Corrigendum: Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: Mechanisms and challenges (Journal of Experimental Botany (2014) 65:15 (4065-4095) DOI: 10.1093/jxb/eru191);Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: Mechanisms and challenges

Journal of Experimental Botany

Volumn 65, Issue 15, 2014, Pages 4065-4095

  Porcar Castell, Albert ^a   Tyystjärvi, Esa ^b   Atherton, Jon ^a   Van Der Tol, Christiaan ^c   Flexas, Jaume ^d   Pfündel, Erhard E ^e   Moreno, Jose ^f   Frankenberg, Christian ^g   Berry, Joseph A ^h  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF TURKU   (Finland)

^c UNIVERSITY OF TWENTE   (Netherlands)

^d UNIVERSITAT DE LES ILLES BALEARS   (Spain)

^e Heinz Walz GmbH   (Germany)

^f UNIVERSITY OF VALENCIA   (Spain)

^g CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^h GEOPHYSICAL LABORATORY   (United States)

Author keywords

GPP; Gross primary production; leaf level; PAM; photosynthesis dynamics; photosystem I; photosystem II; PSI; PSII; PSII connectivity; pulse amplitude modulation; remote sensing; SIF; solar induced fluorescence; sun induced fluorescence

Indexed keywords

CHLOROPHYLL; CHLOROPHYLL A;

BIOMASS; CHEMISTRY; FLUORESCENCE; METABOLISM; PHOTOSYNTHESIS; PLANT LEAF; REMOTE SENSING; SEASON;

BIOMASS; CHLOROPHYLL; FLUORESCENCE; PHOTOSYNTHESIS; PLANT LEAVES; REMOTE SENSING TECHNOLOGY; SEASONS;

EID: 84905158197     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erv412     Document Type: Erratum

References (270)

