Photosynthesis-related quantities for education and modeling

Photosynthesis Research

Volumn 117, Issue 1-3, 2013, Pages 1-30

  Antal, Taras K ^a,b   Kovalenko, Ilya B ^a   Rubin, Andrew B ^a   Tyystjärvi, Esa ^b  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b UNIVERSITY OF TURKU   (Finland)

Author keywords

Chloroplast; Education; Modeling; Photosynthesis; Plant

Indexed keywords

EMBRYOPHYTA; TRACHEOPHYTA;

VEGETABLE PROTEIN;

BIOLOGICAL MODEL; BOTANY; CHLOROPLAST; EDUCATION; METABOLISM; ORGANELLE SIZE; PHOTOSYNTHESIS; REVIEW;

BOTANY; CHLOROPLASTS; MODELS, BIOLOGICAL; ORGANELLE SIZE; PHOTOSYNTHESIS; PLANT PROTEINS;

EID: 84886038090     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-013-9945-8     Document Type: Review

References (266)

1. Albertano P, DiSomma DD, Capucci E (1997) Cyanobacterial picoplankton from the Central Baltic Sea: cell size classification by image-analyzed fluorescence microscopy. J Plankton Res 19:1405-1416 (Pubitemid 27463735)
2. Albertsson P-Å (2001) A quantitative model of the domain structure of the photosynthetic membrane. Trends Plant Sci 6:349-354 (Pubitemid 33145588)
3. - and conserved energetics of photosystem II in cyanobacteria with chlorophyll a and chlorophyll d. Proc Natl Acad Sci USA 108:8054-8058
4. Allen JF (1992) Protein phosphorylation in regulation of photosynthesis. Biochim Biophys Acta 1098:275-335
5. Allen JF (2002a) Photosynthesis of ATP - electrons, proton pumps, rotors, and poise. Cell 110:273-276
6. Allen JF (2002b) Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications. Photosynth Res 73:139-148 (Pubitemid 35293699)
7. 6 f: structure for signaling and vectorial metabolism. Trends Plant Sci 9:130-137 (Pubitemid 38305840)
8. 6 /f and coupling factor ATP synthase complexes of chloroplast thylakoid membranes. Plant Physiol 78:199-202
9. 6-f complex within chloroplast thylakoid membranes. Biochim Biophys Acta 849:94-103
10. 6 f complex. Proc Natl Acad Sci USA 102:15860-15865 (Pubitemid 41552833)
11. Amunts A, Drory O, Nelson N (2007) The structure of a plant photosystem I supercomplex at 3.4 Å resolution. Nature 447:58-63 (Pubitemid 46685832)
12. Amunts A, Toporik H, Borovikova A, Nelson N (2010) Structure determination and improved model of plant photosystem I. J Biol Chem 285:3478-3486
13. Anderson JM (2012) Lateral heterogeneity of plant thylakoid protein complexes: early reminiscences. Philos Trans R Soc B 367:3384-3388
14. Anderson JM, Melis A (1983) Localization of different photosystems in separate regions of chloroplast membranes. Proc Natl Acad Sci USA 80:745-749
15. Anderson JM, Chow WS, De Las Rivas J (2008) Dynamic flexibility in the structure and function of photosystem II in higher plant thylakoid membranes: the grana enigma. Photosynth Res 98:575-587 (Pubitemid 50326507)
16. Andersson B, Anderson JM (1980) Lateral heterogeneity in the distribution of chlorophyll-protein complexes of the thylakoid membranes of spinach chloroplasts. Biochim Biophys Acta 593(2):427-440
17. Andersson B, Barber J (1994) Composition, organization and dynamics of thylakoid membranes. In: Bittar EE, Barber J (eds) Molecular processes of photosynthesis, vol 10. Elsevier, The Netherlands, pp 1-53
18. Antal TK, Volgusheva AA, Kukarskih GP, Bulychev AA, Krendeleva TE, Rubin AB (2006) Effects of sulfur limitation on the PS II functioning in Chlamydomonas reinhardtii as probed by the chlorophyll a fluorescence. Physiol Plant 128:360-367 (Pubitemid 44401114)
19. Antal TK, Krendeleva TE, Pashchenko VZ, Rubin AB, Stensjo K, Tyystjärvi E, Carpentier R, Allakhverdiev SI (2012) Photosynthetic hydrogen production: mechanisms and approaches. In: Azbar N, Levin D (eds) State of the Art and progress in production of biohydrogen. Bentham Science, Bussum, pp 25-54
20. Antal T, Kolacheva A, Maslakov A, Riznichenko G, Krendeleva T, Rubin A (2013) Study of the effect of reducing conditions on the initial chlorophyll fluorescence rise in the green microalgae Chlamydomonas reinhardtii. Photosynth Res 114:143-154
21. Aro EM (ed) (2012) Photosystem II, Special Issue. Biochim Biophys Acta 1817:1-266
22. Aro EM, Andersson B (eds) (2001) Regulation of photosynthesis. In: Govindjee (series ed), vol 11 of Advances in photosynthesis and respiration
23. Atkins PW (1998) Physical chemistry, 6th edn. Freeman, New York
24. Austin JR, Staehelin LA (2011) Three-dimensional architecture of grana and stroma thylakoids of higher plants as determined by electron tomography. Plant Physiol 155:1601-1611
25. 6 f complex from Nostoc sp PCC 7120. J Biol Chem 284:9861-9869
26. Barber J, Iwata S (2005) Refined X-ray structure of photosystem II and its application. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 469-489
27. Belyaeva NE, Schmitt F-J, Steffen R, Paschenko VZ, Riznichenko GYu, Chemeris YuK, Renger G, Rubin AB (2008) PS II model-based simulations of single turnover flash-induced transients of fluorescence yield monitored within the time domain of 100 ns-10 s on dark-adapted Chlorella pyrenoidosa cells. Photosynth Res 98:105-119 (Pubitemid 50307742)
