    • Tracking single molecules in the live cell plasma membrane - Do's and don't's
    • S. Wieser, and G.J. Schütz Tracking single molecules in the live cell plasma membrane - do's and don't's Methods 46 2008 131 140
    • (2008) Methods , vol.46 , pp. 131-140
    • Wieser, S.1    Schütz, G.J.2
  • 4
    • 48449104310 scopus 로고    scopus 로고
    • Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes
    • A. Sergé, and N. Bertaux D. Marguet Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes Nat. Methods 5 2008 687 694
    • (2008) Nat. Methods , vol.5 , pp. 687-694
    • Sergé, A.1    Bertaux, N.2    Marguet, D.3
  • 5
    • 84864517436 scopus 로고    scopus 로고
    • The tracking of individual molecules in cells and tissues
    • C. Bräuchle, D.C. Lamb, J. Michaelis, Wiley-VCH Verlag Weinheim, Germany
    • L. Holtzer, and T. Schmidt The tracking of individual molecules in cells and tissues C. Bräuchle, D.C. Lamb, J. Michaelis, Single Particle Tracking and Single Molecule Energy Transfer 2010 Wiley-VCH Verlag Weinheim, Germany
    • (2010) Single Particle Tracking and Single Molecule Energy Transfer
    • Holtzer, L.1    Schmidt, T.2
  • 6
    • 80555148149 scopus 로고    scopus 로고
    • ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding
    • S.T. Low-Nam, and K.A. Lidke D.S. Lidke ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding Nat. Struct. Mol. Biol. 18 2011 1244 1249
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1244-1249
    • Low-Nam, S.T.1    Lidke, K.A.2    Lidke, D.S.3
  • 8
    • 80053160633 scopus 로고    scopus 로고
    • Proteins on the move: Insights gained from fluorescent protein technologies
    • A. Miyawaki Proteins on the move: insights gained from fluorescent protein technologies Nat. Rev. Mol. Cell Biol. 12 2011 656 668
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 656-668
    • Miyawaki, A.1
  • 9
    • 33645798851 scopus 로고    scopus 로고
    • The fluorescent toolbox for assessing protein location and function
    • B.N.G. Giepmans, and S.R. Adams R.Y. Tsien The fluorescent toolbox for assessing protein location and function Science 312 2006 217 224
    • (2006) Science , vol.312 , pp. 217-224
    • Giepmans, B.N.G.1    Adams, S.R.2    Tsien, R.Y.3
  • 10
    • 17844364513 scopus 로고    scopus 로고
    • Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: High-speed single molecule tracking of membrane molecules
    • A. Kusumi, and C. Nakada T. Fujiwara Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single molecule tracking of membrane molecules Annu. Rev. Biophys. Biomol. Struct. 34 2005 351 378
    • (2005) Annu. Rev. Biophys. Biomol. Struct. , vol.34 , pp. 351-378
    • Kusumi, A.1    Nakada, C.2    Fujiwara, T.3
  • 11
    • 84856153687 scopus 로고    scopus 로고
    • Nanoscale membrane organization: Where biochemistry meets advanced microscopy
    • A. Cambi, and D.S. Lidke Nanoscale membrane organization: where biochemistry meets advanced microscopy ACS Chem. Biol. 7 2012 139 149
    • (2012) ACS Chem. Biol. , vol.7 , pp. 139-149
    • Cambi, A.1    Lidke, D.S.2
  • 12
    • 0041837560 scopus 로고    scopus 로고
    • Single molecule visualization in cell biology
    • Y. Sako, and T. Yanagida Single molecule visualization in cell biology Nat. Rev. Mol. Cell Biol. 4 Suppl 2003 SS1 SS5
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , Issue.SUPPL.