1. Adams WW III, Demmig-Adams B. 1994. Carotenoid composition and down regulation of Photosystem II in three conifer species during the winter. Physiologia Plantarum 92, 451-458.
2. Adams WW III, Demmig-Adams B. 2004. Chlorophyll fuorescence as a tool to monitor plant response to the environment. In: Papageorgiou GC, Govindjee, eds. Chlorophyll a fuorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 583-604.
3. Adams WW III, Winter K, Schreiber U, Schramel P. 1990. Photosynthesis and chlorophyll fuorescence characteristics in relationship to changes in pigment and element composition of leaves of Platanus occidentalis L. during autumnal leaf senescence. Plant Physiology 92, 1184-1190.
4. Agati G. 1998. Response of the in vivo chlorophyll fuorescence spectrum to environmental factors and laser excitation wavelength. Pure and Applied Optics 7, 797-807.
5. Agati G, Cerovic ZG, Moya I. 2000. The effect of decreasing temperature up to chilling values on the in vivo F685/F735 chlorophyll fuorescence ratio in Phaseolus vulgaris and Pisum sativum: the role of the photosystem I contribution to the 735 nm fuorescence band. Photochemistry and Photobiology 72, 75-84.
6. Agati G, Mazzinghi P, Fusi F, Ambrosini I. 1995. The F685/F730 chlorophyll fuorescence ratio as a tool in plant physiology: response to physiological and environmental factors. Journal of Plant Physiology 145, 228-238.
7. Allen E. 1964. Fluorescent white dyes: calculation of fuorescence from refectivity values. Journal of the Optical Society of America 54, 506-514.
8. Anderson JM, Chow WS, Goodchild DJ. 1988. Thylakoid membrane organisation in sun/shade acclimation. Australian Journal of Plant Physiology 15, 11-26.
9. Andrizhiyevskaya EG, Frolov D, van Grondelle R, Dekker JP. 2004. On the role of the CP47 core antenna in the energy transfer and trapping dynamics of photosystem II. Physical Chemistry Chemical Physics 6, 4810-4819.
10. Antal TK, Kovalenko IB, Rubin AB, Tyystjärvi E. 2013. Photosynthesis-related quantities for education and modeling. Photosynthesis Research 117, 1-30.
11. Arena C, Vitale L, De Santo AV. 2008. Paraheliotropism in Robinia pseudoacacia L.: an effcient strategy to optimise photosynthetic performance under natural environmental conditions. Plant Biology 10, 194-201.
12. Asada K. 2000. The water-water cycle as alternative photon and electron sinks. Philosophical Transactions of the Royal Society B: Biological Sciences 355, 1419-1431.
13. Atkin OK, Bruhn D, Hurry VM, Tjoelker MG. 2005. Evans Review No. 2. The hot and the cold: unravelling the variable response of plant respiration to temperature. Functional Plant Biology 32, 87-105.
14. Baker NR. 2008. Chlorophyll fuorescence: a probe of photosynthesis in vivo. Annual Review of Plant Biology 59, 89-113.
15. Baker NR, Oxborough K. 2004. Chlorophyll fluorescence as a probe of photosynthetic productivity. In: Papageorgiou GC, Govindjee, eds. Chlorophyll a fluorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 65-82.
16. Baldocchi D. 2008. Breathing of the terrestrial biosphere: lessons learned from a global network of carbon dioxide fux measurement systems. Australian Journal of Botany 56, 1-26.
17. Ballottari M, Dall'Osto L, Morosinotto T, Bassi R. 2007. Contrasting behavior of higher plant photosystem I and II antenna systems during acclimation. Journal of Biological Chemistry 282, 8947-8958.
18. Balzarolo M, Anderson K, Nichol C, et al. 2011. Ground-based optical measurements at European fux sites: a review of methods, instruments and current controversies. Sensors 11, 7954-7981.
19. Barber J, Malkin S, Telfer A, Schreiber U. 1989. The origin of chlorophyll fuorescence in vivo and its quenching by the photosystem II reaction centre. Philosophical Transactions of the Royal Society B: Biological Sciences 323, 227-239.
20. Barber J, Andersson B. 1992. Too much of a good thing: light can be bad for photosynthesis. Trends in Biochemical Sciences 17, 61-66.
21. Barton CVM, North PRJ. 2001. Remote sensing of canopy light use effciency using the photochemical refectance index: model and sensitivity analysis. Remote Sensing of Environment 78, 264-273.
22. Beer C, Reichstein M, Tomelleri E, et al. 2010. Terrestrial gross carbon dioxide uptake: global distribution and covariation with climate. Science 329, 834-838.
23. Ben-Shem A, Frolow F, Nelson N. 2003. Crystal structure of plant photosystem I. Nature 426, 630-635.
24. Biehler K, Fock H. 1996. Evidence for the contribution of the Mehler-peroxidase reaction in dissipating excess electrons in drought-stressed wheat. Plant Physiology 112, 265-272.
25. Bilger W, Björkman O. 1991. Temperature dependence of violaxanthin de-epoxidation and non-photochemical fuorescence quenching in intact leaves of Gossypium hirsutum L. and Malva parvifora L. Planta 184, 226-234.
26. 2 evolution and chlorophyll fuorescence characteristics at 77 K among vascular plants of diverse origins. Planta 170, 489-504.
27. Boichenko VA. 1998. Action spectra and functional antenna sizes of Photosystems I and II in relation to the thylakoid membrane organization and pigment composition. Photosynthesis Research 58, 163-174.
28. Bolhàr-Nordenkampf HR, Long SP, Baker NR, Öquist G, Schreiber U, Lechner EG. 1989. Chlorophyll fuorescence as a probe of the photosynthetic competence of leaves in the feld: a review of current instrumentation. Functional Ecology 3, 497-514.
29. Bradbury M, Baker NR. 1981. Analysis of the slow phases of the in vivo chlorophyll fuorescence induction curve. Changes in the redox state of photosystem II electron acceptors and fuorescence emission from photosystems I and II. Biochimica et Biophysica Acta 635, 542-551.
30. Britt RD. 1996. Oxygen evolution. In: Ort DR, Yocum CF, eds. Oxygenic photosynthesis: the light reactions. Dordrecht: Kluwer Academic Publishers, 137-164.
31. Brody SS, Brody M. 1962. Fluorescence properties of aggregated chlorophyll in vivo and in vitro. Transactions of the Faraday Society 58, 416-428.
32. Brody SS, Rabinowitch E. 1957. Excitation lifetime of photosynthetic pigments in vitro and in vivo. Science 125, 555-557.
33. Brugnoli E, Björkman O. 1992. Chloroplast movements in leaves: infuence on chlorophyll fuorescence and measurements of light-induced absorbance changes related to ΔpH and zeaxanthin formation. Photosynthesis Research 32, 23-35.
34. Buschmann C, Lichtenthaler HK. 1998. Principles and characteristics of multi-colour fuorescence imaging of plants. Journal of Plant Physiology 152, 297-314.
35. Butler WL. 1978. Energy distribution in the photochemical apparatus of photosynthesis. Annual Review of Plant Physiology 29, 345-378.
36. Butler WL, Kitajima M. 1975. Fluorescence quenching in photosystem II of chloroplasts. Biochimica et Biophysica Acta 376, 116-125.
37. Campbell DA, Tyystjärvi E. 2012. Parameterization of photosystem II photoinactivation and repair. Biochimica et Biophysica Acta 1817, 258-265.
38. Campbell PE, Middleton E, Corp L, Kim M. 2008. Contribution of chlorophyll fuorescence to the apparent vegetation refectance. Science of the Total Environment 404, 433-439.
39. Chow WS, Kim E, Horton P, Anderson JM. 2005. Granal stacking of thylakoid membranes in higher plant chloroplasts: the physicochemical forces at work and the functional consequences that ensue. Photochemical and Photobiological Sciences 4, 1081-1090.
40. Chow WS, Melis A, Anderson JM. 1990. Adjustments of photosystem stoichiometry in chloroplasts improve the quantum effciency of photosynthesis. Proceedings of the National Academy of Sciences, USA 87, 7502-7506.
