메뉴 건너뛰기




Volumn 87, Issue 3, 2011, Pages 343-349

MPN estimation of qPCR target sequence recoveries from whole cell calibrator samples

Author keywords

Bayesian; Calibrator cell equivalents; Comparative Ct; Most probable number; QPCR; Target sequences

Indexed keywords

ARTICLE; BACTERIAL CELL; BAYES THEOREM; CELL COUNT; CELL DENSITY; CONTROLLED STUDY; DNA EXTRACTION; INTERMETHOD COMPARISON; MONTE CARLO METHOD; MOST PROBABLE NUMBER; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROBABILITY; QUANTITATIVE ANALYSIS; STATISTICAL MODEL; UNCERTAINTY; WATER SAMPLING; WHOLE CELL;

EID: 81055155887     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.09.013     Document Type: Article
Times cited : (23)

References (24)
  • 1
    • 0346205399 scopus 로고    scopus 로고
    • Markov chain Monte Carlo method and its application
    • Brooks S.P. Markov chain Monte Carlo method and its application. Statistician 1998, 47:69-100.
    • (1998) Statistician , vol.47 , pp. 69-100
    • Brooks, S.P.1
  • 2
    • 77954280652 scopus 로고    scopus 로고
    • Comparison of fecal indicator bacteria densities in marine recreational waters by QPCR
    • Chern E.C., Brenner K.P., Wymer L., Haugland R.A. Comparison of fecal indicator bacteria densities in marine recreational waters by QPCR. Water Qual. Expo. Health 2009, 1:203-214.
    • (2009) Water Qual. Expo. Health , vol.1 , pp. 203-214
    • Chern, E.C.1    Brenner, K.P.2    Wymer, L.3    Haugland, R.A.4
  • 3
    • 79551651305 scopus 로고    scopus 로고
    • Comparison of quantitative PCR assays for Escherichia coli targeting ribosomal RNA and single copy genes
    • Chern E.C., Siefring S., Paar J., Doolittle M., Haugland R.A. Comparison of quantitative PCR assays for Escherichia coli targeting ribosomal RNA and single copy genes. Lett. Appl. Microbiol. 2011, 52:298-306.
    • (2011) Lett. Appl. Microbiol. , vol.52 , pp. 298-306
    • Chern, E.C.1    Siefring, S.2    Paar, J.3    Doolittle, M.4    Haugland, R.A.5
  • 4
    • 76549256965 scopus 로고
    • Estimation of bacterial densities of means of the "most probable number"
    • Cochran W.G. Estimation of bacterial densities of means of the "most probable number". Biometrics 1950, 6:105-116.
    • (1950) Biometrics , vol.6 , pp. 105-116
    • Cochran, W.G.1
  • 5
    • 0037719668 scopus 로고    scopus 로고
    • FDA's preferred MPN methods for standard, large or unusual tests, with a spreadsheet
    • Garthright W.E., Blodgett R.J. FDA's preferred MPN methods for standard, large or unusual tests, with a spreadsheet. Food Microbiol. 2003, 20:439-445.
    • (2003) Food Microbiol. , vol.20 , pp. 439-445
    • Garthright, W.E.1    Blodgett, R.J.2
  • 7
    • 51349141379 scopus 로고    scopus 로고
    • A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition
    • Guescini M., Sisti D., Rochii M.B.L., Stocchi L., Stocchi V. A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition. BMC Bioinformatics 2008, 9:326.
    • (2008) BMC Bioinformatics , vol.9 , pp. 326
    • Guescini, M.1    Sisti, D.2    Rochii, M.B.L.3    Stocchi, L.4    Stocchi, V.5
  • 9
    • 13544256490 scopus 로고    scopus 로고
    • Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis
    • Haugland R.A., Siefring S.C., Wymer L.J., Brenner K.P., Dufour A.P. Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis. Water Res. 2005, 39:559-568.
    • (2005) Water Res. , vol.39 , pp. 559-568
    • Haugland, R.A.1    Siefring, S.C.2    Wymer, L.J.3    Brenner, K.P.4    Dufour, A.P.5
  • 10
    • 0035117408 scopus 로고    scopus 로고
    • An international collaborative study to establish the 1st international standard for HIV-1 RNA for use in nucleic acid-based techniques
    • Holmes H., Davis C., Heath A., Hewlett I., Lelie N. An international collaborative study to establish the 1st international standard for HIV-1 RNA for use in nucleic acid-based techniques. J. Virol. Methods 2001, 92:141-150.
    • (2001) J. Virol. Methods , vol.92 , pp. 141-150
    • Holmes, H.1    Davis, C.2    Heath, A.3    Hewlett, I.4    Lelie, N.5
  • 11
    • 84985053410 scopus 로고
    • Automated statistical analysis of microbial enumeration by dilution series
    • Hurley M.A., Roscoe M.E. Automated statistical analysis of microbial enumeration by dilution series. J. Appl. Bacteriol. 1983, 55:159-164.