    • Sako, Y.1    Yanagida, T.2
  • 13
    • 0030956033 scopus 로고    scopus 로고
    • Single particle tracking: Applications to membrane dynamics
    • M.J. Saxton, and K. Jacobson Single particle tracking: applications to membrane dynamics Annu. Rev. Biophys. Biomol. Struct. 26 1997 373 399
    • (1997) Annu. Rev. Biophys. Biomol. Struct. , vol.26 , pp. 373-399
    • Saxton, M.J.1    Jacobson, K.2
  • 14
    • 28444437064 scopus 로고    scopus 로고
    • Membranes are more mosaic than fluid
    • D.M. Engelman Membranes are more mosaic than fluid Nature 438 2005 578 580
    • (2005) Nature , vol.438 , pp. 578-580
    • Engelman, D.M.1
  • 15
    • 33750130964 scopus 로고    scopus 로고
    • Lipid rafts: Now you see them, now you don't
    • A.S. Shaw Lipid rafts: now you see them, now you don't Nat. Immunol. 7 2006 1139 1142
    • (2006) Nat. Immunol. , vol.7 , pp. 1139-1142
    • Shaw, A.S.1
  • 16
    • 33845901815 scopus 로고    scopus 로고
    • Lipid rafts: At a crossroad between cell biology and physics
    • K. Jacobson, O.G. Mouritsen, and R.G.W. Anderson Lipid rafts: at a crossroad between cell biology and physics Nat. Cell Biol. 9 2007 7 14
    • (2007) Nat. Cell Biol. , vol.9 , pp. 7-14
    • Jacobson, K.1    Mouritsen, O.G.2    Anderson, R.G.W.3
  • 17
    • 33745828702 scopus 로고    scopus 로고
    • EGF-ERBB signaling: Towards the systems level
    • A. Citri, and Y. Yarden EGF-ERBB signaling: towards the systems level Nat. Rev. Mol. Cell Biol. 7 2006 505 516
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 505-516
    • Citri, A.1    Yarden, Y.2
  • 18
    • 77953896432 scopus 로고    scopus 로고
    • Cell signaling by receptor tyrosine kinases
    • M.A. Lemmon, and J. Schlessinger Cell signaling by receptor tyrosine kinases Cell 141 2010 1117 1134
    • (2010) Cell , vol.141 , pp. 1117-1134
    • Lemmon, M.A.1    Schlessinger, J.2
  • 20
    • 0039587949 scopus 로고    scopus 로고
    • Single molecule microscopy on model membranes reveals anomalous diffusion
    • G.J. Schütz, H. Schindler, and T. Schmidt Single molecule microscopy on model membranes reveals anomalous diffusion Biophys. J. 73 1997 1073 1080
    • (1997) Biophys. J. , vol.73 , pp. 1073-1080
    • Schütz, G.J.1    Schindler, H.2    Schmidt, T.3
  • 22
    • 0036214457 scopus 로고    scopus 로고
    • Relationship of lipid rafts to transient confinement zones detected by single particle tracking
    • C. Dietrich, and B. Yang K. Jacobson Relationship of lipid rafts to transient confinement zones detected by single particle tracking Biophys. J. 82 2002 274 284
    • (2002) Biophys. J. , vol.82 , pp. 274-284
    • Dietrich, C.1    Yang, B.2    Jacobson, K.3
  • 23
    • 46249095691 scopus 로고    scopus 로고
    • A spatially restricted increase in receptor mobility is involved in directional sensing during Dictyostelium discoideum chemotaxis
    • S. de Keijzer, and A. Sergé B.E. Snaar-Jagalska A spatially restricted increase in receptor mobility is involved in directional sensing during Dictyostelium discoideum chemotaxis J. Cell Sci. 121 2008 1750 1757
    • (2008) J. Cell Sci. , vol.121 , pp. 1750-1757
    • De Keijzer, S.1    Sergé, A.2    Snaar-Jagalska, B.E.3
  • 24
    • 76649135799 scopus 로고    scopus 로고
    • Signaling complexes and clusters: Functional advantages and methodological hurdles
    • M. Cebecauer, and M. Spitaler A.I. Magee Signaling complexes and clusters: functional advantages and methodological hurdles J. Cell Sci. 123 2010 309 320
    • (2010) J. Cell Sci. , vol.123 , pp. 309-320
    • Cebecauer, M.1    Spitaler, M.2    Magee, A.I.3
  • 25
    • 48449092211 scopus 로고    scopus 로고