41. Clegg RM. 2004. Nuts and bolts of excitation energy migration and energy transfer. In: Papageorgiou GC, Govindjee, eds. Chlorophyll a fuorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 83-105.
42. Close DC, Beadle CL. 2003. The ecophysiology of foliar anthocyanin. Botanical Review 69, 149-161.
43. Croce R, Zucchelli G, Garlaschi FM, Bassi R, Jennings RC. 1996. Excited state equilibration in the photosystem I-light-harvesting I complex: P700 is almost isoenergetic with its antenna. Biochemistry 35, 8572-8579.
44. Dau H. 1994. Molecular mechanisms and quantitative models of variable photosystem II fuorescence. Photochemistry and Photobiology 60, 1-23.
45. Dau H, Sauer K. 1996. Exciton equilibration and photosystem II exciton dynamics-a fuorescence study on photosystem II membrane particles of spinach. Biochimica et Biophysica Acta 1273, 175-190.
46. Daughtry CST, Walthall CL, Kim MS, De Colstoun EB, McMurtrey JE III. 2000. Estimating corn leaf chlorophyll concentration from leaf and canopy refectance. Remote Sensing of Environment 74, 229-239.
47. Daumard F, Goulas Y, Champagne S, Fournier A, Ounis A, Olioso A, Moya I. 2012. Continuous monitoring of canopy level sun-induced chlorophyll fuorescence during the growth of a sorghum feld. IEEE Transactions on Geoscience and Remote Sensing 50, 4292-4300.
48. Demmig-Adams B. 1990. Carotenoids and photoprotection in plants: a role for the xanthophyll zeaxanthin. Biochimica et Biophysica Acta 1020, 1-24.
49. Demmig-Adams B. 1998. Survey of thermal energy dissipation and pigment composition in sun and shade leaves. Plant and Cell Physiology 39, 474-482.
50. Demmig-Adams B, Adams WW III. 2000. Harvesting sunlight safely. Nature 403, 371-374.
51. Demmig-Adams B, Adams WW III. 2006. Photoprotection in an ecological context: the remarkable complexity of thermal energy dissipation. New Phytologist 172, 11-21.
52. Diaz M, de Haro V, Munoz R, Quiles MJ. 2007. Chlororespiration is involved in the adaptation of Brassica plants to heat and high light intensity. Plant, Cell and Environment 30, 1578-1585.
53. Drolet GG, Huemmrich KF, Hall FG, Middleton EM, Black TA, Barr AG, Margolis HA. 2005. A MODIS-derived photochemical refectance index to detect inter-annual variations in the photosynthetic light-use effciency of a boreal deciduous forest. Remote Sensing of Environment 98, 212-224.
54. Drolet GG, Wade T, Nichol CJ, MacLellan C, Levula J, Porcar-Castell A, Nikinmaa E, Vesala T. 2014. A temperature-controlled spectrometer system for continuous and unattended measurements of canopy spectral radiance and refectance. International Journal of Remote Sensing 35, 1769-1785.
55. Durnford DG, Falkowski PG. 1997. Chloroplast redox regulation of nuclear gene transcription during photoacclimation. Photosynthesis Research 53, 229-241.
56. Duysens LNM. 1979. Transfer and trapping of excitation energy in photosystem II. In: Wolstenholme GEW, Fitssimons DW, eds. Chlorophyll organization and energy transfer in photosynthesis. CIBA Foundation Symposium, Vol. 61. Amsterdam: Exerpta Medica, 323-364.
57. Duysens LNM, Sweers HE. 1963. Mechanism of two photochemical reactions in algae as studied by means of fuorescence. In: Japanese Society of Plant Physiologists, eds. Studies on microalgae and photosynthetic bacteria. Tokyo: University of Tokyo Press, 353-372.
58. Ehleringer J, Bjorkman O, Mooney HA. 1976. Leaf pubescence: effects on absorptance and photosynthesis in a desert shrub. Science 192, 376-377.
59. Eichelmann H, Oja V, Rasulov B, Padu E, Bichele I, Pettai H, Mänd P, Kull O, Laisk A. 2005. Adjustment of leaf photosynthesis to shade in a natural canopy: reallocation of nitrogen. Plant, Cell and Environment 28, 389-401.
60. Ellsworth D, Reich P. 1993. Canopy structure and vertical patterns of photosynthesis and related leaf traits in a deciduous forest. Oecologia 96, 169-178.
61. Engel GS, Calhoun TR, Read EL, Ahn T-K, Mancal T, Cheng Y-C, Blankenship RE, Fleming GR. 2007. Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems. Nature 446, 782-786.
62. Ensminger I, Busch F, Huner NPA. 2006. Photostasis and cold acclimation: sensing low temperature through photosynthesis. Physiologia Plantarum 126, 28-44.
63. Ensminger I, Sveshnikov D, Campbell DA, Funk C, Jansson S, Lloyd J, Shibistova O, Öquist G. 2004. Intermittent low temperatures constrain spring recovery of photosynthesis in boreal Scots pine forests. Global Change Biology 10, 995-1008.
64. Eskling M, Arvidsson P, Åkerlund H-E. 1997. The xanthophyll cycle, its regulation and components. Physiologia Plantarum 100, 806-816.
65. Esteban R, Fernández-Marín B, Hernandez A, et al. 2013. Salt crystal deposition as a reversible mechanism to enhance photoprotection in black mangrove. Trees 27, 229-237.
66. Evain S, Flexas J, Moya I. 2004. A new instrument for passive remote sensing: 2. Measurement of leaf and canopy refectance changes at 531 nm and their relationship with photosynthesis and chlorophyll fuorescence. Remote Sensing of Environment 91, 175-185.
67. Färber A, Young AJ, Ruban AV, Horton P, Jahns P. 1997. Dynamics of xanthophyll-cycle activity in different antenna subcomplexes in the photosynthetic membranes of higher plants: the relationship between zeaxanthin conversion and nonphotochemical fuorescence quenching. Plant Physiology 115, 1609-1618.
68. Filella I, Porcar-Castell A, Munné-Bosch S, Bäck J, Garbulsky M, Peñuelas J. 2009. PRI assessment of long-term changes in carotenoids/chlorophyll ratio and short-term changes in de-epoxidation state of the xanthophyll cycle. International Journal of Remote Sensing 30, 4443-4455.
69. Flexas J, Badger M, Chow WS, Medrano H, Osmond CB. 1999. Analysis of the relative increase in photosynthetic O(2) uptake when photosynthesis in grapevine leaves is inhibited following low night temperatures and/or water stress. Plant Physiology 121, 675-684.
70. Flexas J, Briantais J-M, Cerovic Z, Medrano H, Moya I. 2000. Steady-state and maximum chlorophyll fuorescence responses to water stress in grapevine leaves: a new remote sensing system. Remote Sensing of Environment 73, 283-297.
71. Flexas J, Galmes J, Ribas-Carbo M, Medrano H. 2005. The effects of water stress on plant respiration. In: Lambers H, Ribas-Carbó M, eds. Plant respiration: from cell to ecosystem. Advances in Photosynthesis and Respiration, Vol. 18. Dordrecht: Springer, 85-94.
72. Flexas J, Medrano H. 2002. Energy dissipation in C3 plants under drought. Functional Plant Biology 29, 1209-1215.
73. Franck F, Juneau P, Popovic R. 2002. Resolution of the photosystem I and photosystem II contributions to chlorophyll fuorescence of intact leaves at room temperature. Biochimica et Biophysica Acta 1556, 239-246.
74. Frankenberg C, Fisher JB, Worden J, et al. 2011. New global observations of the terrestrial carbon cycle from GOSAT: patterns of plant fuorescence with gross primary productivity. Geophysical Research Letters 38, L17706.
75. Frankenberg C, O'Dell C, Berry JA, Guanter L, Joiner J, Köhler P, Pollock R, Taylor TE. 2014. Prospects for chlorophyll fuorescence remote sensing from the Orbiting Carbon Observatory-2. Remote Sensing of Environment 147, 1-12.
76. Freedman A, Cavender-Bares J, Kebabian P, Bhaskar R, Scott H, Bazzaz FA. 2002. Remote sensing of solar-excited plant fuorescence as a measure of photosynthetic rate. Photosynthetica 40, 127-132.
77. Galmés J, Medrano H, Flexas J. 2007a. Photosynthesis and photoinhibition in response to drought in a pubescent (var. minor) and a glabrous (var. palaui) variety of Digitalis minor. Environmental and Experimental Botany 60, 105-111.