28. Belyaeva NE, Schmitt F-J, Paschenko VZ, Riznichenko GYu, Rubin AB, Renger G (2011) PS II model based analysis of transient fluorescence yield measured on whole leaves of Arabidopsis thaliana after excitation with light flashes of different energies. BioSystems 103:188-195
29. Ben-Shem A, Frolow F, Nelson N (2003) Crystal structure of plant photosystem I. Nature 426:630-635 (Pubitemid 38009364)
30. Berry S, Rumberg B (1999) Proton to electron stoichiometry in electron transport of spinach thylakoids. Biochim Biophys Acta 1410:248-261 (Pubitemid 29114918)
31. Berry S, Rumberg B (2001) Kinetic modeling of the photosynthetic electron transport chain. Bioelectrochemistry 53:35-53 (Pubitemid 32014371)
32. Bhattacharyya AK, Meyer TE, Tollin G (1986) Reduction kinetics of the ferredoxin-ferredoxin-NADP+ reductase complex: a laser flash photolysis study. Biochemistry 25:4655-4661
33. Blackwell M, Gibas C, Gygax S, Roman D, Wagner B (1994) The plastoquinone diffusion coefficient in chloroplasts and its mechanistic implications. Biochim Biophys Acta 1183:533-543
34. Blankenship RE (2002) Molecular mechanisms of photosynthesis. Blackwell Science, Oxford
35. 6/f complex from green plants and cyanobacteria. J Bioenerg Biomembr 26:17-29 (Pubitemid 24103417)
36. Boekema EJ, Hankamer B, Bald D, Kruip J, Nield J, Boonstra AF, Barber J, Rögner M (1995) Supramolecular structure of the photosystem II complex from green plants and cyanobacteria. Proc Natl Acad Sci USA 92:175-179
37. + reductase and plastocyanin in spinach chloroplasts. Eur J Biochem 83:137-141 (Pubitemid 8265340)
38. Bolton JR (1978) Solar energy conversion efficiency in photosynthesis or why two photosystems? In: Hall DO, Coombs J, Goodwin TW (eds) Congr photosynthesis, vol 78. The Biochemical Society, London, pp 621-634
39. Brettel K (1997) Electron transfer and arrangement of the redox cofactors in photosystem I. Biochim Biophys Acta 1318:322-373 (Pubitemid 27073613)
40. Brettel K, Leibl W (2001) Electron transfer in photosystem I. Biochim Biophys Acta 1507:100-114 (Pubitemid 33001515)
41. 6 f complex: structural studies and comparison with the bc1 complex. Biochim Biophys Acta 1459:467-474 (Pubitemid 30612421)
42. Brody S (2002) Fluorescence lifetime, yield, energy transfer and spectrum in photosynthesis, 1950-1960. Photosynth Res 73:127-132 (Pubitemid 35293697)
43. 6 f complex determined by electron crystallography. J Mol Biol 287:117-126 (Pubitemid 29134801)
44. 4 plants as biofuel feedstocks: optimising biomass production and feedstock quality from a lignocellulosic perspective. J Integr Plant Biol 53:120-135
45. Caffari S, Kouřil R, Kereïche S, Boekema EJ, Croce R (2009) Functional architecture of higher plant photosystem II supercomplexes. EMBO J 28:3052-3063
46. Cammack R, Rao KK, Bargeron CP, Hutson KG, Andrew PW, Rogers LJ (1977) Midpoint redox potentials of plants and algal ferredoxins. Biochem J 168:205-209 (Pubitemid 8224072)
47. Campbell DA, Tyystjärvi E (2012) Parametrization of photosystem II photoinactivation and repair. Biochim Biophys Acta 1817:258-265
48. Chow WS, Fan DY, Oguchi R, Jia H, Losciale P, Park YI, He J, Öquist G, Shen YG, Anderson JM (2012) Quantifying and monitoring functional photosystem II and the stoichiometry of the two photosystems in leaf segments: approaches and approximations. Photosynth Res 113:63-74
49. +• reduction kinetics and transition probability of the water oxidizing complex as a function of pH and H/D isotope exchange in spinach thyalkoids. Biochemistry 38:6082-6092
50. Cox RP, Andersson B (1981) Lateral and transverse organization of cytochromes in the chloroplast thylakoid membrane. Biochem Biophys Res Commun 103:1336-1342
51. 6 f complex. Biochemistry 43:5921-5929 (Pubitemid 38669459)
52. 6 f complex. In: Roberts G (ed) Encyclopedia of biophysics, vol 1. Springer-Verlag, Berlin, pp 417-422
53. Crane FL (2010) Discovery of plastoquinones: a personal perspective. Photosynth Res 103:195-209
54. Croce R, van Amerongen H (2011) Light-harvesting and structural organization of Photosystem II: from individual complexes to thylakoid membrane. J Photochem Photobiol B 104:142-153
55. Croce R, Morosinotto T, Bassi R (2006) LHCI: the antenna complex of Photosystem I in plants and green algae. In: Golbeck JH (ed) Photosystem I, the light-driven plastocyanin:ferredoxin oxidoreductase, Chapter 10, Series: Advances in photosynthesis and respiration. Kluwer Academic Publishers, Dortecht, pp 119-137
56. Crofts AR, Wraight CA (1983) The electrochemical domain of photosynthesis. Biochim Biophys Acta 726:149-186
57. Cruz JA, Sacksteder CA, Kanazawa A, Kramer DM (2001) Contribution of electric field (Δψ) to steady-state transthylakoid proton motive force in vitro and in vivo. Control of pmf parsing into Δψ and ΔpH by counterion fluxes. Biochemistry 40:1226-1237 (Pubitemid 32142884)
