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Volumn 105, Issue , 2014, Pages 59-66

Standardization of enterococci density estimates by EPA qPCR methods and comparison of beach action value exceedances in river waters with culture methods

Author keywords

Enterococcus; EPA methods; QPCR; Recreational water quality criteria

Indexed keywords

RIVER WATER; BACTERIAL DNA;

EID: 84905236838     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2014.07.007     Document Type: Article
Times cited : (23)

References (40)
  • 2
    • 77956233923 scopus 로고    scopus 로고
    • Comparison of methods for accurate quantification of DNA mass concentration with traceability to the international system of units
    • Bhat S., Curach N., Mostyn T., Singh Bains G., Griffiths K.R., Emslie K.R. Comparison of methods for accurate quantification of DNA mass concentration with traceability to the international system of units. Anal. Chem. 2010, 82(17):7185-7192.
    • (2010) Anal. Chem. , vol.82 , Issue.17 , pp. 7185-7192
    • Bhat, S.1    Curach, N.2    Mostyn, T.3    Singh Bains, G.4    Griffiths, K.R.5    Emslie, K.R.6
  • 3
    • 0037105748 scopus 로고    scopus 로고
    • Decadal and shorter period variability of surf zone water quality at Huntington Beach, California
    • Boehm A.B., Grant S.B., Kim J.H., Mowbray S.L., McGee C.D., Clark C.D., et al. Decadal and shorter period variability of surf zone water quality at Huntington Beach, California. Environ. Sci. Technol. 2002, 36(18):3885-3892.
    • (2002) Environ. Sci. Technol. , vol.36 , Issue.18 , pp. 3885-3892
    • Boehm, A.B.1    Grant, S.B.2    Kim, J.H.3    Mowbray, S.L.4    McGee, C.D.5    Clark, C.D.6
  • 4
    • 84870066243 scopus 로고    scopus 로고
    • Effect of platform, reference material, and quantification model on enumeration of general fecal indicators by quantitative PCR methods
    • Cao Y., Griffith J.F., Weisberg S.B., Sivaganesan M., Haugland R.A., Kinzelman J., Blackwood A.D., Noble R.T. Effect of platform, reference material, and quantification model on enumeration of general fecal indicators by quantitative PCR methods. Water Res. 2012, 47(1):233-241.
    • (2012) Water Res. , vol.47 , Issue.1 , pp. 233-241
    • Cao, Y.1    Griffith, J.F.2    Weisberg, S.B.3    Sivaganesan, M.4    Haugland, R.A.5    Kinzelman, J.6    Blackwood, A.D.7    Noble, R.T.8
  • 5
    • 77954280652 scopus 로고    scopus 로고
    • Comparison of fecal indicator bacteria densities in marine recreational waters by QPCR
    • Chern E.C., Brenner K.P., Wymer L., Haugland R.A. Comparison of fecal indicator bacteria densities in marine recreational waters by QPCR. Water Qual. Expo. Health 2009, 1:203-214.
    • (2009) Water Qual. Expo. Health , vol.1 , pp. 203-214
    • Chern, E.C.1    Brenner, K.P.2    Wymer, L.3    Haugland, R.A.4
  • 6
    • 84878655848 scopus 로고    scopus 로고
    • Rapid method demonstration project at four New Jersey marine beaches using real time quantitative polymerase chain reaction (qPCR)
    • Ferretti J.A., Tran H.V., Peterson S.J., Loftin V. Rapid method demonstration project at four New Jersey marine beaches using real time quantitative polymerase chain reaction (qPCR). Mar. Pollut. Bull. 2013, 71(1-2):51-63.
    • (2013) Mar. Pollut. Bull. , vol.71 , Issue.1-2 , pp. 51-63
    • Ferretti, J.A.1    Tran, H.V.2    Peterson, S.J.3    Loftin, V.4
  • 7
    • 84878279028 scopus 로고    scopus 로고
    • Comparing rapid and culture indicator bacteria methods at inland lake beaches
    • Francy D.S., Bushon R.N., Brady A.M.G., Kephart C.M. Comparing rapid and culture indicator bacteria methods at inland lake beaches. Lake Reservoir Manag. 2013, 29:99-102.
    • (2013) Lake Reservoir Manag. , vol.29 , pp. 99-102
    • Francy, D.S.1    Bushon, R.N.2    Brady, A.M.G.3    Kephart, C.M.4
  • 8
    • 84856035122 scopus 로고    scopus 로고