78. Galmés J, Ribas-Carbó M, Medrano H, Flexas J. 2007b. Response of leaf respiration to water stress in Mediterranean species with different growth forms. Journal of Arid Environments 68, 206-222.
79. Gamon JA, Field CB, Bilger W, Björkman O, Fredeen AL, Peñuelas J. 1990. Remote sensing of the xanthophyll cycle and chlorophyll fuorescence in sunfower leaves and canopies. Oecologia 85, 1-7.
80. Gamon JA, Penuelas J, Field CB. 1992. A narrow-waveband spectral index that tracks diurnal changes in photosynthetic effciency. Remote Sensing of Environment 41, 35-44.
81. Garbulsky MF, Peñuelas J, Papale D, Filella I. 2008. Remote estimation of carbon dioxide uptake by a Mediterranean forest. Global Change Biology 14, 2860-2867.
82. García-Plazaola JI, Becerril JM. 2001. Seasonal changes in photosynthetic pigments and antioxidants in beech (Fagus sylvatica) in a Mediterranean climate: implications for tree decline diagnosis. Australian Journal of Plant Physiology 28, 225-232.
83. García-Plazaola JI, Esteban R, Fernández-Marín B, Kranner I, Porcar-Castell A. 2012. Thermal energy dissipation and xanthophyll cycles beyond the Arabidopsis model. Photosynthesis Research 113, 89-103.
84. Gastellu-Etchegorry J, Martin E, Gascon F. 2004. DART: a 3D model for simulating satellite images and studying surface radiation budget. International Journal of Remote Sensing 25, 73-96.
85. Genty B, Briantais J-M, Baker NR. 1989. The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fuorescence. Biochimica et Biophysica Acta 990, 87-92.
86. Genty B, Harbinson J, Baker NR. 1990a. Relative quantum effciencies of the two photosystems of leaves in photorespiratory and non-respiratory conditions. Plant Physiology and Biochemistry (Paris) 28, 1-10.
87. 0 in leaves is emission wavelength dependent: consequences for quenching analysis and its interpretation. Photosynthesis Research 26, 133-139.
88. Gillbro T, Cogdell RJ. 1989. Carotenoid fuorescence. Chemical Physics Letters 158, 312-316.
89. Gilmore AM, Ball MC. 2000. Protection and storage of chlorophyll in overwintering evergreens. Proceedings of the National Academy of Sciences, USA 97, 11098-11101.
90. Gilmore AM, Hazlett TL, Govindjee. 1995. Xanthophyll cycle-dependent quenching of photosystem II chlorophyll a fuorescence: formation of a quenching complex with a short fuorescence lifetime. Proceedings of the National Academy of Sciences, USA 92, 2273-2277.
91. Gitelson AA, Buschmann C, Lichtenthaler HK. 1998. Leaf chlorophyll fuorescence corrected for re-absorption by means of absorption and refectance measurements. Journal of Plant Physiology 152, 283-296.
92. Gobets B, van Grondelle R. 2001. Energy transfer and trapping in photosystem I. Biochimica et Biophysica Acta 1507, 80-99.
93. Goerner A, Reichstein M, Tomelleri E, Hanan N, Rambal S, Papale D, Dragoni D, Schmullius C. 2011. Remote sensing of ecosystem light use effciency with MODIS-based PRI. Biogeosciences 8, 189-202.
94. Goudriaan J. 1988. The bare bones of leaf-angle distribution in radiation models for canopy photosynthesis and energy exchange. Agricultural and Forest Meteorology 43, 155-169.
95. Goulden ML, Munger JW, Fan S-M, Daube BC, Wofsy SC. 1996. Measurements of carbon sequestration by long-term eddy covariance: methods and a critical evaluation of accuracy. Global Change Biology 2, 169-182.
96. Govindjee. 1995. Sixty-three years since Kautsky: chlorophyll-a fuorescence. Australian Journal of Plant Physiology 22, 131-160.
97. Govindjee. 2004. Chlorophyll a fuorescence: a bit of basics and history. In: Papageorgiou GC, Govinjee, ed. Chlorophyll a fuorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 1-42.
98. Govindjee, Yang L. 1966. Structure of the red fuorescence band in chloroplasts. Journal of General Physiology 49, 763-780.
99. Grace J, Nichol C, Disney M, Lewis P, Quaife T, Bowyer P. 2007. Can we measure terrestrial photosynthesis from space directly, using spectral refectance and fuorescence? Global Change Biology 13, 1484-1497.
100. Greer DH, Berry JA, Björkman O. 1986. Photoinhibition of photosynthesis in intact bean leaves: role of light and temperature, and requirement for chloroplast-protein synthesis during recovery. Planta 168, 253-260.
101. Guanter L, Alonso L, Gómez-Chova L, Amorós-López J, Vila J, Moreno J. 2007. Estimation of solar-induced vegetation fuorescence from space measurements. Geophysical Research Letters 34, L08401.
102. Guanter L, Frankenberg C, Dudhia A, Lewis PE, Gómez-Dans J, Kuze A, Suto H, Grainger RG. 2012. Retrieval and global assessment of terrestrial chlorophyll fuorescence from GOSAT space measurements. Remote Sensing of Environment 121, 236-251.
103. Guanter L, Rossini M, Colombo R, Meroni M, Frankenberg C, Lee JL, Joiner J. 2013. Using feld spectroscopy to assess the potential of statistical approaches for the retrieval of sun-induced chlorophyll fuorescence from ground and space. Remote Sensing of Environment 133, 52-61.
104. Gylle MA, Rantamäki S, Ekelund NGA, Tyystjärvi E. 2012. Fluorescence emission spectra of marine and brackish-water ecotypes of Fucus vesiculosus and Fucus radicans (Phaeophyceae) reveal differences in light-harvesting apparatus. Photochemistry and Photobiology 88, 1455-1460.
105. Haboudane D, Miller JR, Tremblay N, Zarco-Tejada PJ, Dextraze L. 2002. Integrated narrow-band vegetation indices for prediction of crop chlorophyll content for application to precision agriculture. Remote Sensing of Environment 81, 416-426.
106. Haldrup A, Jensen PE, Lunde C, Scheller HV. 2001. Balance of power: a view of the mechanism of photosynthetic state transitions. Trends in Plant Science 6, 301-305.
107. 4 photosynthesis: an unlikely process full of surprises. Plant and Cell Physiology 33, 333-342.
108. Havaux M, Strasser RJ, Greppin H. 1991. A theoretical and experimental analysis of the qP and qN coeffcients of chlorophyll fuorescence quenching and their relation to photochemical and nonphotochemical events. Photosynthesis Research 27, 41-55.
109. Heinsch FA, Zhao M, Running SW, et al. 2006. Evaluation of remote sensing based terrestrial productivity from MODIS using regional tower eddy fux network observations. IEEE Transactions on Geoscience and Remote Sensing 44, 1908-1925.
110. Hihara Y, Sonoike K. 2001. Regulation, inhibition and protection of photosystem I. In: Aro E-M, Andersson B. eds. Regulation of photosynthesis. Dordrecht: Kluwer Academic Publishers, 507-531.
111. Hilker T, Coops NC, Wulder MA, Black TA, Guy RD. 2008. The use of remote sensing in light use effciency based models of gross primary production: a review of current status and future requirements. Science of the Total Environment 404, 411-423.
112. Hlavinka J, Nau J, Špundová M. 2013. Anthocyanin contribution to chlorophyll meter readings and its correction. Photosynthesis Research 118, 277-295.
113. Hoff AJ. 1986. Triplets: phosphorescence and magnetic resonance. In: Govindjee, Amesz J, Fork DC, eds. Light emission by plants and bacteria. Orlando: Academic Press, 225-289.
114. Holt NE, Zigmantas D, Valkunas L, Li X-P, Niyogi KK, Fleming GR. 2005. Carotenoid cation formation and the regulation of photosynthetic light harvesting. Science 307, 433-436.
115. Horton P, Hague A. 1988. Studies on the induction of chlorophyll fuorescence in isolated barley protoplasts. I V. Resolution of non-photochemical quenching. Biochimica et Biophysica Acta 932, 107-115.
116. Horton P, Ruban AV, Walters RG. 1996. Regulation of light harvesting in green plants. Annual Review of Plant Biology and Plant Molecular Biology 47, 655-684.
