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Volumn 65, Issue 15, 2014, Pages 4255-4269

R2R3-MYB gene pairs in Populus: Evolution and contribution to secondary wall formation and flowering time

Author keywords

Arabidopsis; evolution; flowering time; gene pair; Populus; R2R3 MYB; secondary wall thickening

Indexed keywords

TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

EID: 84905179174     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/eru196     Document Type: Article
Times cited : (60)

References (56)
  • 1
    • 0037256419 scopus 로고    scopus 로고
    • Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling
    • Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. The Plant Cell 15, 63-78.
    • (2003) The Plant Cell , vol.15 , pp. 63-78
    • Abe, H.1    Urao, T.2    Ito, T.3    Seki, M.4    Shinozaki, K.5    Yamaguchi-Shinozaki, K.6
  • 2
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: Application to sequence homology searches
    • Bailey T, Gribskov M. 1998. Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14, 48-54.
    • (1998) Bioinformatics , vol.14 , pp. 48-54
    • Bailey, T.1    Gribskov, M.2
  • 3
  • 9
    • 78649496699 scopus 로고    scopus 로고
    • Genetic analysis of interactions among gibberellin, abscisic acid, and brassinosteroids in the control of fowering time in Arabidopsis thaliana
    • Domagalska MA, Sarnowska E, Nagy F, Davis SJ. 2010. Genetic analysis of interactions among gibberellin, abscisic acid, and brassinosteroids in the control of fowering time in Arabidopsis thaliana. PloS One 17, e14012.
    • (2010) PloS One , vol.17
    • Domagalska, M.A.1    Sarnowska, E.2    Nagy, F.3    Davis, S.J.4
  • 10
    • 84871873139 scopus 로고    scopus 로고
    • The R2R3-MYB transcription factor gene family in maize
    • Du H, Feng B, Yang S, Huang Y, Tang Y. 2012. The R2R3-MYB transcription factor gene family in maize. PLoS One 7, e37463
    • (2012) PLoS One , vol.7
    • Du, H.1    Feng, B.2    Yang, S.3    Huang, Y.4    Tang, Y.5
  • 11
    • 0034846209 scopus 로고    scopus 로고
    • Extraction and isolation of lignin for utilization as a standard to determine lignin concentration using the acetyl bromide spectrophotometric method
    • Fukushima RS, Hatfeld RD. 2001. Extraction and isolation of lignin for utilization as a standard to determine lignin concentration using the acetyl bromide spectrophotometric method. Journal of Agricultural and Food Chemistry 49, 3133-3139.
    • (2001) Journal of Agricultural and Food Chemistry , vol.49 , pp. 3133-3139
    • Fukushima, R.S.1    Hatfeld, R.D.2
  • 12
    • 85047682929 scopus 로고    scopus 로고
    • GAMYB-like genes, fowering, and gibberellin signaling in Arabidopsis
    • Gocal GF, Sheldon CC, Gubler F, et al. 2001. GAMYB-like genes, fowering, and gibberellin signaling in Arabidopsis. Plant Physiology 127, 1682-1693.
    • (2001) Plant Physiology , vol.127 , pp. 1682-1693
    • Gocal, G.F.1    Sheldon, C.C.2    Gubler, F.3
  • 13
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman N, Yang, Z. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Molecular Biology and Evolution 11, 725-736.
    • (1994) Molecular Biology and Evolution , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 14
    • 54449091448 scopus 로고    scopus 로고
    • GSDS: A gene structure display server
    • Guo A, Zhu Q, Chen X, Luo J. 2007. GSDS: a gene structure display server. Yi Chuan 29, 1023-1026.
    • (2007) Yi Chuan , vol.29 , pp. 1023-1026
    • Guo, A.1    Zhu, Q.2    Chen, X.3    Luo, J.4
  • 15
    • 0041346460 scopus 로고    scopus 로고
    • AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana
    • Higginson T, Li SF, Parish RW. 2003. AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana. The Plant Journal 35, 177-192.
    • (2003) The Plant Journal , vol.35 , pp. 177-192
    • Higginson, T.1    Li, S.F.2    Parish, R.W.3
  • 16
    • 0036720020 scopus 로고    scopus 로고
    • s ratio: Diagnosing the form of sequence evolution
    • s ratio: diagnosing the form of sequence evolution. Trends in Genetics 18, 486.
    • (2002) Trends in Genetics , vol.18 , pp. 486
    • Hurst, L.D.1
  • 17
    • 82355168627 scopus 로고    scopus 로고
    • SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabiodpsis fibres and increases fibre cell area in Eucalyptus