    • Challenges in implementing new technology for beach water quality monitoring: lessons from a California demonstration project
    • Griffith J.F., Weisberg S.B. Challenges in implementing new technology for beach water quality monitoring: lessons from a California demonstration project. Mar. Technol. Soc. J. 2011, 45(2):65-71.
    • (2011) Mar. Technol. Soc. J. , vol.45 , Issue.2 , pp. 65-71
    • Griffith, J.F.1    Weisberg, S.B.2
  • 9
    • 13544256490 scopus 로고    scopus 로고
    • Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis
    • Haugland R.A., Siefring S.C., Wymer L.J., Brenner K.P., Dufour A.P. Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis. Water Res. 2005, 39(4):559-568.
    • (2005) Water Res. , vol.39 , Issue.4 , pp. 559-568
    • Haugland, R.A.1    Siefring, S.C.2    Wymer, L.J.3    Brenner, K.P.4    Dufour, A.P.5
  • 10
    • 84867143751 scopus 로고    scopus 로고
    • Influences of sample interference and interference controls on quantification of enterococci fecal indicator bacteria in surface water by the qPCR method
    • Haugland R.A., Siefring S., Lavender J., Varma M. Influences of sample interference and interference controls on quantification of enterococci fecal indicator bacteria in surface water by the qPCR method. Water Res. 2012, 46(18):5989-6001.
    • (2012) Water Res. , vol.46 , Issue.18 , pp. 5989-6001
    • Haugland, R.A.1    Siefring, S.2    Lavender, J.3    Varma, M.4
  • 11
    • 84867141003 scopus 로고    scopus 로고
    • Comparative evaluation of molecular and culture methods for fecal indicator bacteria for use in inland recreational waters
    • IWA Publishing, London
    • Kinzelman J., Bushon R., Dorevitch S., Noble R. Comparative evaluation of molecular and culture methods for fecal indicator bacteria for use in inland recreational waters. Water Environment Research Foundation, PATH7R09 2011, IWA Publishing, London.
    • (2011) Water Environment Research Foundation, PATH7R09
    • Kinzelman, J.1    Bushon, R.2    Dorevitch, S.3    Noble, R.4
  • 13
    • 71949129402 scopus 로고    scopus 로고
    • A cross comparison of QPCR to agar-based or defined substrate test methods for the determination of Escherichia coli and enterococci in municipal water quality monitoring programs
    • Lavender J.S., Kinzelman J.L. A cross comparison of QPCR to agar-based or defined substrate test methods for the determination of Escherichia coli and enterococci in municipal water quality monitoring programs. Water Res. 2009, 43(19):4967-4979.
    • (2009) Water Res. , vol.43 , Issue.19 , pp. 4967-4979
    • Lavender, J.S.1    Kinzelman, J.L.2
  • 14
    • 0035202620 scopus 로고    scopus 로고
    • Effect of sampling frequency on shoreline microbiology assessments
    • Leecaster M., Weisberg S.B. Effect of sampling frequency on shoreline microbiology assessments. Mar. Pollut. Bull. 2001, 42:1150-1154.
    • (2001) Mar. Pollut. Bull. , vol.42 , pp. 1150-1154
    • Leecaster, M.1    Weisberg, S.B.2
  • 15
    • 0034488341 scopus 로고    scopus 로고
    • How quantitative is quantitative PCR with respect to cell counts?
    • Ludwig W., Schleifer K.H. How quantitative is quantitative PCR with respect to cell counts?. Syst. Appl. Microbiol. 2000, 23(4):556-562.
    • (2000) Syst. Appl. Microbiol. , vol.23 , Issue.4 , pp. 556-562
    • Ludwig, W.1    Schleifer, K.H.2
  • 16
    • 85067730585 scopus 로고    scopus 로고
    • Miller M.J. The RMM blog http://blog.rapidmicromethods.com/2013/04/beach-bacteria-dna-tests-offer-quicker.html.
    • The RMM blog
    • Miller, M.J.1
  • 17
    • 52049106854 scopus 로고    scopus 로고
    • Species distribution and antimicrobial resistance of enterococci isolated from surface and ocean water
    • Moore D.F., Guzman J.A., McGee C. Species distribution and antimicrobial resistance of enterococci isolated from surface and ocean water. J. Appl. Microbiol. 2008, 105(4):1017-1025.
