Antibiotic resistance among cultured bacterial isolates from bioethanol fermentation facilities across the United States

Current Microbiology

Volumn 69, Issue 3, 2014, Pages 277-285

  Murphree, Colin A ^a,c   Heist, E Patrick ^b   Moe, Luke A ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

^b Ferm Solutions   (United States)

^c NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84905163860     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-014-0583-y     Document Type: Article

References (42)

1. Aguirre M, Collins MD (1993) Lactic acid bacteria and human clinical infection. J Appl Microbiol 75:95-107 (Pubitemid 23244069)
2. Allen HK, Moe LA, Rodbumrer J, Gaarder A, Handelsman J (2009) Functional metagenomics reveals diverse b-lactamases in a remote Alaskan soil. ISME J 3:243-251
3. Allignet J, Loncle V, El Solh N (1992) Sequence of a staphylococcal plasmid gene, vga, encoding a putative ATP-binding protein involved in resistance to virginiamycin A-like antibiotics. Gene 117:45-51
4. Altschul SF, Gish W, Miller W, Meyers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
5. Ammor MS, Belen Florez A, Mayo B (2007) Antibiotic resistance in non-enterococcal lactic acid bacteria and bifidobacteria. Food Microbiol 24:559-570 (Pubitemid 46517967)
6. Arthur M, Molinas C, Mabilat C, Courvalin P (1990) Detection of erythromycin resistance by the polymerase chain reaction using primers in conserved regions of erm rRNA methylase genes. Antimicrob Agents Chemother 34:2024-2026 (Pubitemid 20290308)
7. Barney M, Volgyi A, Navarro A, Ryder D (2001) Riboprinting and 16S rRNA gene sequencing for identification of brewery Pediococcus isolates. Appl Environ Microbiol 67:553-560 (Pubitemid 32121341)
8. Carraro L, Maifreni M, Bartolomeoli I, Martino ME, Novelli E, Frigo F, Marino M, Cardazzo B (2011) Comparison of culture-dependent and -independent methods for bacterial community monitoring during Montasio cheese manufacturing. Res Microbiol 162:231-239
9. Davidson B, Kordias N, Dobos M, Hillier A (1996) Genomic organization of lactic acid bacteria. Antonie Van Leeuwenhoek 70:161-183 (Pubitemid 26355499)
10. DiPersio LP, DiPersio JR, Frey KC, Beach JA (2008) Prevalence of the erm(T) gene in clinical isolates of erythromycin-resistant group D Streptococcus and Enterococcus. Antimicrob Agents Chemother 52:1567-1569 (Pubitemid 351522038)
11. Egervarn M, Danielsen M, Roos S, Lindmark H, Lindgren S (2007) Antibiotic susceptibility profiles of Lactobacillus reuteri and Lactobacillus fermentum . J Food Prot 70:412-418
12. Grohmann E, Muth G, Espinosa M (2003) Conjugative plasmid transfer in Gram-positive bacteria. Microbiol Mol Biol Rev 67:277-301 (Pubitemid 36693475)
13. Heist EP (2009) Identifying and controlling the fuel ethanol plant's most common microbial contaminants. Ethanol Producer Mag 15:114-115
14. Humblot C, Guyot JP (2009) Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods such as pearl millet slurries. Appl Environ Microbiol 75:4354-4361
15. Jalava J, Marttila H (2004) Application of molecular genetic methods in macrolide, lincosamide and streptogramin resistance diagnostics and in detection of drug-resistant Mycobacterium tuberculosis. APMIS 112:838-855
16. Jensen LB, Hammerum AM, Aarestrup FM (2000) Linkage of vat(E) and erm(B) in streptogramin-resistant Enterococcus faecium isolates from Europe. Antimicrob Agents Chemother 44:2231-2232 (Pubitemid 30484463)
17. Jung Y-H, Shin ES, Kim O, Yoo JS, Lee KM, Yoo JI, Chung GT, Lee YS (2010) Characterization of two newly identified genes, vgaD and vatG, conferring resistance to streptogramin A in Enterococcus faecium . Antimicrob Agents Chemother 54:4744-4749
18. Kastner S, Perreten V, Bleuler H, Hugenschmidt G, Lacroix C, Meile L (2006) Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food. Syst Appl Microbiol 29:145-155 (Pubitemid 43197812)
19. Klare I, Konstabel C, Werner G, Huys G, Vankerckhoven V, Kahlmeter G, Hildebrandt B, Muller-Bertling S, Witte W, Goossens H (2007) Antimicrobial susceptibilities of Lactobacillus, Pediococcus and Lactococcus human isolates and cultures intended for probiotic or nutritional use. J Antimicrob Chemother 59:900-912 (Pubitemid 47073361)
20. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. Wiley, New York, pp 115-175