117. Huete A. 1988. A soil-adjusted vegetation index (SAVI). Remote Sensing of Environment 2, 295-309.
118. Huete A, Liu H, Batchily K, Van Leeuwen W. 1997. A comparison of vegetation indices over a global set of TM images for EOS-MODIS. Remote Sensing of Environment 59, 440-451.
119. Huner NPA, Maxwell DP, Gray GR, Savitch LV, Krol M, Ivanov AG, Falk S. 1996. Sensing environmental temperature change through imbalances between energy supply and energy consumption: redox state of photosystem II. Physiologia Plantarum 98, 358-364.
120. Ilík P, Vystrcilová M, Nau J, Kalina J. 1997. Chlorophyll fuorescence temperature curves of spruce needles from different whorls of the tree. Photosynthetica 34, 477-480.
121. Ivanov AG, Sane PV, Hurry V, Öquist G, Huner NPA. 2008. Photosystem II reaction centre quenching: mechanisms and physiological role. Photosynthesis Research 98, 565-574.
122. Ivanov AG, Sane PV, Zeinalov Y, Malmberg G, Gardeström P, Huner NPA, Öquist G. 2001. Photosynthetic electron transport adjustments in overwintering Scots pine (Pinus sylvestris L.). Planta 213, 575-585.
123. Ivanov AG, Sane PV, Zeinalov Y, Simidjiev I, Huner NPA, Öquist G. 2002. Seasonal responses of photosynthetic electron transport in Scots pine (Pinus sylvestris L.) studied by thermoluminescence. Planta 215, 457-465.
124. Jahns P, Holzwarth AR. 2012. The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II. Biochimica et Biophysica Acta 1817, 182-193.
125. Jennings RC, Zucchelli G, Croce R, Garlaschi FM. 2003. The photochemical trapping rate from red spectral states in PSI-LHCI is determined by thermal activation of energy transfer to bulk chlorophylls. Biochimica et Biophysica Acta 1557, 91-98.
126. Joiner J, Guanter L, Lindstrot R, Voigt M, Vasilkov AP, Middleton EM, Huemmrich KF, Yoshida Y, Frankenberg C. 2013. Global monitoring of terrestrial chlorophyll fuorescence from moderate spectral resolution near-infrared satellite measurements: methodology, simulations, and application to GOME-2. Atmospheric Measurement Techniques Discussions 6, 3883-3930.
127. Joiner J, Yoshida Y, Vasilkov AP, Yoshida Y, Corp LA, Middleton E. 2011. First observations of global and seasonal terrestrial chlorophyll fuorescence from space. Biogeosciences 8, 637-651.
128. Joliot A, Joliot P. 1964. Etude cinétique de la réaction photochimique libérant l'oxygène au cours de la photosynthèse. Comptes Rendus de l'Académie des Sciences 258, 4622-4625.
129. Joliot P, Joliot A. 2002. Cyclic electron transfer in plant leaf. Proceedings of the National Academy of Sciences, USA 99, 10209-10214.
130. Jung M, Reichstein M, Margolis HA, et al. 2011. Global patterns of land-atmosphere fuxes of carbon dioxide, latent heat, and sensible heat derived from eddy covariance, satellite, and meteorological observations. Journal of Geophysical Research G: Biogeosciences 116, G00J07.
131. Keränen M, Aro E-M, Tyystjärvi E. 1999. Excitation-emission map as a tool in studies of photosynthetic pigment-protein complexes. Photosynthetica 37, 225-237.
132. Kitajima M, Butler WL. 1975a. Quenching of chlorophyll fuorescence and primary photochemistry in chloroplasts by dibromothymoquinone. Biochimica et Biophysica Acta 376, 105-115.
133. Kitajima M, Butler WL. 1975b. Excitation spectra for photosystem I and photosystem II in chloroplasts and the spectral characteristics of the distribution of quanta between the two photosystems. Biochimica et Biophysica Acta 408, 297-305.
134. Kok B. 1956. On the inhibition of photosynthesis by intense light. Biochimica et Biophysica Acta 21, 234-244.
135. Kolari P, Lappalainen HK, Hänninen H, Hari P. 2007. Relationship between temperature and the seasonal course of photosynthesis in Scots pine at northern timberline and in southern boreal zone. Tellus B 59, 542-552.
136. Kolber Z, Klimov D, Ananyev G, Rascher U, Berry J, Osmond B. 2005. Measuring photosynthetic parameters at a distance: laser induced fuorescence transient (LIFT) method for remote measurements of photosynthesis in terrestrial vegetation. Photosynthesis Research 84, 121-129.
137. Kraft S, Del Bello U, Drusch M, Gabriele A, Harnisch B, Moreno J. 2013. On the demands on imaging spectrometry for the monitoring of global vegetation fuorescence from space. SPIE Proceedings 8870, 88700N-12.
138. Krall J P, Edwards GE. 1992. Relationship between photosystem II activity and CO2 fxation in leaves. Physiologia Plantarum 86, 180-187.
139. Kramer DM, Avenson TJ, Edwards GE. 2004a. Dynamic fexibility in the light reactions of photosynthesis governed by both electron and proton transfer reactions. Trends in Plant Science 9, 349-357.
140. Kramer DM, Johnson G, Kiirats O, Edwards GE. 2004b. New fuorescence parameters for the determination of QA redox state and excitation energy fuxes. Photosynthesis Research 79, 209-218.
141. Krause GH. 1988. Photoinhibition of photosynthesis. An evaluation of damaging and protective mechanisms. Physiologia Plantarum 74, 566-574.
142. Krause GH, Jahns P. 2004. Non-photochemical energy dissipation determined by chlorophyll fuorescence quenching: characterization and function. In: Papageorgiou GC, Govindjee, eds. Chlorophyll a fuorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 463-495.
143. Krause G, Weis E. 1991. Chlorophyll fuorescence and photosynthesis: the basics. Annual Review of Plant Biology 42, 313-349.
144. Krivosheeva A, Tao D, Ottander C, Wingsle G, Dube SL, Öquist G. 1996. Cold acclimation and photoinhibition of photosynthesis in Scots pine. Planta 200, 296-305.
145. Kumar M, Monteith JL. 1981. Remote sensing of crop growth. In: Smith H, ed. Plants and the daylight spectrum. London: Academic Press, 133-144.
146. Kuropatwa R, Naus J, Klinkovsky T, Ilik P, Kalina J, Maslan M, Zak D, Lattova J, Pavlova Z. 1992. The chlorophyll fuorescence temperature curve as a plant damage and light acclimation diagnostic tool. In: Murata N, ed. Research in photosynthesis, Vol. 4. Dordrecht: Kluwer Academic Publishers, 177-180.
147. Kyle DJ, Haworth P, Arntzen C. 1982. Thylakoid membrane protein phosphorylation leads to a decrease in connectivity between photosystem II reaction centers. Biochimica et Biophysica Acta 680, 336-342.
148. Laisk A, Oja V, Rasulov B, Eichelmann H, Sumberg A. 1997. Quantum yields and rate constants of photochemical and nonphotochemical excitation quenching. Experiment and model. Plant Physiology 115, 803-815.
149. Laisk A, Oja V, Rasulov B, Rämma H, Eichelmann H, Kasparova I, Pettai H, Padu E, Vapaavuori E. 2002. A computer-operated routine of gas exchange and optical measurements to diagnose photosynthetic apparatus in leaves. Plant, Cell and Environment 25, 923-943.
150. Latimer P, Bannister TT, Rabinowitch E. 1956. Quantum yields of fuorescence of plant pigments. Science 124, 585-586.
151. Laureau C, de Paepe R, Latouche G, Moreno-Chacón M, Finazzi G, Kuntz M, Cornic G, Streb P. 2013. Plastid terminal oxidase (PTOX) has the potential to act as a safety valve for excess excitation energy in the alpine plant species Ranunculus glacialis L. Plant, Cell and Environment 36, 1296-1310.
152. Lavergne J, Trissl H-W. 1995. Theory of fuorescence induction in photosystem II: derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photosynthetic units. Biophysical Journal 68, 2474-2492.
153. Lazár D. 1999. Chlorophyll a fuorescence induction. Biochimica et Biophysica Acta 1412, 1-28.
154. Lee AI, Thornber JP. 1995. Analysis of the pigment stoichiometry of pigment-protein complexes from barley (Hordeum vulgare). The xanthophyll cycle intermediates occur mainly in the light-harvesting complexes of photosystem I and photosystem II. Plant Physiology 107, 565-574.