58. Dall'Osto L, Lico C, Alric J, Giuliano G, Havaux M, Bassi R (2006) Lutein is needed for efficient chlorophyll triplet quenching in the major LHCII antenna complex of higher plants and effective photoprotection in vivo under strong light. BMC Plant Biol 6:32
59. Dall'Osto L, Cazzaniga S, North H, Marion-Poll A, Bassi R (2007) The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress. Plant Cell 19:1048-1064 (Pubitemid 46953246)
60. Dall'Osto L, Holt NE, Kaligotla S, Fuciman M, Cazzaniga S, Carbonera D, Frank HA, Alric J, Bassi R (2012) Zeaxanthin protects plant photosynthesis by modulating chlorophyll triplet yield in specific light-harvesting antenna subunits. J Biol Chem 287:41820-41834
61. Danielsson R, Albertsson PA (2009) Fragmentation and separation analysis of the photosynthetic membrane from spinach. Biochim Biophys Acta 1787:25-36
62. Danielsson R, Suorsa M, Paakkarinen V, Albertsson P-Å, Styring S, Aro E-M, Mamedov F (2006) Dimeric and monomeric organization of photosystem II. Distribution of five distinct complexes in the different domains of the thylakoid membrane. J Biol Chem 281:14241-14249 (Pubitemid 43853025)
63. Dau H, Zaharieva I, Haumann M (2012) Recent developments in research on water oxidation by photosystem II. Curr Opin Chem Biol 16:3-10
64. Daum B, Kühlbrandt W (2011) Electron tomography of plant thylakoid membranes. J Exp Bot 62:2393-2400
65. Daum B, Nicastro D, Il JA, McIntosh JR, Kühlbrandt W (2010) Arrangement of photosystem II and ATP synthase in chloroplast membranes of spinach and pea. Plant Cell 22:1299-1312
66. Dekker JP, Boekema EJ (2005) Supramolecular organization of thylakoid membrane proteins in green plants. Biochim Biophys Acta 1706:12-39 (Pubitemid 40044704)
67. Delosme R, Olive J, Wollman F-A (1996) Changes in light energy distribution upon state transitions: an in vivo photoacoustic study of the wild type and photosynthesis mutants from Chlamydomonas reinhardtii. Biochim Biophys Acta 1273:150-158 (Pubitemid 26072614)
68. Demmig-Adams B (1990) Carotenoids and photoprotection in plants: a role for the xanthophyll zeaxanthin. Biochim Biophys Acta 1020:1-24
69. Demmig-Adams B, Adams III WW, Mattoo AK (2006) Photoprotection, photoinhibition, gene regulation, and environment. In: Govindjee (ed.) Advances in Photosynthesis and Respiration Series, V. 2, Springer, Dordrecht, The Netherlands
70. D. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Advances in photosynthesis and respiration, vol 22. Springer, Dordrecht, pp 207-233
71. Drepper F, Hippler M, Nitschke W, Haehnel W (1996) Binding dynamics and electron transfer between plastocyanin and photosystem I. Biochemistry 35:1282-1295 (Pubitemid 26050792)
72. Driouich A, Jauneau A, Staehelin LA (1997) 7-Dehydrobrefeldin a, a naturally occurring brefeldin A derivative, inhibits secretion and causes a cis-to-trans breakdown of Golgi stacks in plant cells. Plant Physiol 113:487-492 (Pubitemid 27164800)
73. Drop B, Webber-Birungi M, Fusetti F, Kouřil R, Redding KE, Boekema EJ, Croce R (2011) Photosystem I of Chlamydomonas reinhardtii contains nine light-harvesting complexes (Lhca) located on one side of the core. J Biol Chem 286:44878-44887
74. Eberhard S, Finazzi G, Wollman F-A (2008) The dynamics of photosynthesis. Annu Rev Genet 42:463-515
75. Eckert H-J, Geiken B, Bernarding J, Napiwotzki A, Eichler H-J, Renger G (1991) Two sites of photoinhibition of the electron transfer in oxygen evolving and Tris-treated PS II membrane fragments from spinach. Photosynth Res 27:97-108
76. Falkowski PG, Raven JA (2007) Aquatic photosynthesis (2nd ed). Princeton University Press
77. Fan DY, Hope AB, Smith PJ, Jia H, Pace RJ, Anderson JM, Chow WS (2007) The stoichiometry of the two photosystems in higher plants revisited. Biochim Biophys Acta 1767:1064-1072 (Pubitemid 47103288)
78. Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S (2004) Architecture of the photosynthetic oxygen-evolving center. Science 303:1831-1838 (Pubitemid 38374869)
79. Finazzi G, Rappaport F, Furia A, Fleischmann M (2002) Involvement of state transition in the switch between linear and cyclic electron flow in Chlamydomonas reinhardtii. EMBO Rep 3:280-285 (Pubitemid 34269523)
80. Flindt R (2006) Amazing numbers in biology. Elsevier, Spektrum Akademischer Verlag, Heidelberg
81. Ford DN, Shibles R (1988) Photosynthesis and other traits in relation to chloroplast number during soybean leaf senescence. Plant Physiol 86:108-111
82. Foster JS, Havemann SA, Singh AK, Sherman LA (2009) Role of mrgA in peroxide and light stress in the cyanobacterium Synechocystis sp. PCC 6803. FEMS Microbiol Lett 293:298-304
83. Frank HA, Cogdell RJ (1996) Carotenoids in photosynthesis. Photochem Photobiol 63:257-264
84. Friend AD, Geider RJ, Behrenfeld MJ, Still CJ (2009) Photosynthesis in global-scale models. In: Laisk A, Nedbal L, Govindjee (eds) Photosynthesis in silico, Series: advances in photosynthesis and respiration, vol 29. Springer, Dordrecht, pp 465-497
85. Fromme P (1998) Crystallization of Photosystem I for structural analysis. Habilitation. Technical University Berlin, Berlin