    • Using plasma membrane nanoclusters to build better signaling circuits
    • A.S. Harding, and J.F. Hancock Using plasma membrane nanoclusters to build better signaling circuits Trends Cell Biol. 18 2008 364 371
    • (2008) Trends Cell Biol. , vol.18 , pp. 364-371
    • Harding, A.S.1    Hancock, J.F.2
  • 26
    • 40549111933 scopus 로고    scopus 로고
    • Ras nanoclusters: Combining digital and analog signaling
    • A. Harding, and J.F. Hancock Ras nanoclusters: combining digital and analog signaling Cell Cycle 7 2008 127 134
    • (2008) Cell Cycle , vol.7 , pp. 127-134
    • Harding, A.1    Hancock, J.F.2
  • 28
    • 84868355821 scopus 로고    scopus 로고
    • Mathematical simulation of membrane protein clustering for efficient signal transduction
    • K. Radhakrishnan, and Á. Halász B.S. Wilson Mathematical simulation of membrane protein clustering for efficient signal transduction Ann. Biomed. Eng. 40 2012 2307 2318
    • (2012) Ann. Biomed. Eng. , vol.40 , pp. 2307-2318
    • Radhakrishnan, K.1    Halász, A.2    Wilson, B.S.3
  • 29
    • 40849135547 scopus 로고    scopus 로고
    • Single molecule diffusion study of activated EGFR implicates its endocytic pathway
    • Z. Xiao, and W. Zhang X. Fang Single molecule diffusion study of activated EGFR implicates its endocytic pathway Biochem. Biophys. Res. Commun. 369 2008 730 734
    • (2008) Biochem. Biophys. Res. Commun. , vol.369 , pp. 730-734
    • Xiao, Z.1    Zhang, W.2    Fang, X.3
  • 30
    • 84859047400 scopus 로고    scopus 로고
    • Monitoring the size and lateral dynamics of ErbB1 enriched membrane domains through live cell plasmon coupling microscopy
    • G. Rong, and B.M. Reinhard Monitoring the size and lateral dynamics of ErbB1 enriched membrane domains through live cell plasmon coupling microscopy PLoS ONE 7 2012 e34175
    • (2012) PLoS ONE , vol.7 , pp. 34175
    • Rong, G.1    Reinhard, B.M.2
  • 31
    • 23244442694 scopus 로고    scopus 로고
    • Cholesterol dictates the freedom of EGF receptors and HER2 in the plane of the membrane
    • G. Orr, and D. Hu S.D. Colson Cholesterol dictates the freedom of EGF receptors and HER2 in the plane of the membrane Biophys. J. 89 2005 1362 1373
    • (2005) Biophys. J. , vol.89 , pp. 1362-1373
    • Orr, G.1    Hu, D.2    Colson, S.D.3
  • 32
    • 38749148048 scopus 로고    scopus 로고
    • High-density mapping of single molecule trajectories with photoactivated localization microscopy
    • S. Manley, and J.M. Gillette J. Lippincott-Schwartz High-density mapping of single molecule trajectories with photoactivated localization microscopy Nat. Methods 5 2008 155 157
    • (2008) Nat. Methods , vol.5 , pp. 155-157
    • Manley, S.1    Gillette, J.M.2    Lippincott-Schwartz, J.3
  • 33
    • 0027504198 scopus 로고
    • Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells
    • A. Kusumi, Y. Sako, and M. Yamamoto Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells Biophys. J. 65 1993 2021 2040
    • (1993) Biophys. J. , vol.65 , pp. 2021-2040
    • Kusumi, A.1    Sako, Y.2    Yamamoto, M.3
  • 34
    • 78651304653 scopus 로고    scopus 로고
    • Mean square displacement analysis of single particle trajectories with localization error: Brownian motion in an isotropic medium
    • X. Michalet Mean square displacement analysis of single particle trajectories with localization error: Brownian motion in an isotropic medium Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 82 2010 041914
    • (2010) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.82 , pp. 041914
    • Michalet, X.1
  • 35
    • 0029162080 scopus 로고