    • (2008) J. Appl. Microbiol. , vol.105 , Issue.4 , pp. 1017-1025
    • Moore, D.F.1    Guzman, J.A.2    McGee, C.3
  • 18
    • 84875801855 scopus 로고    scopus 로고
    • Choices in recreational water quality monitoring: new opportunities and health risk trade-offs
    • Nevers M.B., Byappanahalli M.N., Whitman R.L. Choices in recreational water quality monitoring: new opportunities and health risk trade-offs. Environ. Sci. Technol. 2013, 47(7):3073-3081.
    • (2013) Environ. Sci. Technol. , vol.47 , Issue.7 , pp. 3073-3081
    • Nevers, M.B.1    Byappanahalli, M.N.2    Whitman, R.L.3
  • 19
    • 78649718614 scopus 로고    scopus 로고
    • Comparison of rapid quantitative PCR-based and conventional culture-based methods for enumeration of Enterococcus spp. and Escherichia coli in recreational waters. Appl
    • Noble R.T., Blackwood A.D., Griffith J.F., McGee C.D., Weisberg S.B. Comparison of rapid quantitative PCR-based and conventional culture-based methods for enumeration of Enterococcus spp. and Escherichia coli in recreational waters. Appl. Environ. Microbiol. 2010, 76(22):7437-7443.
    • (2010) Environ. Microbiol. , vol.76 , Issue.22 , pp. 7437-7443
    • Noble, R.T.1    Blackwood, A.D.2    Griffith, J.F.3    McGee, C.D.4    Weisberg, S.B.5
  • 20
    • 25444494901 scopus 로고    scopus 로고
    • Quantification strategies in real-time PCR
    • International University Line, La Jolla, S.A. Bustin (Ed.)
    • Pfaffl M.W. Quantification strategies in real-time PCR. A-Z of Quantitative PCR 2004, 87-112. International University Line, La Jolla. S.A. Bustin (Ed.).
    • (2004) A-Z of Quantitative PCR , pp. 87-112
    • Pfaffl, M.W.1
  • 21
    • 84893930707 scopus 로고    scopus 로고
    • Factors affecting the relationship between quantitative polymerase chain reaction (qPCR) and culture-based enumeration of Enterococcus
    • Raith M.R., Ebentier D.L., Cao Y., Griffith J.F., Weisberg S.B. Factors affecting the relationship between quantitative polymerase chain reaction (qPCR) and culture-based enumeration of Enterococcus. J. Appl. Microbiol. 2013, 116:737-746.
    • (2013) J. Appl. Microbiol. , vol.116 , pp. 737-746
    • Raith, M.R.1    Ebentier, D.L.2    Cao, Y.3    Griffith, J.F.4    Weisberg, S.B.5
  • 22
    • 84871860476 scopus 로고    scopus 로고
    • Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples
    • Ryu H., Henson M., Elk M., Toledo-Hernandez C., Griffith J., Blackwood D., Noble R., Gourmelon M., Glassmeyer S., Santo Domingo J.W. Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples. Appl. Environ. Microbiol. 2013, 79(1):196-204.
    • (2013) Appl. Environ. Microbiol. , vol.79 , Issue.1 , pp. 196-204
    • Ryu, H.1    Henson, M.2    Elk, M.3    Toledo-Hernandez, C.4    Griffith, J.5    Blackwood, D.6    Noble, R.7    Gourmelon, M.8    Glassmeyer, S.9    Santo Domingo, J.W.10
  • 24
    • 0021365987 scopus 로고
    • Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus norn. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov
    • Schleifer K.H., Kilpper-Bälz R. Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus norn. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov. Int. J. Syst. Bacteriol. 1984, 34:31-34.
    • (1984) Int. J. Syst. Bacteriol. , vol.34 , pp. 31-34
    • Schleifer, K.H.1    Kilpper-Bälz, R.2
  • 26
    • 77957020519 scopus 로고    scopus 로고
    • Improved strategies and optimization of calibration models for real-time PCR absolute quantification
    • Sivaganesan M., Haugland R.A., Chern E.C., Shanks O.C. Improved strategies and optimization of calibration models for real-time PCR absolute quantification. Water Res. 2010, 44(16):4726-4735.
    • (2010) Water Res. , vol.44 , Issue.16 , pp. 4726-4735
    • Sivaganesan, M.1    Haugland, R.A.2    Chern, E.C.3    Shanks, O.C.4
  • 27