86. Fromme P, Allen JP (2007) X-ray crystallography of photosynthetic proteins. In: Matysik J, TJ Aartsma (eds) Biophysical techniques in photosynthesis, Series: advances in photosynthesis and respiration, Vol 26. Kluwer Academic Publishers, Dordrecht, pp 97-124
87. Fromme P, Grotjohann I (2006) Structural analysis of cyanobacterial Photosystem I. In: Golbeck JH (ed) Photosystem I, the light-driven plastocyanin:ferredoxin oxidoreductase, chapter 6, Series: Advances in photosynthesis and respiration. Kluwer Academic Publishers, pp 47-69
88. Fromme P, Schlodder E, Jansson S (2003) Structure and function of the antenna system in Photosystem I. In: Green B, Parson B (eds) Light harvesting antennas in photosynthesis. Series: Advances in photosynth research, Kluwer Academic Press, The Netherlands, pp 253-279
89. Fromme R, Grotjohann I, Fromme P (2008) Structure and function of Photosystem I. In: Renger G (ed) Primary processes of photosynthesis: basic principles and apparatus, part 2. Series: Comprehensive series in photochemical and photobiological sciences. RSC Publishing, Cambridge, pp 111-146
90. Golbeck JH (ed) (2005) Photosystem I. The light-driven plastocyanin:ferredoxin oxidoreductase. Springer, The Netherlands
91. Govindjee (1999) Carotenoids in photosynthesis: an historical perspective. In: Frank HA, Young AJ, Britton G, Cogdell RJ (eds) The photochemistry of carotenoids. Kluwer Academic Publishers, pp 1-19
92. Govindjee (2004) Chlorophyll a fluorescence: a bit of basics and history. In: Papageorgiou GC, Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis, advances in photosynthesis and respiration, vol 19. Springer, Dordrecht, pp 1-41
93. 700, the functional plastoquinone pool, and the ratio of the photosystems in spinach chloroplasts. J Biol Chem 259:14003-14010
94. Grabolle M, Dau H (2005) Energetics of primary and secondary electron transfer in Photosystem II membrane particles of spinach revisited on basis of recombination-fluorescence measurements. Biochim Biophys Acta 1708:209-218 (Pubitemid 40824951)
95. Green BR, Gantt E (2005) Distal and extrinsic photosystem II antennas. In: Wydrzynski TJ, Satoh K (eds) Photosystem II. The light-driven Water: Plastoquinone Oxidoreductase. Springer, Dordrecht, pp 23-44
96. Green BR, Parson WW (eds) (2003) Light-harvesting antennas in photosynthesis. Springer, The Netherlands
97. Gross EL (1996) Plastocyanin: structure, location, diffusion, and electron transfer mechanisms. In: Ort D, Yocum C (eds) Oxygenic photosynthesis: the light reactions. Kluwer Academic Publishers, Dordrecht, pp 413-429
98. Grotjohann I, Fromme P (2005) Structure of cyanobacterial Photosystem I. Photosynth Res 85:51-72 (Pubitemid 40678759)
99. Grundmeier A, Dau H (2012) Structural models of the manganese complex of photosystem II and mechanistic implications. Biochim Biophys Acta 1817:88-105
100. Gruszecki WI, Strzalka K (2005) Carotenoids as modulators of lipid membrane physical properties. Biochim Biophys Acta 1740:108-115 (Pubitemid 40798219)
101. Guedes AC, Amaro HM, Malcata FX (2011) Microalgae as sources of high added-value compounds - a brief review of recent work. Biotechnol Prog 27:597-613
102. Guskov A, Kern J, Gabdulkhakov A, Broser M, Zouni A, Saenger AW (2009) Cyanobacterial photosystem II at 2.9-Å resolution and the role of quinones, lipids, channels and chloride. Nat Struct Mol Biol 16:334-342
103. Guskov A, Gabdulkhakov A, Broser M, Glöckner C, Hellmich J, Kern J, Frank J, Müh F, Saenger W, Zouni A (2010) Recent progress in the crystallographic studies of photosystem II. Chem Phys Chem 11:1160-1171
104. Haehnel W (1984) Photosynthetic electron transport in higher plants. Annu Rev Plant Physiol 35:659-693
105. Haehnel W, Ratajczak R, Robenek H (1989) Lateral distribution and diffusion of plastocyanin in chloroplast thylakoids. J Cell Biol 108:1397-1405
106. Hall DO, Cammack R, Rao KK (1973) The plant ferredoxins and their relationship to the evolution of ferredoxins from primitive life. Pure Appl Chem 34:553-578
107. Hankamer B, Barber J, Boekema EJ (1997) Structure and membrane organization of photosystem II in green plants. Annu Rev Plant Physiol Plant Mol Biol 48:641-671
108. Hankamer B, Barber J, Nield J (2005) Structural analysis of the Photosystem II core/antenna holocomplex by electron microscopy. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 403-424
109. Hanke G, Mulo P (2013) Plant type ferredoxins and ferredoxin-dependent metabolism. Plant Cell Environ 36:1071-1084
110. 6 f complex. Proc Natl Acad Sci USA 110:4297-4302
111. Haslett BG, Cammack R, Whatley FR (1973) Quantitative studies on ferredoxin in greening bean leaves. Biochem J 136:697-703
112. Haumann M, Junge W (1994) The rates of proton uptake and electron transfer at the reducing side of photosystem II in thylakoids. FEBS Lett 347:45-50 (Pubitemid 24205028)
113. 2 solubilization in leaves. Plant Physiol 108:1059-1066