155. Lee J-E, Frankenberg C, van der Tol C, et al. 2013. Forest productivity and water stress in Amazonia: observations from GOSAT chlorophyll fuorescence. Proceedings of the Royal Society B: Biological Sciences 280, 20130171.
156. Lichtenthaler HK, Rinderle U. 1988. The role of chlorophyll fuorescence in the detection of stress conditions in plants. CRC Critical Reviews in Analytical Chemistry 19, S29-S85.
157. Liu Z, Yan H, Wang K, Kuang T, Zhang J, Gui L, An X, Chang W. 2004. Crystal structure of spinach major light-harvesting complex at 2.72 Å resolution. Nature 428, 287-292.
158. Logan BA, Adams III WW, Demmig-Adams B. 2007. Avoiding common pitfalls of chlorophyll fuorescence analysis under feld conditions. Functional Plant Biology 34, 853-859.
159. Long SP, Bernacchi CJ. 2003. Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error. Journal of Experimental Botany 54, 2393-2401.
160. Lu C, Lu Q, Zhang J, Kuang T. 2001. Characterization of photosynthetic pigment composition, photosystem II photochemistry and thermal energy dissipation during leaf senescence of wheat plants grown in the feld. Journal of Experimental Botany 52, 1805-1810.
161. Malenovský Z, Mishra KB, Zemek F, Rascher U, Nedbal L. 2009. Scientifc and technical challenges in remote sensing of plant canopy refectance and fuorescence. Journal of Experimental Botany 60, 2987-3004.
162. Martin B, Mårtensson O, Öquist G. 1978. Seasonal effects on photosynthetic electron transport and fuorescence properties in isolated chloroplasts of Pinus sylvestris. Physiologia Plantarum 44, 102-109.
163. Matsubara S, Chow WS. 2004. Populations of photoinactivated photosystem II reaction centers characterized by chlorophyll a fuorescence lifetime in vivo. Proceedings of the National Academy of Sciences, USA 101, 18234-18239.
164. Maxwell K, Johnson GN. 2000. Chlorophyll fuorescence-a practical guide. Journal of Experimental Botany 51, 659-668.
165. Mehta P, Allakhverdiev SI, Jajoo A. 2010. Characterization of photosystem II heterogeneity in response to high salt stress in wheat leaves (Triticum aestivum). Photosynthesis Research 105, 249-255.
166. Melis A. 1991. Dynamics of photosynthetic membrane composition and function. Biochimica et Biophysica Acta 1058, 87-106.
167. Meroni M, Rossini M, Guanter L, Alonso L, Rascher U, Colombo R, Moreno J. 2009. Remote sensing of solar-induced chlorophyll fuorescence: review of methods and applications. Remote Sensing of Environment 113, 2037-2051.
168. Merzlyak MN, Chivkunova OB, Solovchenko AE, Naqvi KR. 2008. Light absorption by anthocyanins in juvenile, stressed, and senescing leaves. Journal of Experimental Botany 59, 3903-3911.
169. Miller J, Berger M, Goulas Y, et al. 2005. Development of vegetation fuorescence canopy model. ESTEC Contract No. 16365/02/NL/FF, Final Report.
170. Miloslavina Y, Szczepaniak M, Müller M, Sander J, Nowaczyk M, Rögner M, Holzwarth A. 2006. Charge separation kinetics in intact photosystem II core particles is trap-limited. A picosecond fuorescence study. Biochemistry 45, 2436-2442.
171. Monteith JL. 1972. Solar radiation and productivity in tropical ecosystems. Journal of Applied Ecology 9, 747-766.
172. Mooney HA, Ehleringer J, Björkman O. 1977. The energy balance of leaves of the evergreen desert shrub Atriplex hymenelytra. Oecologia 29, 301-310.
173. Morales F, Abadía A, Abadía J, Montserrat G, Gil-Pelegrín E. 2002. Trichomes and photosynthetic pigment composition changes: responses of Quercus ilex subsp. ballota (Desf.) Samp. and Quercus coccifera L. to Mediterranean stress conditions. Trees 16, 504-510.
174. Moreno J, Asner GP, Bach H, et al. 2006. Fluorescence explorer (FLEX): an optimized payload to map vegetation photosynthesis from space. In: AIAA 57th International Astronautical Congress, Vol, 3. Valencia: IAC, 2065-2074.
175. Morton DC, Nagol J, Carabajal CC, Rosette J, Palace M, Cook BD, Vermote EF, Harding DJ, North PR. 2014. Amazon forests maintain consistent canopy structure and greenness during the dry season. Nature 506, 221-224.
176. Moya I, Camenen L, Evain S, Goulas Y, Cerovic ZG, Latouche G, Flexas J, Ounis A. 2004. A new instrument for passive remote sensing: 1. Measurements of sunlight-induced chlorophyll fuorescence. Remote Sensing of Environment 91, 186-197.
177. Müller P, Li X-P, Niyogi KK. 2001. Non-photochemical quenching. A response to excess light energy. Plant Physiology 125, 1558-1566.
178. Murata N. 1969. Control of excitation transfer in photosynthesis. 1. Light-induced change of chlorophyll a fuorescence in Porphyridium cruentum. Biochimica et Biophysica Acta 172, 242-251.
179. Nedbal L, Szöcs V. 1986. How long does excitonic motion in the photosynthetic unit remain coherent? Journal of Theoretical Biology 120, 411-418.
180. Nichol CJ, Rascher U, Matsubara S, Osmond B. 2006. Assessing photosynthetic effciency in an experimental mangrove canopy using remote sensing and chlorophyll fuorescence. Trees 20, 9-15.
181. Nield J, Barber J. 2006. Refnement of the structural model for the Photosystem II supercomplex of higher plants. Biochimica et Biophysica Acta 1757, 353-361.
182. Niinemets Ü, Kollist H, García-Plazaola JI, Hernández A, Becerril JM. 2003. Do the capacity and kinetics for modifcation of xanthophyll cycle pool size depend on growth irradiance in temperate trees? Plant, Cell and Environment 26, 1787-1801.
183. Nilkens M, Kress E, Lambrev P, Miloslavina Y, Müller M, Holzwarth AR, Jahns P. 2010. Identifcation of a slowly inducible zeaxanthin-dependent component of non-photochemical quenching of chlorophyll fuorescence generated under steady-state conditions in Arabidopsis. Biochimica et Biophysica Acta 1797, 466-475.
184. Nixon PJ. 2000. Chlororespiration. Philosophical Transactions of the Royal Society B: Biological Sciences 355, 1541-1547.
185. Novoderezhkin VI, van Grondelle R. 2010. Physical origins and models of energy transfer in photosynthetic light-harvesting. Physical Chemistry Chemical Physics 12, 7352-7365.
186. Ogaya R, Peñuelas J. 2003. Comparative seasonal gas exchange and chlorophyll fuorescence of two dominant woody species in a Holm Oak Forest. Flora 198, 132-141.
187. Ögren E, Öquist G, Hällgren J-E. 1984. Photoinhibition of photosynthesis in Lemna gibba as induced by the interaction between light and temperature. III. Chlorophyll fuorescence at 77 K. Physiologia Plantarum 62, 193-200.
188. Ogren WL. 1984. Photorespiration: pathways, regulation, and modifcation. Annual Review of Plant Physiology 35, 415-442.
189. Ohad I, Kyle DJ, Arntzen CJ. 1984. Membrane protein damage and repair: removal and replacement of inactivated 32-kilodalton polypeptides in chloroplast membranes. Journal of Cell Biology 99, 481-485.
190. Oja V, Laisk A. 2012. Photosystem II antennae are not energetically connected: evidence based on fash-induced O2 evolution and chlorophyll fuorescence in sunfower leaves. Photosynthesis Research 114, 15-28.
191. Olascoaga B, Juurola E, Pinho P, Lukes P, Halonen L, Nikinmaa E, Bäck J, Porcar-Castell A. 2014. Seasonal variation in the refectance of photosynthetically active radiation from epicuticular waxes of Scots pine (Pinus sylvestris) needles. Boreal Environment Research (in press).
192. Ort DR, Yocum CF, eds. 1996. Oxygenic photosynthesis: the light reactions. Advances in Photosynthesis, Vol. 4. Dordrecht: Kluwer Academic Publishers.
193. Ottander C, Campbell D, Öquist G. 1995. Seasonal changes in photosystem II organisation and pigment composition in Pinus sylvestris. Planta 197, 176-183.