21. Lina G, Quaglia A, Reverdy M-E, Leclercq R, Vandenesch F, Etienne J (1999) Distribution of genes encoding resistance to macrolides, lincosamides, and streptogramins among staphylococci. Antimicrob Agents Chemother 43:1062-1066 (Pubitemid 29214725)
22. Majamaa H, Isolauri E, Saxelin M, Vesikari T (1995) Lactic acid bacteria in the treatment of acute rotavirus gastroenteritis. J Pediatr Gastroenterol Nutr 20:333-338
23. Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee J-H, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (2006) Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci USA 103:15611-15616 (Pubitemid 44625640)
24. Mathur S, Singh R (2005) Antibiotic resistance in food lactic acid bacteria - a review. Int J Food Microbiol 105:281-295 (Pubitemid 41728885)
25. Ouwehand AC, Salminen S, Isolauri E (2002) Probiotics: an overview of beneficial effects. Antonie Van Leeuwenhoek 82:279-289
26. Poole K (2004) Resistance to beta-lactam antibiotics. Cell Mol Life Sci 61:2200-2223
27. Rantsiou K, Urso R, Iacumin L, Cantoni C, Cattaneo P, Comi G, Cocolin L (2005) Culture-dependent and -independent methods to investigate the microbial ecology of Italian fermented sausages. Appl Environ Microbiol 71:1977-1986 (Pubitemid 40546121)
28. Roberts MC (2008) Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genes. FEMS Microbiol Lett 282:147-159
29. Roh SW, Kim KH, Nam YD, Chang HW, Park EJ, Bae JW (2010) Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J 4:1-16
30. Rosander A, Connolly E, Roos S (2008) Removal of antibiotic resistance gene-carrying plasmids from Lactobacillus reuteri ATCC 55730 and characterization of the resulting daughter strain, L. reuteri DSM 17938. Appl Environ Microbiol 74:6032-6040
31. Scheirlinck I, Van der Meulen R, Van Schoor A, Vancanneyt M, De Vuyst L, Vandamme P, Huys G (2008) Taxonomic structure and stability of the bacterial community in Belgian sourdough ecosystems as assessed by culture and population fingerprinting. Appl Environ Microbiol 74:2414-2423 (Pubitemid 351555453)
32. Singh KV, Murray BE (2005) Differences in the Enterococcus faecalis lsa locus that influence susceptibility to quinupristindalfopristin and clindamycin. Antimicrob Agents Chemother 49:32-39 (Pubitemid 40065769)
33. Singh KV, Malathum K, Murray BE (2001) Disruption of an Enterococcus faecium species-specific gene, a homologue of acquired macrolide resistance genes of staphylococci, is associated with an increase in macrolide susceptibility. Antimicrob Agents Chemother 45:263-266 (Pubitemid 32039124)
34. Singh KV, Weinstock GM, Murray BE (2002) An Enterococcus faecalis ABC homologue (Lsa) is required for the resistance of this species to clindamycin and quinupristin-dalfopristin. Antimicrob Agents Chemother 46:1845-1850 (Pubitemid 34535206)
35. Stepanovic S, Vukovic D, Dakic I, Branislava S, Svabic-Vlahovic M (2000) A modified microtiter-plate test for quantification of staphylococcal biofilm formation. J Microbiol Methods 40:175-179 (Pubitemid 30107900)
36. Sutcliffe J, Grebe T, Tait-Kamradt A, Wondrack L (1996) Detection of erythromycin-resistant determinants by PCR. Antimicrob Agents Chemother 40:2562-2566 (Pubitemid 26367644)
37. Teuber M, Meile L, Schwarz F (1999) Acquired antibiotic resistance in lactic acid bacteria from food. Antonie Van Leeuwenhoek 76:115-137 (Pubitemid 29440723)
38. van Reenen C, Dicks L (2011) Horizontal gene transfer amongst probiotic lactic acid bacteria and other intestinal microbiota: what are the possibilities? a review. Arch Microbiol 193:157-168
39. Varaldo PE, Montanari MP, Giovanetti E (2009) Genetic elements responsible for erythromycin resistance in streptococci. Antimicrob Agents Chemother 53:343-353
40. Werner G, Hildebrandt B, Witte W (2001) The newly described msrC gene is not equally distributed among all isolates of Enterococcus faecium. Antimicrob Agents Chemother 45:3672-3673 (Pubitemid 33107906)
41. Wibowo D, Eschenbruch R, Davis CR, Fleet GH, Lee TH (1985) Occurrence and growth of lactic acid bacteria in wine: a review. Am J Enol Vitic 36:302-313
42. Zarazaga M, Saenz Y, Portillo A, Tenorio C, Ruiz-Larrea F, Del Campo R, Baquero F, Torres C (1999) In Vitro Activities of Ketolide HMR3647, Macrolides, and Other Antibiotics against Lactobacillus, Leuconostoc, and Pediococcus Isolates. Antimicrob Agents Chemother 43:3039-3041