114. Havaux M, Niyogi KK (1999) The violaxanthin cycle protects plants from photooxidative damage by more than one mechanism. Proc Natl Acad Sci USA 96:8762-8767 (Pubitemid 29354865)
115. Havaux M, Dall'osto L, Bassi R (2007) Zeaxanthin has enhanced antioxidant capacity with respect to all other xanthophylls in Arabidopsis leaves and functions independent of binding to PSII antennae. Plant Physiol 145:1506-1520 (Pubitemid 350276771)
116. Hillier W, Messinger J (2005) Mechanism of photosynthetic oxygen production. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 567-608
117. 700 reaction center chlorophylls provide new insight into the nature of the primary electron donor. Biophys J 90:552-565
118. Hope AB (2000) Electron transfers amongst cytochrome f, plastocyanin and photosystem I: kinetics and mechanisms. Biochim Biophys Acta 1456:5-26 (Pubitemid 30009734)
119. Hope AB, Matthews DB, Valente P (1994) The kinetics of reactions around the cytochrome bf complex studied in an isolated system. Photosynth Res 40:199-206 (Pubitemid 2113881)
120. + reductase. In: Golbeck JH (ed) Photosystem I, the light-driven plastocyanin:ferredoxin oxidoreductase, chapter 27, series: advances in photosynthesis and respiration. Kluwer Academic Publishers, Dordrecht, pp 455-476
121. Hurley JK, Hazzard JT, Martinez-Julvez M, Medina M, Gomez-Moreno C, Tollin G (1999) Electrostatic forces involved in orienting Anabaena ferredoxin during binding to Anabaena ferredoxin:NADP+ reductase: site-specific mutagenesis, transient kinetic measurements, and electrostatic surface potentials. Protein Sci 8:1614-1622 (Pubitemid 29379943)
122. Illerhaus J, Altschmied L, Reichert J, Zak E, Herrmann RG, Haehnel W (2000) Dynamic interaction of plastocyanin with the cytochrome bf complex. J Biol Chem 275:17590-17595 (Pubitemid 30430804)
123. Iwai M, Takizawa K, Tokutsu R, Okamuro A, Takahashi Y, Minagawa J (2010) Isolation of the elusive supercomplex that drives cyclic electron flow in photosynthesis. Nature 464:1210-1213
124. Jahns P, Holzwarth AR (2012) The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II. Biochim Biophys Acta 1817:182-193
125. Jensen PE, Bassi R, Boekema EJ, Dekker JP, Jansson S, Leister D, Robinson C, Scheller HV (2007) Structure, function and regulation of plant photosystem I. Biochim Biophys Acta 1767:335-352 (Pubitemid 46659882)
126. Johnson MP, Brain APR, Ruban AV (2011) Changes in thylakoid membrane thickness associated with the reorganization of photosystem II light harvesting complexes during photoprotective energy dissipation. Plant Signal Behav 6:1-5
127. Joliot A, Joliot P (1964) Etude cinétique de la réaction photochimique libérant l'oxygène au cours de la photosynthèse. CR Acad Sci Paris 258:4622-4625
128. Joliot P, Joliot A (2003) Excitation transfer between photosynthetic units: the 1964 experiment. Photosynth Res 76:241-245 (Pubitemid 37060529)
129. Jordan P, Fromme P, Klukas O, Witt HT, Saenger W, Krauß N (2001) Three-dimensional structure of cyanobacterial Photosystem I at 2.5 Å resolution. Nature 411:909-917 (Pubitemid 32601481)
130. Kirchoff H, Borinski M, Lenhert S, Chi L, Büchel C (2004) Transversal and lateral exciton energy transfer in grana thylakoids of spinach. Biochemistry 43:14508-14516 (Pubitemid 39491985)
131. Kouřil R, Dekker JP, Boekema EJ (2012) Supramolecular organization of photosystem II in green plants. Biochim Biophys Acta 1817:2-12
132. Kovalenko IB, Diakonova AN, Abaturova AM et al (2010) Direct computer simulation of ferredoxin and FNR complex formation in solution. Phys Biol 7:26001
133. Kovalenko IB, Abaturova AM, Riznichenko GY, Rubin AB (2011) Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin. BioSystems 103:180-187
134. Kramer DM, Crofts AR (1993) The concerted reduction of the high- and low-potential chains of the bf complex by plastoquinol. Biochim Biophys Acta 1183:72-84 (Pubitemid 23322956)
135. Kramer DM, Evans JR (2011) The importance of energy balance in improving photosynthetic productivity. Plant Physiol 155:70-78
136. Kramer DM, Sacksteder CA, Cruz JA (1999) How acidic is the lumen? Photosynth Res 60:151-163 (Pubitemid 29423014)
137. Kramer DM, Avenson TJ, Kanazawa A, Cruz JA, Ivanov B, Edwards B (2004) The relationship between photosynthetic electron transfer and its regulation. In: Papageorgiou GC, Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis. Springer, Dordrecht, pp 251-278
138. A, in photosystem II. Biochim Biophys Acta 1229:193-201
139. Laisk A, Nedbal L, Govindjee (eds) (2009) Photosynthesis in silico. Understanding complexity from molecules to ecosystems. In: Govindjee (ed) Advances in photosynthesis and respiration, vol 29. Springer, Dordrecht
140. Lam MK, Lee KT (2012) Microalgae biofuels: a critical review of issues, problems and the way forward. Biotechnol Adv 30:673-690
141. Lamppa GK, Elliot LV, Bendich AJ (1980) Changes in chloroplast number during pea leaf development. Planta 148:437-443