    • (1983) J. Appl. Bacteriol. , vol.55 , pp. 159-164
    • Hurley, M.A.1    Roscoe, M.E.2
  • 12
    • 0020036888 scopus 로고
    • Estimation of the most probable number with a programmable pocket calculator
    • Koch A.L. Estimation of the most probable number with a programmable pocket calculator. Appl. Environ. Microbiol. 1982, 43:488-490.
    • (1982) Appl. Environ. Microbiol. , vol.43 , pp. 488-490
    • Koch, A.L.1
  • 13
    • 0021639332 scopus 로고
    • Interval estimation of the density of organisms using a serial-dilution experiment
    • Loyer M.W., Hamilton M.A. Interval estimation of the density of organisms using a serial-dilution experiment. Biometrics 1984, 40:907-916.
    • (1984) Biometrics , vol.40 , pp. 907-916
    • Loyer, M.W.1    Hamilton, M.A.2
  • 14
    • 0006407254 scopus 로고    scopus 로고
    • WinBUGS - a Bayesian modeling framework: concepts, structure, and extensibility
    • Lunn D.J., Thomas A., Best N., Spiegelhalter D. WinBUGS - a Bayesian modeling framework: concepts, structure, and extensibility. Stat. Comput. 2000, 10:325-337.
    • (2000) Stat. Comput. , vol.10 , pp. 325-337
    • Lunn, D.J.1    Thomas, A.2    Best, N.3    Spiegelhalter, D.4
  • 15
    • 0242695037 scopus 로고    scopus 로고
    • Uncertainty in most probable number calculations for microbiological assays
    • McBride G.B., McWhirter J.L., Dalgety M.H. Uncertainty in most probable number calculations for microbiological assays. J. AOAC Int. 2003, 86:1084-1088.
    • (2003) J. AOAC Int. , vol.86 , pp. 1084-1088
    • McBride, G.B.1    McWhirter, J.L.2    Dalgety, M.H.3
  • 16
    • 25444494901 scopus 로고    scopus 로고
    • International University Line, La Jolla, S.A. Bustin (Ed.)
    • Pfaffl M.W. AeZ of quantitative PCR 2004, 87e112. International University Line, La Jolla. S.A. Bustin (Ed.).
    • (2004) AeZ of quantitative PCR
    • Pfaffl, M.W.1
  • 18
    • 81055155016 scopus 로고    scopus 로고
    • SAS 9.2 for windows, 2008. SAS Institute Inc., Cary, NC.
    • SAS 9.2 for windows, 2008. SAS Institute Inc., Cary, NC.
  • 19
    • 42149119481 scopus 로고    scopus 로고
    • A Bayesian method for calculating realtime quantitative PCR calibration curves using absolute plasmid DNA standards
    • Sivaganesan M., Seifring S., Varma M., Haugland R.A., Shanks O.C. A Bayesian method for calculating realtime quantitative PCR calibration curves using absolute plasmid DNA standards. BMC Bioinformatics 2008, 9:120.
    • (2008) BMC Bioinformatics , vol.9 , pp. 120
    • Sivaganesan, M.1    Seifring, S.2    Varma, M.3    Haugland, R.A.4    Shanks, O.C.5
  • 20
    • 77957020519 scopus 로고    scopus 로고
    • Improved strategies and optimization of calibration models for real-time PCR absolute quantification
    • Sivaganesan M., Haugland R.A., Chern E.C., Shanks O.C. Improved strategies and optimization of calibration models for real-time PCR absolute quantification. Water Res. 2010, 44:4726-4735.
    • (2010) Water Res. , vol.44 , pp. 4726-4735
    • Sivaganesan, M.1    Haugland, R.A.2    Chern, E.C.3    Shanks, O.C.4
  • 22
    • 30344450088 scopus 로고    scopus 로고
    • Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness
    • Wade T.J., Calderon R.L., Sams E., Beach M., Brenner K.P., Williams A.H., Dufour A.P. Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness. Environ. Health Prespect. 2006, 114:24-28.
    • (2006) Environ. Health Prespect. , vol.114 , pp. 24-28
    • Wade, T.J.1    Calderon, R.L.2    Sams, E.3    Beach, M.4    Brenner, K.P.5    Williams, A.H.6    Dufour, A.P.7
  • 23
    • 42149161018 scopus 로고    scopus 로고
    • High sensitivity of children to swimming-associated gastrointestinal illness: results using a rapid assay of recreational water quality
    • Wade T.J., Calderon R.L., Brenner K.P., Sams E., Beach M., Haugland R., Wymer L., Dufour A.P. High sensitivity of children to swimming-associated gastrointestinal illness: results using a rapid assay of recreational water quality. Epidemiology 2008, 19:375-383.
    • (2008) Epidemiology , vol.19 , pp. 375-383
    • Wade, T.J.1    Calderon, R.L.2    Brenner, K.P.3    Sams, E.4    Beach, M.5    Haugland, R.6    Wymer, L.7    Dufour, A.P.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.