194. Ottander C, Öquist G. 1991. Recovery of photosynthesis in winter-stressed Scots pine. Plant, Cell and Environment 14, 345-349.
195. Owens TG, Shreve AP, Albert AC. 1992. Dynamics and mechanisms of singlet energy transfer between carotenoids and chlorophylls: light harvesting and non-photochemical fuorescence quenching. In: Murata N, ed. Research in photosynthesis, Vol. I. Dordrecht: Kluwer Academic Publishers, 179-186.
196. Palombi L, Cecchi G, Lognoli D, Raimondi V, Toci G, Agati G. 2011. A retrieval algorithm to evaluate the Photosystem I and Photosystem II spectral contributions to leaf chlorophyll fuorescence at physiological temperatures. Photosynthesis Research 108, 225-239.
197. Pedrós R, Goulas Y, Jacquemoud S, Louis J, Moya I. 2010. FluorMODleaf: a new leaf fuorescence emission model based on the PROSPECT model. Remote Sensing of Environment 114, 155-167.
198. Pedrós R, Moya I, Goulas Y, Jacquemoud S. 2008. Chlorophyll fuorescence emission spectrum inside a leaf. Photochemical and Photobiological Sciences 7, 498-502.
199. Peterson RB, Oja V, Laisk A. 2001. Chlorophyll fuorescence at 680 and 730 nm and leaf photosynthesis. Photosynthesis Research 70, 185-196.
200. Pfannschmidt T, Nilsson A, Allen J F. 1999. Photosynthetic control of chloroplast gene expression. Nature 397, 625-628.
201. Pfündel E. 1998. Estimating the contribution of photosystem I to total leaf chlorophyll fuorescence. Photosynthesis Research 56, 185-195.
202. Pfündel EE. 2009. Deriving room temperature excitation spectra for photosystem I and photosystem II fuorescence in intact leaves from the dependence of F V/F M on excitation wavelength. Photosynthesis Research 100, 163-177.
203. Pfündel EE, Agati G, Cerovic ZG. 2006. Optical properties of plant surfaces. In: Riederer M, Muller C, eds. Biology of the plant cuticle. Annual Plant Reviews, Vol. 23. Oxford: Blackwell Publishing, 216-249.
204. Pfündel EE, Klughammer C, Meister A, Cerovic ZG. 2013. Deriving fuorometer-specifc values of relative PSI fuorescence intensity from quenching of F0 fuorescence in leaves of Arabidopsis thaliana and Zea mays. Photosynthesis Research 113, 189-206.
205. Pieruschka R, Klimov D, Kolber ZS, Berry JA. 2010. Monitoring of cold and light stress impact on photosynthesis by using the laser induced fuorescence transient (LIFT) approach. Functional Plant Biology 37, 395-402.
206. Plascyk JA. 1975. The MkII Fraunhofer line discriminator (FLD-II) for airborne and orbital remote sensing of solar-stimulated luminescence. Optical Engineering 14, 339-330.
207. Porcar-Castell A. 2011. A high-resolution portrait of the annual dynamics of photochemical and non-photochemical quenching in needles of Pinus sylvestris. Physiologia Plantarum 143, 139-153.
208. Porcar-Castell A, Bäck J, Juurola E, Hari P. 2006. Dynamics of the energy fow through photosystem II under changing light conditions: a model approach. Functional Plant Biology 33, 229-239.
209. Porcar-Castell A, Garcia-Plazaola JI, Nichol CJ, Kolari P, Olascoaga B, Kuusinen N, Fernández-Marín B, Pulkkinen M, Juurola E, Nikinmaa E. 2012. Physiology of the seasonal relationship between the photochemical refectance index and photosynthetic light use effciency. Oecologia 170, 313-323.
210. Porcar-Castell A, Juurola E, Ensminger I, Berninger F, Hari P, Nikinmaa E. 2008a. Seasonal acclimation of photosystem II in Pinus sylvestris. II. Using the rate constants of sustained thermal energy dissipation and photochemistry to study the effect of the light environment. Tree Physiology 28, 1483-1491.
211. Porcar-Castell A, Juurola E, Nikinmaa E, Berninger F, Ensminger I, Hari P. 2008b. Seasonal acclimation of photosystem II in Pinus sylvestris. I. Estimating the rate constants of sustained thermal energy dissipation and photochemistry. Tree Physiology 28, 1475-1482.
212. Porcar-Castell A, Pfündel E, Korhonen JFJ, Juurola E. 2008c. A new monitoring PAM fuorometer (MONI-PAM) to study the short-and long-term acclimation of photosystem II in feld conditions. PhotosynthesisResearch 96, 173-179.
213. M chlorophyll fuorescence in vivo. Biochimica et Biophysica Acta 1363, 95-99.
214. Qi J, Chehbouni A, Huete AR, Kerr YH, Sorooshian S. 1994. A modifed soil adjusted vegetation index. Remote Sensing of Environment 48, 119-126.
215. Rappaport F, Béal D, Joliot A, Joliot P. 2007. On the advantages of using green light to study fuorescence yield changes in leaves. Biochimica et Biophysica Acta 1767, 56-65.
216. Rascher U, Agati G, Alonso L, et al. 2009. CEFLES2: the remote sensing component to quantify photosynthetic effciency from the leaf to the region by measuring sun-induced fuorescence in the oxygen absorption bands. Biogeosciences Discussions 6, 1181-1198.
217. Richardson AD, Berlyn GP. 2002. Changes in foliar spectral refectance and chlorophyll fuorescence of four temperate species following branch cutting. Tree Physiology 22, 499-506.
218. Rintamäki E, Salonen M, Suoranta U-M, Carlberg I, Andersson B, Aro E-M. 1997. Phosphorylation of light-harvesting complex II and photosystem II core proteins shows different irradiance-dependent regulation in vivo. Journal of Biological Chemistry 272, 30476-30482.
219. Rivadossi A, Zucchelli G, Garlaschi FM, Jennings RC. 1999. The importance of PS I chlorophyll red forms in light-harvesting by leaves. Photosynthesis Research 60, 209-215.
220. Roelofs TA, Lee C, Holzwarth AR. 1992. Global target analysis of picosecond chlorophyll fuorescence kinetics from pea chloroplasts: a new approach to the characterization of the primary processes in photosystem II α-and β-units. Biophysical Journal 61, 1147-1163.
221. Rohácek K. 2002. Chlorophyll fuorescence parameters: the defnitions, photosynthetic meaning, and mutual relationships. Photosynthetica 40, 13-29.
222. Rosema A, Snel JFH, Zahn H, Buurmeijer WF, van Hove LWA. 1998. The relation between laser-induced chlorophyll fuorescence and photosynthesis. Remote Sensing of Environment 65, 143-154.
223. Rossini M, Meroni M, Migliavacca M, Manca G, Cogliati S, Busetto L, Picchi V, Cescatti A, Seufert G, Colombo R. 2010. High resolution feld spectroscopy measurements for estimating gross ecosystem production in a rice feld. Agricultural and Forest Meteorology 150, 1283-1296.
224. Rouse JW Jr, Haas RH, Schell JA, Deering DW. 1974. Monitoring vegetation systems in the Great Plains with ERTS. In: Stanley CF, Mercanti E P, Becker MA, eds. Third Earth resources technology satellite-1 Symposium-Volume I: technical presentations. NASA special publication 351, 309.
225. Rumeau D, Peltier G, Cournac L. 2007. Chlororespiration and cyclic electron fow around PSI during photosynthesis and plant stress response. Plant, Cell and Environment 30, 1041-1051.
226. Ryu Y, Baldocchi DD, Kobayashi H, Ingen C, Li J, Black TA, Beringer J, Gorsel E, Knohl A, Law BE, Roupsard O. 2011. Integration of MODIS land and atmosphere products with a coupled-process model to estimate gross primary productivity and evapotranspiration from 1 km to global scales. Global Biogeochemical Cycles 25, GB4017.
227. Santabarbara S, Agostini G, Casazza AP, Syme CD, Heathcote P, Böhles F, Evans MC, Jennings RC, Carbonera D. 2007. Chlorophyll triplet states associated with Photosystem I and Photosystem II in thylakoids of the green alga Chlamydomonas reinhardtii. Biochimica et Biophysica Acta 1767, 88-105.
228. Sarvikas P, Hakala-Yatkin M, Dönmez S, Tyystjärvi E. 2010. Short fashes and continuous light have similar photoinhibitory effciency in intact leaves. Journal of Experimental Botany 61, 4239-4247.
229. Schatz GH, Brock H, Holzwarth AR. 1988. Kinetic and energetic model for the primary processes in photosystem II. Biophysical Journal 54, 397-405.