142. Latouche G, Cerovic ZG, Montagnini F, Moya I (2000) Light-induced changes of NADPH fluorescence in isolated chloroplasts: a spectral and fluorescence lifetime study. Biochim Biophys Acta 1460:311-329
143. Latowski D, Schaller S, Olchawa-Pajor M, Goss R, Strzałka K (2011) Violaxanthin and diadinoxanthin cycles as an important photoprotective mechanism in photosynthesis. Rus J Plant Physiol V 58:952-964
144. Lavergne J, Briantais J-M (1996) Photosystem II heterogeneity. In: Ort DR, Yocum CF (eds) Oxygenic photosynthesis: the light reactions. Kluwer Academic Publishers, Dordrecht, pp 265-287
145. Lavergne J, Trissl H-W (1995) Theory of fluorescence induction in photosystem II: Derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photosynthetic units. Biophys J 68:2474-2492
146. Lawlor DW (1987) Photosynthesis: metabolism, control and physiology. Wiley, New York
147. Lawlor DW (2001) Photosynthesis, 3rd edn. BIOS Scientific Publishers, Oxford
148. i site and vice versa? J Biol Chem 284:20822-20829
149. Lazár D (1999) Chlorophyll a fluorescence induction. Biochim Biophys Acta 1412:1-28 (Pubitemid 29238113)
150. Lazár D (2003) Chlorophyll a fluorescence rise induced by high light illumination of dark-adapted plant tissue studied by means of a model of photosystem II and considering photosystem II heterogeneity. J Theor Biol 220:469-503 (Pubitemid 36297030)
151. Lazár D (2009) Modelling of light-induced chlorophyll a fluorescence rise (O-J-I-P transient) and changes in 820 nm-transmittance signal of photosynthesis. Photosynthetica 47:483-498
152. Lichtenthaler H, Babani F (2004) Light adaptation and scenescence of the photosynthetic apparatus. Changes in pigment composition, chlorophyll fluorescence parameters and photosynthetic activity. In: Papageorgiou GC, Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis. Springer, Dordrecht, pp 713-736
153. Liu Z, Yan H, Wang K, Kuang T, Zhang J, Gui L, An X, Chang W (2004) Crystal structure of spinach light-harvesting complex at 2.72 Å resolution. Nature 428:287-292 (Pubitemid 38418793)
154. Loll B, Kern J, Saenger W, Zouni A, Biesiadka J (2005) Towards complete cofactor arrangement in the 3.0 Å resolution structure of photosystem II. Nature 438:1040-1044 (Pubitemid 43093979)
155. Malnoë A, Wollman FA, Vitry C, Rappaport F (2011) Photosynthetic growth despite a broken Q-cycle. Nat Commun 2:301
156. Matsubara H, Sasaki RM, Chain RK (1968) Spinach ferredoxin. I. Amino acid composition and terminal sequences. J Biol Chem 243:1725-1731
157. Matsubara S, Krause GH, Aranda J, Virgo A, Beisel KG, Jahns P, Winter K (2009) Sun-shade patterns of leaf carotenoid composition in 86 species of neotropical forest plants. Funct Plant Biol 36:1-20
158. McCarty RE, Evron Y, Johnson EA (2000) The chloroplast ATP synthase: a rotary enzyme? Annu Rev Plant Physiol 51:83-109
159. Melis A (1996) Excitation energy transfer: functional and dynamic aspects of Lhc(cab) proteins. In: Ort DR, Yocum CF (eds), Oxygenic photosynthesis: the light reactions. Kluwer Academic Publishers, Dordrecht, pp 523-538
160. Melis A, Brown J (1980) Stoichiometry of system I and system II reaction centers and of plastoquinone in different photosynthetic membranes. Proc Natl Acad Sci USA 77:4712-4716
161. Melis A, Harvey GW (1981) Regulation of photosystem stoichiometry, chlorophyll a and chlorophyll b content and relation to chloroplast ultrastructure. Biochim Biophys Acta 637:138-145
162. Melis A, Homann P (1975) Kinetic analysis of the fluorescence induction in 3-(3,4-dichlorophenyl)-1,1-dimethylurea poisoned chloroplasts. Photochem Photobiol 21:431-437
163. Miller KR, Staehelin LA (1976) Analysis of thylakoid outer surface. Coupling factor is limited to unstacked membrane regions. J Cell Biol 68:30-47
164. Milo R, Jorgensen P, Moran U, Weber G, Springer M (2010) BioNumbers - the database of key numbers in molecular and cell biology. Nucleic Acids Res 38:D750-D753
165. Miloslavina Y, Szczepaniak M, Muller MG, Sander J, Nowaczyk M, Rögner M, Holzwarth AR (2006) Charge separation kinetics in intact Photosystem II core particles is trap-limited. A picosecond fluorescence study. Biochemistry 45:2436-2442 (Pubitemid 43271344)
166. Minagawa J (2011) State transitions: the molecular remodeling of photosynthetic supercomplexes that controls energy flow in the chloroplast. Biochim Biophys Acta 1807:897-905
167. Mishra Y, Jänkänpää HJ, Kiss AZ, Funk C, Schröder WP, Jansson S (2012) Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components. BMC Plant Biol 12:6
168. Mitchell R, Spillmann A, Haehnel W (1990) Plastoquinol diffusion in linear photosynthetic electron transport. Biophys J 58:1011-1024 (Pubitemid 20307869)
169. Moal G, Lagoutte B (2012) Photo-induced electron transfer from photosystem I to NADP(+): characterization and tentative simulation of the in vivo environment. Biochim Biophys Acta 1817:1635-1645
170. Moser CC, Dutton PL (2006) Application of marcus theory to photosystem I electron transfer. In: Golbeck JH (ed) Photosystem I: the light-driven plastocyanin: ferredoxin oxidoreductase. Advances in photosynthesis and respiration, vol 24. Springer, Dordrecht, pp 583-594