    • 81055155887 scopus 로고    scopus 로고
    • MPN estimation of qPCR target sequence recoveries from whole cell calibrator samples
    • Sivaganesan M., Siefring S., Varma M., Haugland R.A. MPN estimation of qPCR target sequence recoveries from whole cell calibrator samples. J. Microbiol. Methods 2011, 87(3):343-349.
    • (2011) J. Microbiol. Methods , vol.87 , Issue.3 , pp. 343-349
    • Sivaganesan, M.1    Siefring, S.2    Varma, M.3    Haugland, R.A.4
  • 28
    • 84865703668 scopus 로고    scopus 로고
    • Comparison of Enterococcus qPCR analysis results from fresh and marine waters on two real-time instruments
    • Sivaganesan M., Varma M., Haugland R.A. Comparison of Enterococcus qPCR analysis results from fresh and marine waters on two real-time instruments. Anal. Biochem. 2012, 430(1):68-74.
    • (2012) Anal. Biochem. , vol.430 , Issue.1 , pp. 68-74
    • Sivaganesan, M.1    Varma, M.2    Haugland, R.A.3
  • 29
    • 84898645321 scopus 로고    scopus 로고
    • Comparison of Enterococcus quantitative polymerase chain reaction analysis results from Midwestern U.S. river samples using EPA Method 1611 and Method 1609 PCR reagents
    • Sivaganesan M., Siefring S., Varma M., Haugland R.A. Comparison of Enterococcus quantitative polymerase chain reaction analysis results from Midwestern U.S. river samples using EPA Method 1611 and Method 1609 PCR reagents. J. Microbiol. Methods 2014, 101:9-17.
    • (2014) J. Microbiol. Methods , vol.101 , pp. 9-17
    • Sivaganesan, M.1    Siefring, S.2    Varma, M.3    Haugland, R.A.4
  • 32
    • 84874733947 scopus 로고    scopus 로고
    • EPA-820-F-12-058, United States Environmental Protection Agency, Office of Water, Washington, DC, USEPA
    • USEPA Recreational Water Quality Criteria 2012, EPA-820-F-12-058, United States Environmental Protection Agency, Office of Water, Washington, DC.
    • (2012) Recreational Water Quality Criteria
  • 35
    • 71549157108 scopus 로고    scopus 로고
    • Evaluation of the enterococci indicator in biosolids using culture-based and quantitative PCR assays
    • Viau E., Peccia J. Evaluation of the enterococci indicator in biosolids using culture-based and quantitative PCR assays. Water Res. 2009, 43(19):4878-4887.
    • (2009) Water Res. , vol.43 , Issue.19 , pp. 4878-4887
    • Viau, E.1    Peccia, J.2
  • 36
    • 30344450088 scopus 로고    scopus 로고
    • Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness
    • Wade T.J., Calderon R.L., Sams E., Beach M., Brenner K.P., Williams A.H., Dufour A.P. Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness. Environ. Health Perspect. 2006, 114(1):24-28.
    • (2006) Environ. Health Perspect. , vol.114 , Issue.1 , pp. 24-28
    • Wade, T.J.1    Calderon, R.L.2    Sams, E.3    Beach, M.4    Brenner, K.P.5    Williams, A.H.6    Dufour, A.P.7
  • 37
    • 42149161018 scopus 로고    scopus 로고
    • High sensitivity of children to swimming-associated gastrointestinal illness: results using a rapid assay of recreational water quality
    • Wade T.J., Calderon R.L., Brenner K.P., Sams E., Beach M., Haugland R., Wymer L., Dufour A.P. High sensitivity of children to swimming-associated gastrointestinal illness: results using a rapid assay of recreational water quality. Epidemiology 2008, 19(3):375-383.
    • (2008) Epidemiology , vol.19 , Issue.3 , pp. 375-383
    • Wade, T.J.1    Calderon, R.L.2    Brenner, K.P.3    Sams, E.4    Beach, M.5    Haugland, R.6    Wymer, L.7    Dufour, A.P.8
  • 40
    • 70350763183 scopus 로고    scopus 로고
    • Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters
    • Walters S.P., Yamahara K.M., Boehm A.B. Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters. Water Res. 2009, 43(19):4929-4939.
    • (2009) Water Res. , vol.43 , Issue.19 , pp. 4929-4939
    • Walters, S.P.1    Yamahara, K.M.2    Boehm, A.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.