    • Detection of temporary lateral confinement of membrane proteins using single particle tracking analysis
    • R. Simson, E.D. Sheets, and K. Jacobson Detection of temporary lateral confinement of membrane proteins using single particle tracking analysis Biophys. J. 69 1995 989 993
    • (1995) Biophys. J. , vol.69 , pp. 989-993
    • Simson, R.1    Sheets, E.D.2    Jacobson, K.3
  • 37
    • 79951893477 scopus 로고    scopus 로고
    • Trajectory analysis of single molecules exhibiting non-Brownian motion
    • L.C.C. Elliott, and M. Barhoum P.W. Bohn Trajectory analysis of single molecules exhibiting non-Brownian motion Phys. Chem. Chem. Phys. 13 2011 4326 4334
    • (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 4326-4334
    • Elliott, L.C.C.1    Barhoum, M.2    Bohn, P.W.3
  • 38
    • 58749095324 scopus 로고    scopus 로고
    • Versatile analysis of single molecule tracking data by comprehensive testing against Monte Carlo simulations
    • S. Wieser, M. Axmann, and G.J. Schütz Versatile analysis of single molecule tracking data by comprehensive testing against Monte Carlo simulations Biophys. J. 95 2008 5988 6001
    • (2008) Biophys. J. , vol.95 , pp. 5988-6001
    • Wieser, S.1    Axmann, M.2    Schütz, G.J.3
  • 39
    • 34548337168 scopus 로고    scopus 로고
    • A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells
    • J.A. Helmuth, and C.J. Burckhardt I.F. Sbalzarini A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells J. Struct. Biol. 159 2007 347 358
    • (2007) J. Struct. Biol. , vol.159 , pp. 347-358
    • Helmuth, J.A.1    Burckhardt, C.J.2    Sbalzarini, I.F.3
  • 40
    • 84874642927 scopus 로고    scopus 로고
    • Extracting intracellular diffusive states and transition rates from single molecule tracking data
    • F. Persson, and M. Lindén J. Elf Extracting intracellular diffusive states and transition rates from single molecule tracking data Nat. Methods 10 2013 265 269
    • (2013) Nat. Methods , vol.10 , pp. 265-269
    • Persson, F.1    Lindén, M.2    Elf, J.3
  • 41
    • 80051978813 scopus 로고    scopus 로고
    • Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function
    • K. Jaqaman, and H. Kuwata S. Grinstein Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function Cell 146 2011 593 606
    • (2011) Cell , vol.146 , pp. 593-606
    • Jaqaman, K.1    Kuwata, H.2    Grinstein, S.3
  • 42
    • 33846453991 scopus 로고    scopus 로고
    • A receptors in growth cones detected by a speed correlation index
    • A receptors in growth cones detected by a speed correlation index Biophys. J. 92 2007 654 660
    • (2007) Biophys. J. , vol.92 , pp. 654-660
    • Bouzigues, C.1    Dahan, M.2
  • 43
    • 33750340189 scopus 로고    scopus 로고
    • Quantitative characterization of changes in dynamical behavior for single-particle tracking studies
    • D. Montiel, H. Cang, and H. Yang Quantitative characterization of changes in dynamical behavior for single-particle tracking studies J. Phys. Chem. B 110 2006 19763 19770
    • (2006) J. Phys. Chem. B , vol.110 , pp. 19763-19770
    • Montiel, D.1    Cang, H.2    Yang, H.3
  • 44
    • 84886650183 scopus 로고    scopus 로고
    • Single-particle tracking reveals switching of the HIV fusion peptide between two diffusive modes in membranes
    • M. Ott, Y. Shai, and G. Haran Single-particle tracking reveals switching of the HIV fusion peptide between two diffusive modes in membranes J. Phys. Chem. B 117 2013 13308 13321
    • (2013) J. Phys. Chem. B , vol.117 , pp. 13308-13321
    • Ott, M.1    Shai, Y.2    Haran, G.3
  • 45
    • 4444279167 scopus 로고    scopus 로고
    • What is Bayesian statistics?