171. Mulo P (2011) Chloroplast-targeted ferredoxin-NADP(+) oxidoreductase (FNR): structure, function and location. Biochim Biophys Acta 1807:927-934
172. Murakami A, Fujita Y, Nemson JA, Melis A (1997) Chromatic Regulation in Chlamydomonas reinhardtii: time course of photosystem stoichiometry adjustment following a shift in growth light quality. Plant Cell Physiol 38:188-193 (Pubitemid 27170032)
173. Nakajima M, Sakamoto T, Wada K (2002) The complete purification and characterization of three forms of ferredoxin-NADP(+) oxidoreductase from a thermophilic cyanobacterium Synechococcus elongatus. Plant Cell Physiol 43:484-493 (Pubitemid 34604595)
174. Nelson N (2011) Photosystems and global effects of oxygenic photosynthesis. Biochim Biophys Acta 1807:856-863
175. Nelson N, Yocum CF (2006) Structure and function of photosystems I and II. Annu Rev Plant Biol 57:521-565 (Pubitemid 44061036)
176. Nishiyama Y, Allakhverdiev SI, Murata N (2011) Protein synthesis is the primary target of reactive oxygen species in the photoinhibition of photosystem II. Physiol Plant 142:35-46
177. Niyogi K, Björkman O, Grossman A (1997) The roles of specific xanthophylls in photoprotection. Proc Natl Acad Sci USA 94:14162-14167 (Pubitemid 28009727)
178. Nobel P (2005) Physicochemical and environmental plant physiology, 3rd edn. Elsevier Academic Press, The Netherlands
179. Nobel P (2009) Physicochemical and environmental plant physiology, 4th edn. Elsevier Academic Press, Amsterdam
180. Nordling M, Sigfridsson K, Young S, Lundberg LG, Hansson O (1991) Flash-photolysis studies of the electron transfer from genetically modified spinach plastocyanin to photosystem I. FEBS Lett 291:327-330
181. 2 evolution and chlorophyll fluorescence in sunflower leaves. Photosynth Res 114:15-28
182. Oja V, Eichelmann H, Laisk A (2011) The size of the lumenal proton pool in leaves during induction and steady-state photosynthesis. Photosynth Res 110:73-88
183. Okayama S (1976) Redox potential of plastoquinone A in spinach chloroplasts. Biochim Biophys Acta 440:331-336
184. Ort DR, Yocum CF (eds) (1996) Oxygenic photosynthesis: the light reactions. Kluwer Academic Publishers, Dordrecht
185. Papageorgiou CG, Govindjee (eds) (2004) Chlorophyll a fluorescence: a signature of photosynthesis. Springer, The Netherlands
186. Park Y-I, Anderson JM, Chow WS (1996) Photoinactivation of functional photosystem II and D1-protein synthesis in vivo are independent of the modulation of the photosynthetic apparatus by growth irradiance. Planta 198:300-309
187. Paulsen H (1999) Carotenoids and the assembly of light-harvesting complexes. In: Frank HA, Young AJ, Britton G and Cogdell RJ (eds) The photochemistry of carotenoids. Advances in photosynthesis and respiration, vol 8. Springer, Dordrecht, pp 123-135
188. Peltier G, Tolleter D, Billon E, Cournac L (2010) Auxiliary electron transport pathways in chloroplasts of microalgae. Photosynth Res 106:19-31
189. Peter GF, Thornber JP (1991) Biochemical composition and organization of higher plant photosystem II light-harvesting pigment-proteins. J Biol Chem 266:16745-16754 (Pubitemid 21907862)
190. Petersen J, Förster K, Turina P, Gräber P (2012) Comparison of the H+/ATP ratios of the H+-ATP synthases from yeast and from chloroplast. Proc Natl Acad Sci USA 109:11150-11155
191. Piechulla B, Heldt HW (2010) Plant biochemistry. Elsevier Academic Press, The Netherlands
192. Porra RJ, Thompson WA, Kriedemann PE (1989) Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim Biophys Acta 975:384-394
193. 559 in photosystem II. J Photochem Photobiol 104:341-347
194. Prokhorenko VI, Holzwarth AR (2000) Primary processes and structure of the Photosystem II reaction center: a photon echo study. J Phys Chem 104:11563-11578
195. Pschorn R, Rühle W, Wild A (1988) Structure and function of ferredoxin-NADP+ oxidoreductase. Photosynth Res 17:217-229
196. Rabinowitch E, Govindjee (1969) Photosynthesis. Wiley, New York
197. 4Ca cluster and to the evolution of molecular oxygen in photosystem II. Coord Chem Rev 252:259-272
198. Rappaport F, Guergova-Kuras M, Nixon PJ, Diner BA, Lavergne J (2002) Kinetics and pathways of charge recombination in photosystem II. Biochemistry 41:8518-8527 (Pubitemid 34705507)
199. Raven JA (1984) Energetics and transport in aquatic plants. In: Liss AR (ed) Series: MBL lectures in biology, vol 4. Wiley, New York
200. Raven PH, Johnson GB, Singer SR, Losos JB (2005a) Biology, 7th edn. McGraw Hill, Boston
201. Raven PH, Evert RF, Eichhorn SE (2005b) Biology of plants, 7th edn. Freeman, New York
202. Redinbo MR, Cascio D, Choukair MK, Rice D, Merchant S, Yeates TO (1993) The 1.5-Å crystal structure of plastocyanin from the green alga Chlamydomonas reinhardtii. Biochemistry 32:10560-10567 (Pubitemid 23327787)
203. Redinbo MR, Yeates TO, Merchant S (1994) Plastocyanin: structural and functional analysis. J Bioenerg Biomembr 26:49-66 (Pubitemid 24103419)