    • Hussey SG, Mizrach E, Spokevicius AV, Bossinger G, Berger DK, Myburg AA. 2011. SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabiodpsis fibres and increases fibre cell area in Eucalyptus. BMC Plant Biology 11, 173.
    • (2011) BMC Plant Biology , vol.11 , pp. 173
    • Hussey, S.G.1    Mizrach, E.2    Spokevicius, A.V.3    Bossinger, G.4    Berger, D.K.5    Myburg, A.A.6
  • 19
    • 77950454617 scopus 로고    scopus 로고
    • The fowering of Arabidopsis fower development
    • Irish VF. 2010. The fowering of Arabidopsis fower development. The Plant Journal 61, 1014-1028.
    • (2010) The Plant Journal , vol.61 , pp. 1014-1028
    • Irish, V.F.1
  • 20
    • 4844230027 scopus 로고    scopus 로고
    • Identifcation of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L ssp indica
    • Jiang C, Gu X, Peterson T. 2004. Identifcation of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica. Genome Biology 5, R46.
    • (2004) Genome Biology , vol.5
    • Jiang, C.1    Gu, X.2    Peterson, T.3
  • 22
    • 77958558578 scopus 로고    scopus 로고
    • EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar
    • Legay S, Sivadon P, Blervacq A, et al. 2010. EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar. New Phytologist 188, 744-786.
    • (2010) New Phytologist , vol.188 , pp. 744-786
    • Legay, S.1    Sivadon, P.2    Blervacq, A.3
  • 23
    • 0029831579 scopus 로고    scopus 로고
    • One billion years of Myb
    • Lipsick JS. 1996. One billion years of Myb. Oncogene 13, 223-235.
    • (1996) Oncogene , vol.13 , pp. 223-235
    • Lipsick, J.S.1
  • 24
    • 84888247172 scopus 로고    scopus 로고
    • Genomic insights into salt adaptation in a desert poplar
    • Ma T, Wang J, Zhou G, et al. 2013. Genomic insights into salt adaptation in a desert poplar. Nature Communication 4, 2797.
    • (2013) Nature Communication , vol.4 , pp. 2797
    • Ma, T.1    Wang, J.2    Zhou, G.3
  • 25
    • 0031081131 scopus 로고    scopus 로고
    • MYB transcription factors in plants
    • Martin C, Paz-Ares J. 1997. MYB transcription factors in plants. Trends in Genetics 13, 67-73.
    • (1997) Trends in Genetics , vol.13 , pp. 67-73
    • Martin, C.1    Paz-Ares, J.2
  • 27
    • 66649132764 scopus 로고    scopus 로고
    • The would-, pathogen-, and ultraviolet B-responsive MYB134 gene encodes an R2R3 MYB transcription factor that regulates proanthocyanidin synthesis in poplar
    • Mellway R, Tran L, Prouse M, Campbell M, Constabel C. 2009. The would-, pathogen-, and ultraviolet B-responsive MYB134 gene encodes an R2R3 MYB transcription factor that regulates proanthocyanidin synthesis in poplar. Plant Physiology 150, 924-941.
    • (2009) Plant Physiology , vol.150 , pp. 924-941
    • Mellway, R.1    Tran, L.2    Prouse, M.3    Campbell, M.4    Constabel, C.5
  • 28
    • 56749180608 scopus 로고    scopus 로고
    • Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana
    • Melzer S, Lens F, Gennen J, Vanneste S, Rohde A, Beeckman T. 2008. Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana. Nature Genetics 40, 1489-1492.
    • (2008) Nature Genetics , vol.40 , pp. 1489-1492
    • Melzer, S.1    Lens, F.2    Gennen, J.3    Vanneste, S.4    Rohde, A.5    Beeckman, T.6
  • 29
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantifcation in real-time RT-PCR
    • Pfaff MW. 2001. A new mathematical model for relative quantifcation in real-time RT-PCR. Nucleic Acids Research 29, e45.
    • (2001) Nucleic Acids Research , vol.29
    • Pfaff, M.W.1
  • 31
    • 0034671865 scopus 로고    scopus 로고
    • Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
    • Riechmann JL, Heard J, Martin G, et al. 2000. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290, 2105-2110.
    • (2000) Science , vol.290 , pp. 2105-2110
    • Riechmann, J.L.1    Heard, J.2    Martin, G.3
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0018791923 scopus 로고
    • Determination of aldoses and uronic acid content of vegetable fber
    • Selvendran RR, March JF, Ring SG. 1979. Determination of aldoses and uronic acid content of vegetable fber. Analytical Biochemistry 96, 282-292.
    • (1979) Analytical Biochemistry , vol.96 , pp. 282-292
    • Selvendran, R.R.1    March, J.F.2    Ring, S.G.3
  • 34
    • 49949152379 scopus 로고    scopus 로고