    • S.R. Eddy What is Bayesian statistics? Nat. Biotechnol. 22 2004 1177 1178
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1177-1178
    • Eddy, S.R.1
  • 46
    • 0742270981 scopus 로고    scopus 로고
    • Quantum dot ligands provide new insights into erbB/HER receptor-mediated signal transduction
    • D.S. Lidke, and P. Nagy T.M. Jovin Quantum dot ligands provide new insights into erbB/HER receptor-mediated signal transduction Nat. Biotechnol. 22 2004 198 203
    • (2004) Nat. Biotechnol. , vol.22 , pp. 198-203
    • Lidke, D.S.1    Nagy, P.2    Jovin, T.M.3
  • 49
    • 33846436076 scopus 로고    scopus 로고
    • Particle image correlation spectroscopy (PICS): Retrieving nanometer-scale correlations from high-density single-molecule position data
    • S. Semrau, and T. Schmidt Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data Biophys. J. 92 2007 613 621
    • (2007) Biophys. J. , vol.92 , pp. 613-621
    • Semrau, S.1    Schmidt, T.2
  • 50
    • 79959637365 scopus 로고    scopus 로고
    • Quantification of biological interactions with particle image cross-correlation spectroscopy (PICCS)
    • S. Semrau, and L. Holtzer T. Schmidt Quantification of biological interactions with particle image cross-correlation spectroscopy (PICCS) Biophys. J. 100 2011 1810 1818
    • (2011) Biophys. J. , vol.100 , pp. 1810-1818
    • Semrau, S.1    Holtzer, L.2    Schmidt, T.3
  • 51
    • 0025997180 scopus 로고
    • Single particle tracking. Analysis of diffusion and flow in two-dimensional systems
    • H. Qian, M.P. Sheetz, and E.L. Elson Single particle tracking. Analysis of diffusion and flow in two-dimensional systems Biophys. J. 60 1991 910 921
    • (1991) Biophys. J. , vol.60 , pp. 910-921
    • Qian, H.1    Sheetz, M.P.2    Elson, E.L.3
  • 52
    • 0027197103 scopus 로고
    • Lateral diffusion in an archipelago. Single-particle diffusion
    • M.J. Saxton Lateral diffusion in an archipelago. Single-particle diffusion Biophys. J. 64 1993 1766 1780
    • (1993) Biophys. J. , vol.64 , pp. 1766-1780
    • Saxton, M.J.1
  • 53
    • 0030953956 scopus 로고    scopus 로고
    • Single particle tracking: The distribution of diffusion coefficients
    • M.J. Saxton Single particle tracking: the distribution of diffusion coefficients Biophys. J. 72 1997 1744 1753
    • (1997) Biophys. J. , vol.72 , pp. 1744-1753
    • Saxton, M.J.1
  • 54
    • 77952216273 scopus 로고    scopus 로고
    • Fast, single molecule localization that achieves theoretically minimum uncertainty
    • C.S. Smith, and N. Joseph K.A. Lidke Fast, single molecule localization that achieves theoretically minimum uncertainty Nat. Methods 7 2010 373 375
    • (2010) Nat. Methods , vol.7 , pp. 373-375
    • Smith, C.S.1    Joseph, N.2    Lidke, K.A.3


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