230. Schreiber U, Schliwa U, Bilger W. 1986. Continuous recording of photochemical and non-photochemical chlorophyll fuorescence quenching with a new type of modulation fuorometer. Photosynthesis Research 10, 51-62.
231. Schreiber U. 2004. Pulse-amplitude-modulation (PAM) fuorometry and saturation pulse method: an overview. In: Papageorgiou GC, Govindjee, eds. Chlorophyll a fuorescence, a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19. Dordrecht: Springer, 279-319.
232. Sellers PJ. 1985. Canopy refectance, photosynthesis and transpiration. International Journal of Remote Sensing 6, 1335-1372.
233. Shinkarev VP, Govindjee. 1993. Insight into the relationship of chlorophyll a fuorescence yield to the concentration of its natural quenchers in oxygenic photosynthesis. Proceedings of the National Academy of Sciences, USA 90, 7466-7469.
234. 2 exchange in response to drought in a Southern California chaparral ecosystem. Remote Sensing of Environment 103, 289-303.
235. Sonoike K. 2011. Photoinhibition of photosystem I. Physiologia Plantarum 142, 56-64.
236. Soukupová J, Cséfalvay L, Urban O, Kovancová M, Marek M, Rascher U, Nedbal L. 2008. Annual variation of the steady-state chlorophyll fuorescence emission of evergreen plants in temperate zone. Functional Plant Biology 35, 63-76.
237. Stirbet A. 2013. Excitonic connectivity between photosystem II units: what is it, and how to measure it? Photosynthesis Research 116, 189-214.
238. Strand M, Lundmark T. 1987. Effects of low night temperature and light on chlorophyll fuorescence of feld-grown seedlings of Scots pine (Pinus sylvestris L.). Tree Physiology 3, 211-224.
239. Stylinski CD, Gamon JA, Oechel WC. 2002. Seasonal patterns of refectance indices, carotenoid pigments and photosynthesis of evergreen chaparral species. Oecologia 131, 366-374.
240. Tan X, Xu D, Shen Y. 1998. Both spillover and light absorption cross-section changes are involved in the regulation of excitation energy distribution between the two photosystems during state transitions in wheat leaf. Photosynthesis Research 56, 95-102.
241. Thayer SS, Björkman O. 1992. Carotenoid distribution and deepoxidation in thylakoid pigment-protein complexes from cotton leaves and bundle-sheath cells of maize. Photosynthesis Research 33, 213-225.
242. Tikkanen M, Grieco M, Aro E-M. 2011. Novel insights into plant light-harvesting complex II phosphorylation and 'state transitions'. Trends in Plant Science 16, 126-131.
243. Trissl H-W, Wilhelm C. 1993. Why do thylakoid membranes from higher plants form grana stacks? Trends in Biochemical Sciences 18, 415-419.
244. Tyystjärvi E. 2004. Phototoxicity. In: Noodén LD, ed. Plant cell death processes. San Diego: Academic Press, 271-283.
245. Tyystjarvi E. 2013. Photoinhibition of Photosystem II. International Review of Cell and Molecular Biology 300, 243-303.
246. Tyystjarvi E, Aro E-M. 1996. The rate constant of photoinhibition, measured in lincomycin-treated leaves, is directly proportional to light intensity. Proceedings of the National Academy of Sciences, USA 93, 2213-2218.
247. Tyystjärvi E, Rantamäki S, Tyystjärvi J. 2009. Connectivity of photosystem II is the physical basis of retrapping in photosynthetic thermoluminescence. Biophysical Journal 96, 3735-3743.
248. van der Tol C, Verhoef W, Timmermans J, Verhoef A, Su Z. 2009. An integrated model of soil-canopy spectral radiances, photosynthesis, fuorescence, temperature and energy balance. Biogeosciences 6, 3109-3129.
249. van Grondelle R, Novoderezhkin VI. 2006. Energy transfer in photosynthesis: experimental insights and quantitative models. Physical Chemistry Chemical Physics 8, 793-807.
250. van Kooten O, Snel JF. 1990. The use of chlorophyll fuorescence nomenclature in plant stress physiology. Photosynthesis Research 25, 147-150.
251. Vassiliev S, Bruce D. 2008. Toward understanding molecular mechanisms of light harvesting and charge separation in photosystem II. Photosynthesis Research 97, 75-89.
252. Verhoef W. 1984. Light scattering by leaf layers with application to canopy refectance modeling: the SAIL model. Remote Sensing of Environment 16, 125-141.
253. Verhoeven A. 2014. Sustained energy dissipation in winter evergreens. New Phytologist 201, 57-65.
254. Verhoeven AS, Adams WW III, Demmig-Adams B. 1996. Close relationship between the state of the xanthophyll cycle pigments and photosystem II effciency during recovery from winter stress. Physiologia Plantarum 96, 567-576.
255. Vernotte C, Etienne AL, Briantais JM. 1979. Quenching of the system II chlorophyll fuorescence by the plastoquinone pool. Biochimica et Biophysica Acta 545, 519-527.
256. Vogelmann TC. 1993. Plant tissue optics. Annual Review of Plant Biology 44, 231-251.
257. Vogelmann TC, Evans JR. 2002. Profles of light absorption and chlorophyll within spinach leaves from chlorophyll fuorescence. Plant, Cell and Environment 25, 1313-1323.
258. Walters RG. 2005. Towards an understanding of photosynthetic acclimation. Journal of Experimental Botany 56, 435-447.
259. Weis E, Berry JA. 1987. Quantum effciency of photosystem II in relation to 'energy'-dependent quenching of chlorophyll fuorescence. Biochimica et Biophysica Acta 894, 198-208.
260. Weis E, Berry JA. 1988. Plants and high temperature stress. In: Long SP, Woodward FI, eds. Plants and temperature. Symposium No 42. Cambridge: Society of Experimental Biology, 329-346.
261. Williams M, Richardson AD, Reichstein M, et al. 2009. Improving land surface models with FLUXNET data. Biogeosciences 6, 1341-1359.
262. Xiao X, Zhang Q, Braswell B, Urbanski S, Boles S, Wofsy S, Moore B III, Ojima D. 2004. Modeling gross primary production of temperate deciduous broadleaf forest using satellite images and climate data. Remote Sensing of Environment 91, 256-270.
263. Yu F, Berg VS. 1994. Control of paraheliotropism in two Phaseolus species. Plant Physiology 106, 1567-1573.
264. Zarco-Tejada PJ, Berni JA, Suárez L, Sepulcre-Cantó G, Morales F, Miller J. 2009. Imaging chlorophyll fuorescence with an airborne narrow-band multispectral camera for vegetation stress detection. Remote Sensing of Environment 113, 1262-1275.
265. Zarco-Tejada PJ, Catalina A, González M, Martín P. 2013. Relationships between net photosynthesis and steady-state chlorophyll fuorescence retrieved from airborne hyperspectral imagery. Remote Sensing of Environment 136, 247-258.
266. Zarco-Tejada PJ, González-Dugo V, Berni JA. 2012. Fluorescence, temperature and narrow-band indices acquired from a UAV platform for water stress detection using a micro-hyperspectral imager and a thermal camera. Remote Sensing of Environment 117, 322-337.
267. Zarco-Tejada PJ, Miller JR, Mohammed GH, Noland TL. 2000. Chlorophyll fuorescence effects on vegetation apparent refectance: I. Leaf-level measurements and model simulation. Remote Sensing of Environment 74, 582-595.
268. Zarter CR, Adams WW III, Ebbert V, Adamska I, Jansson S, Demmig-Adams B. 2006. Winter acclimation of PsbS and related proteins in the evergreen Arctostaphylos uva-ursi as infuenced by altitude and light environment. Plant, Cell and Environment 29, 869-878.
269. Zhao M, Running S, Heinsch FA, Nemani R. 2011. MODIS-derived terrestrial primary production. In: Ramachandran B, Justice CO, Abrams MJ, eds. Land remote sensing and global environmental change. New York: Springer, 635-660.
270. Zhu X-G, Govindjee, Baker NR, deSturler E, Ort DR, Long S P. 2005. Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with Photosystem II. Planta 223, 114-133.