Crystal structure of spinach major light-harvesting complex at 2.72 Å resolution

Nature

Volumn 428, Issue 6980, 2004, Pages 287-292

  Liu, Zhenfeng ^a   Yan, Hanchi ^a   Wang, Kebin ^b   Kuang, Tingyun ^b   Zhang, Jiping ^a   Gui, Lulu ^a   An, Xiaomin ^a   Chang, Wenrui ^a  

^a INSTITUTE OF BIOPHYSICS   (China)

^b INSTITUTE OF BOTANY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPHYLL; HARVESTING; PLANTS (BOTANY); SOLAR ENERGY;

DIPOLE MOMENTS; PHOTOPROTECTION;

CRYSTAL STRUCTURE;

CAROTENOID; CHLOROPHYLL; XANTHOPHYLL; APOPROTEIN; PROTEOLIPID; PROTEOLIPOSOMES;

CRYSTAL STRUCTURE; PHOTOSYNTHESIS; PHYTOPLANKTON;

ARTICLE; COMPLEX FORMATION; CRYSTAL STRUCTURE; ENERGY; NONHUMAN; PHOTOSYNTHESIS; PLANT; PRIORITY JOURNAL; STRUCTURE ANALYSIS; X RAY ANALYSIS; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; LIGHT; LIGHT HARVESTING SYSTEM; METABOLISM; PROTEIN SECONDARY STRUCTURE; SPINACH; X RAY CRYSTALLOGRAPHY;

SPINACIA OLERACEA; VIRIDIPLANTAE;

APOPROTEINS; BINDING SITES; CAROTENOIDS; CHLOROPHYLL; CRYSTALLOGRAPHY, X-RAY; LIGHT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; PROTEOLIPIDS; SPINACIA OLERACEA;

EID: 1642602038     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature02373     Document Type: Article

References (42)