    • Flowering as a condition for xylem expansion in Arabidopsis hypocotyl and root
    • Sibout R, Plantegenet S, Hardtke CS. 2008. Flowering as a condition for xylem expansion in Arabidopsis hypocotyl and root. Current Biology 18, 458-463.
    • (2008) Current Biology , vol.18 , pp. 458-463
    • Sibout, R.1    Plantegenet, S.2    Hardtke, C.S.3
  • 35
    • 34248653184 scopus 로고    scopus 로고
    • Rapid, transient expression of fuorescent fusion proteins in tobacco plants and generation of stably transformed plants
    • Sparkes IA, Runions J, Kearns A, Hawes C. 2006. Rapid, transient expression of fuorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nature Protocol 1, 2019-2025.
    • (2006) Nature Protocol , vol.1 , pp. 2019-2025
    • Sparkes, I.A.1    Runions, J.2    Kearns, A.3    Hawes, C.4
  • 36
    • 34248365134 scopus 로고    scopus 로고
    • Differential regulation of closely related R2R3-MYB transcription factors controls favonol accumulation in different parts of the Arabidopsis thaliana seedling
    • Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B. 2007. Differential regulation of closely related R2R3-MYB transcription factors controls favonol accumulation in different parts of the Arabidopsis thaliana seedling. The Plant Journal 50, 660-677.
    • (2007) The Plant Journal , vol.50 , pp. 660-677
    • Stracke, R.1    Ishihara, H.2    Huep, G.3    Barsch, A.4    Mehrtens, F.5    Niehaus, K.6    Weisshaar, B.7
  • 38
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596-1599.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 33644999271 scopus 로고    scopus 로고
    • Sucrose-specifc induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene
    • Teng S, Keurentjes J, Bentsink L, Koornneef M, Smeekens S. 2005. Sucrose-specifc induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiology 139, 1840-1852.
    • (2005) Plant Physiology , vol.139 , pp. 1840-1852
    • Teng, S.1    Keurentjes, J.2    Bentsink, L.3    Koornneef, M.4    Smeekens, S.5
  • 41
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Fexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: fexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876-4882.
    • (1997) Nucleic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 42
    • 84886615702 scopus 로고    scopus 로고
    • Functional characterization of the poplar R2R3-MYB transcription factor PtoMYB216 involved in the regulation of lignin biosynthesis during wood formation
    • Tian Q, Wang X, Li C, Lu W, Yang L, Jiang Y, Luo K. 2013. Functional characterization of the poplar R2R3-MYB transcription factor PtoMYB216 involved in the regulation of lignin biosynthesis during wood formation. PLoS ONE 8, e76369.
    • (2013) PLoS ONE , vol.8
    • Tian, Q.1    Wang, X.2    Li, C.3    Lu, W.4    Yang, L.5    Jiang, Y.6    Luo, K.7
  • 43
    • 34548309450 scopus 로고    scopus 로고
    • Functional analysis of the epidermal-specifc MYB genes CAPRICE and WEREWOLF in Arabidopsis
    • Tominaga R, Iwata M, Okada K, Wada T. 2007. Functional analysis of the epidermal-specifc MYB genes CAPRICE and WEREWOLF in Arabidopsis. The Plant Cell 19, 2264-2277.
    • (2007) The Plant Cell , vol.19 , pp. 2264-2277
    • Tominaga, R.1    Iwata, M.2    Okada, K.3    Wada, T.4
  • 44
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan GA, Difazio S, Jansson S, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596-1604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1    Difazio, S.2    Jansson, S.3
  • 45
    • 0014624455 scopus 로고
    • Semimicro determination of cellulose in biological materials
    • Updegraff DM. 1969. Semimicro determination of cellulose in biological materials. Analytical Biochemistry 32, 420-424.
    • (1969) Analytical Biochemistry , vol.32 , pp. 420-424
    • Updegraff, D.M.1
  • 46
    • 60249102826 scopus 로고    scopus 로고
    • Expansion and diversifcation of the Populus R2R3-MYB family of transcription factors
    • Wilkins O, Nahal H, Foong J, Provart NJ, Campbell MM. 2009. Expansion and diversifcation of the Populus R2R3-MYB family of transcription factors. Plant Physiology 149, 981-993.
    • (2009) Plant Physiology , vol.149 , pp. 981-993
    • Wilkins, O.1    Nahal, H.2    Foong, J.3    Provart, N.J.4    Campbell, M.M.5
  • 47
    • 33751112491 scopus 로고    scopus 로고
    • Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication
    • Yang X, Tuskan GA, Cheng Z. 2006. Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication. Plant Physiology 142, 820-830.
    • (2006) Plant Physiology , vol.142 , pp. 820-830
    • Yang, X.1    Tuskan, G.A.2    Cheng, Z.3
  • 48
    • 77950534428 scopus 로고    scopus 로고
    • Brassinosteroids control male fertility by regulating the expression of key genes involved in Arabidopsis anther and pollen development
    • Ye Q, Zhu W, Li L, Zhang S, Yin Y, Ma H, Wang X. 2010. Brassinosteroids control male fertility by regulating the expression of key genes involved in Arabidopsis anther and pollen development. Proceedings of the National Academy of Sciences, USA 107, 6100-6105.
    • (2010) Proceedings of the National Academy of Sciences, USA , vol.107 , pp. 6100-6105
    • Ye, Q.1    Zhu, W.2    Li, L.3    Zhang, S.4    Yin, Y.5    Ma, H.6    Wang, X.7
  • 49
    • 84883038469 scopus 로고    scopus 로고
    • MIWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes fowering
    • Yu Y, Hu R, Wang H, Cao Y, He G, Fu C, Zhou G. 2013. MIWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes fowering. Plant Science 212, 1-9.
    • (2013) Plant Science , vol.212 , pp. 1-9
    • Yu, Y.1    Hu, R.2    Wang, H.3    Cao, Y.4    He, G.5    Fu, C.6    Zhou, G.7
  • 50
    • 84555188533 scopus 로고    scopus 로고
    • Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress
    • Zhang L, Zhao G, Jia J, Liu X, Kong X. 2012. Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress. Journal of Experimental Botany 63, 203-214.
    • (2012) Journal of Experimental Botany , vol.63 , pp. 203-214
    • Zhang, L.1    Zhao, G.2    Jia, J.3    Liu, X.4    Kong, X.5
  • 51
    • 37849021893 scopus 로고    scopus 로고
    • SAD2, an importin β-like protein, is required for UV-B response in Arabidopsis by mediating MYB4 nuclear traffcking
    • Zhao J, Zhang W, Zhao Y, Gong X, Guo L, Zhu G, Wang X, Gong Z, Shumaker KS, Guo Y. 2007. SAD2, an importin β-like protein, is required for UV-B response in Arabidopsis by mediating MYB4 nuclear traffcking. The Plant Cell 19, 3805-3818.
    • (2007) The Plant Cell , vol.19 , pp. 3805-3818
    • Zhao, J.1    Zhang, W.2    Zhao, Y.3    Gong, X.4    Guo, L.5    Zhu, G.6    Wang, X.7    Gong, Z.8    Shumaker, K.S.9    Guo, Y.10
  • 52
    • 33845736876 scopus 로고    scopus 로고
    • SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fbers of Arabidopsis
    • Zhong R, Demura T, Ye ZH. 2006. SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fbers of Arabidopsis. The Plant Cell 18, 3158-3170.
    • (2006) The Plant Cell , vol.18 , pp. 3158-3170
    • Zhong, R.1    Demura, T.2    Ye, Z.H.3
  • 53
    • 57749119425 scopus 로고    scopus 로고
    • A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis
    • Zhong R, Lee C, Zhou J, McCarthy R, Ye ZH. 2008. A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. The Plant Cell 20, 2763-2782.
    • (2008) The Plant Cell , vol.20 , pp. 2763-2782
    • Zhong, R.1    Lee, C.2    Zhou, J.3    McCarthy, R.4    Ye, Z.H.5
  • 54
    • 84880804847 scopus 로고    scopus 로고
    • The poplar MYB master switches bind to the SMRE site and activate the secondary wall biosynthetic program during wood formation
    • Zhong R, McCarthy R, Haghighat M, Ye ZH. 2013. The poplar MYB master switches bind to the SMRE site and activate the secondary wall biosynthetic program during wood formation. PLoS ONE 8, e69219.
    • (2013) PLoS ONE , vol.8
    • Zhong, R.1    McCarthy, R.2    Haghighat, M.3    Ye, Z.H.4
  • 55
    • 35748936175 scopus 로고    scopus 로고
    • The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis
    • Zhong R, Richardson EA, Ye ZH. 2007. The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. The Plant Cell 19, 2776-2792.
    • (2007) The Plant Cell , vol.19 , pp. 2776-2792
    • Zhong, R.1    Richardson, E.A.2    Ye, Z.H.3
  • 56
    • 62549142281 scopus 로고    scopus 로고
    • MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis
    • Zhou J, Lee C, Zhong R, Ye ZH. 2009. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. The Plant Cell 21, 248-266.
    • (2009) The Plant Cell , vol.21 , pp. 248-266
    • Zhou, J.1    Lee, C.2    Zhong, R.3    Ye, Z.H.4


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