1. Peter, G. F. & Thornber, J. P. Biochemical composition and organization of higher plant photosystem II light-harvesting pigment-proteins. J. Biol. Chem. 266, 16745-16754 (1991).
2. Ruban, A. V., Lee, P. J., Wentworth, M., Young, A. J. & Horton, P. Determination of the stoichiometry and strength of binding of xanthophylls to the photosystem 11 light harvesting complexes. J. Biol. Chem. 274, 10458-10465 (1999).
3. Nußberger, S., Dörr, K., Wang, D. N. & Kühlbrandt, W. Lipid-protein interactions in crystals of plant light-harvesting complex. J. Mol. Biol. 234, 347-356 (1993).
4. Horton, P., Ruban, A. V. & Walters, R. G. Regulation of light harvesting in green plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47, 655-684 (1996).
5. Elrad, D., Niyogi, K. K. Grossman, A. R. A major light-harvesting polypeptide of photosystem 11 functions in thermal dissipation. Plant Cell 14, 1801-1816 (2002).
6. Nilsson, A. et al. Phosphorylation controls the three-dimensional structure of plant light harvesting complex 11. J. Biol. Chem. 272, 18350-18357 (1997).
7. Kühlbrandt, W., Wang, D. N. & Fujiyoshi, Y. Atomic model of plant light-harvesting complex by electron crystallography. Nature 367, 614-621 (1994).
8. Michel, H. Crystallization of membrane proteins. Trends Biochem. Sci. 8, 56-59 (1983).
9. Rossmann, M. G. in Methods in Macromolecular Crystallography (eds Turk, D. & Johnson, L.) 95-103 (IOS Press, Amsterdam, 2001).
10. Jordan, P. et al. Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature 411, 909-917 (2001).
11. McLuskey, K., Prince, S. M., Cogdell, R. J. & Isaacs, N. W. The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050. Biochemistry 40, 8783-8789 (2001).
12. Bassi, R., Croce, R., Cugini, D. & Sandonà, D. Mutational analysis of a higher plant antenna protein provides identification of chromophores bound into multiple sites. Proc. Natl Acad. Sci. USA 96, 10056-10061 (1999).
13. Remelli, R., Varotto, C., Sandonà, D., Croce, R. & Bassi, R. Chlorophyll binding to monomeric light-harvesting complex. A mutation analysis of chromophore-binding residues. J. Biol. Chem. 274, 33510-33521 (1999).
14. Gradinaru, C. C. et al. The flow of excitation energy in LHCII monomers: implications for the structural model of the major plant antenna. Biophys. J. 75, 3064-3077 (1998).
15. Bassi, R., Sandonà, D. & Croce, R. Novel aspects of chlorophyll a/b-binding proteins. Physiol. Planta. 100, 769-779 (1997).
16. Plumley, F. G. & Schmidt, G. W. Reconstitution of chlorophyll a/b light-harvesting complexes: Xanthophyll-dependent assembly and energy transfer. Proc. Natl Acad. Sci. USA 84, 146-150 (1987).
17. Croce, R., Weiss, S. & Bassi, R. Carotenoid-binding sites of the major light-harvesting complex II of higher plants. J. Biol. Chem. 274, 29613-29623 (1999).
18. Paulsen, H., Finkenzeller, B. & Kuhlein, N. Pigments induce folding of light-harvesting chlorophyll a/b-binding protein. Eur. J. Biochem. 215, 809-816 (1993).
19. Hobe, S., Niemeier, H., Bender, A. & Paulsen, H. Carotenoid binding sites in LHCIIb. Relative affinities towards major xanthophylls of higher plants. Eur. J. Biochem. 267, 616-624 (2000).
20. Croce, R., Remelli, R., Varotto, C., Breton, J. & Bassi, R. The neoxanthin binding site of the major light harvesting complex (LHCII) from higher plants. FEBS Lett. 456, 1-6 (1999).
21. Gradinaru, C. C., Stokkum, I. H. M. V., Pascal, A. A., Grondelle, R. V. & Amerongen, H. V. Identifying the pathways of energy transfer between carotenoids and chlorophylls in LHCII and CP29. A multicolor, femtosecond pump-probe study. J. Phys. Chem. B 104, 9330-9342 (2000).
22. Croce, R., Müller, M. G., Bassi, R. & Holzwarth, A. R. Carotenoid-to-chlorophyll energy transfer in recombinant major light-harvesting complex (LHC-II) of higher plants. I. femtosecond transient absorption measurements. Biophys. J. 80, 901-915 (2001).
23. Hieber, A. D., Bugos, R. C. & Yamamoto, H. Y. Plant lipocalins: violaxanthin de-epoxidase and zeaxanthin epoxidase. Biochim. Biophys. Acta 1482, 84-91 (2000).
24. Demmig-Adams, B. & Adams, W. W. Photoprotection and other responses of plants to high light stress. Annu. Rev. Plant Physiol. Plant Mol. Biol. 43, 599-626 (1992).
25. Gilmore, A. M. Mechanistic aspects of xanthophyll cycle-dependent photoprotection in higher plant chloroplasts and leaves. Physiol. Planta. 99, 197-209 (1997).
26. Frank, H. A. et al. Photophysics of the carotenoids associated with the xanthophyll cycle in photosynthesis. Photosynth. Res. 41, 389-395 (1994).
27. Ma, Y. Z., Holt, N. E., Li, X. P., Niyogi, K. K. & Fleming, G. R. Evidence for direct carotenoid involvement in the regulation of photosynthetic light harvesting. Proc. Natl Acad. Sci. USA 100, 4377-4382 (2003).
28. Beddard, G. S., Carlin, S. E. & Porter, G. Concentration quenching of chlorophyll fluorescence in bilayer lipid vesicles and liposomes. Chem. Phys. Lett. 43, 27-32 (1976).
29. Moya, I., Silvestri, M., Vallon, O., Cinque, G. & Bassi, R. Time-resolved fluorescence analysis of the photosystem II antenna proteins in detergent micelles and liposomes. Biochemistry 40, 12552-12561 (2001).
30. Lou, S., Wang, K., Zhao, F., Xu, C. & Kuang, T. A comparative study on PS 11 light harvesting chlorophyll a/b protein complexes between spinach and cucumber. Acta Bot. Sin. 37, 192-197 (1995).
31. Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
32. Tong, L. & Rossmann, M. G. The locked rotation function. Acta Crystallogr. A 46, 783-792 (1990).
33. Weeks, C. M. & Miller, R. The design and implementation of SnB v2.0. J. Appl. Crystallogr. 32, 120-124 (1999).
34. CCP4 Collaborative Computational Project, The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
35. Jones, T. A. in Molecular Replacement (eds Dodson, E. J., Gover, S. & Wolf, W.) 92-105 (SERC Daresbury Laboratory, Warrington, 1992).
36. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
37. Mason, J. G. Nucleotide sequence of a cDNA encoding the light-harvesting chlorophyll a/b binding protein from spinach. Nucleic Acids Res. 17, 5387 (1989).
38. Brünger, A. T. et al. Crystallography and NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
39. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291 (1993).
40. Frishman, D. & Argos, P. Knowledge-based secondary structure assignment. Proteins Struct. Funct. Genet. 23, 566-579 (1995).
41. Kraulis, P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950 (1991).
42. Merritt, E. A. & Murphy, M. E. P. Raster3D version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr. D 50, 869-873 (1994).