204. Renger G (2008) Primary processes of photosynthesis: principles and apparatus. In: Häder DP, Jori G (eds) Comprehensive series in photochemical and photobiological sciences, vol 9. RSC Publishing, Cambridge
205. Renger G (2012) Mechanism of light induced water splitting in Photosystem II of oxygen evolving photosynthetic organisms. Biochim Biophys Acta 1817:1164-1176
206. Rich PR (1984) Electron and proton transfers through quinones and cytochrome bc complexes. Biochim Biophys Acta 768:53-79
207. Rochaix J-D (2011) Reprint of: regulation of photosynthetic electron transport. Biochim Biophys Acta 1807:878-886
208. Roelofs TA, Lee CH, Holzwarth AR (1992) Global target analysis of picosecond chlorophyll fluorescence kinetic from pea chloroplasts. A new approach to the characterization of the primary processes in photosystem II alpha- and beta-units. Biophys J 61:1147-1163
209. Roy S, Kulshrestha K, Prasad M (2009) Switching light with light in chlorophyll-a molecules based on excited-state absorption. IEEE Trans Nanobioscience 8:83-91
210. Sacksteder CA, Kanazawa A, Jacoby ME, Kramer DM (2000) The proton to electron stoichiometry of steady-state photosynthesis in living plants: a proton-pumping Q-cycle is continuously engaged. Proc Natl Acad Sci USA 97:14283-14288 (Pubitemid 32016568)
211. Sanderson DG, Anderson LB, Gross EL (1986) Determination of the redox potential and diffusion coefficient of the protein plastocyanin using optically transparent filar electrodes. Biochim Biophys Acta 852:269-278
212. Santabarbara S, Galuppini L, Casazza AP (2010) Bidirectional electron transfer in the reaction centre of photosystem I. J Integr Plant Biol 52:735-749
213. Santabarbara S, Casazza AP, Ali K, Economou CK, Wannathong T, Zito F, Redding KE, Rappaport F, Purton S (2013) The requirement for carotenoids in the assembly and function of the photosynthetic complexes in Chlamydomonas reinhardtii. Plant Physiol 161(1):535-546
214. Scheer H (2003) Light-harvesting antennas in photosynthesis. In: Green BR, Parsons WW (eds) Series: advances in photosynthesis and respiration, vol 13. Kluwer Academic Publishers, Dordrecht
215. + reduction during water splitting. Biochemistry 37:3974-3981 (Pubitemid 28162955)
216. Schöttler MA, Kirchhoff H, Weis E (2004) The role of plastocyanin in the adjustment of the photosynthetic electron transport to the carbon metabolism in tobacco. Plant Physiol 136:4265-4274
217. Seelert H, Poetsch A, Dencher NA, Engel A, Stahlberg H, Muller DJ (2000) Structural biology: proton-powered turbine of a plant motor. Nature 405:418-419 (Pubitemid 30367410)
218. Setif P (2001) Ferredoxin and flavodoxin reduction by photosystem I. Biochim Biophys Acta 1507:161-179 (Pubitemid 33001518)
219. Setif P (2006) Electron transfer from the bound iron-sulfur clusters to ferredoxin/flavodoxin: kinetic and structural properties of ferredoxin/ flavodoxin reduction by photosystem I. In: Golbeck JH (ed) Photosystem I: the light-driven plastocyanin:ferredoxin oxidoreductase. Springer, pp. 439-454
220. Shi LX, Hall M, Funk C, Schröder WP (2012) Photosystem II, a growing complex: updates on newly discovered components and low molecular mass proteins. Biochim Biophys Acta 1817:13-25
221. Shikanai T, Munekage Y, Kimura KJ (2002) Regulation of proton-to-electron stoichiometry in photosynthetic electron transport: physiological function in photoprotection. J Plant Res 115:3-10 (Pubitemid 41404568)
222. Sözer Ö (2011) Carotenoids assist in assembly and functions of photosynthetic complexes in cyanobacteria. Doctoral Thesis. Szeged, Hungary
223. B phylloquinones in Photosystem I. Biochim Biophys Acta 1787:1057-1088
224. Staehelin LA (1986) Chloroplast structure and supramolecular organization of photosynthetic membranes. In: Staehelin LA, Arntzen CJ (eds) Photosynthesis III: photosynthetic membranes and light-harvesting systems. Springer-Verlag, Berlin, pp 1-84
225. Staehelin LA (2003) Chloroplast structure: from chlorophyll granules to supra-molecular architecture of thylakoid membranes. Photosynth Res 76:185-196 (Pubitemid 37060525)
226. Staehelin LA, Arntzen CJ (eds) (1986) Photosynthesis III: photosynthetic membranes and light-harvesting systems. In: Pirson A, Zimmerman MH (series eds) Encyclopedia of plant physiology, vol 19. Springer-Verlag, Berlin
227. Staehelin LA, van der Staay GWM (1996) In: Ort DR, Yocum CF (eds) Oxygenic photosynthesis: the light reactions. Kluwer Academic Publishers, Dordrecht, pp 11-30
228. +-ATP synthases from chloroplasts and Escherichia coli. Proc Natl Acad Sci USA 105:3745-3750 (Pubitemid 351723469)
229. Stirbet A (2013) Excitonic connectivity between Photosystem II units: what is it, and how to measure it? Photosynth Res. doi: 10.1007/s11120-013-9863- 9
230. 2. Plant Physiol 81:1115-1122
231. Strasser RJ (1978) The grouping model of plant photosynthesis. In: Akoyunoglou G (ed) Chloroplast development. Elsevier, North Holland, pp 513-524
232. Strasser RJ, Stirbet AD (2001) Estimation of the energetic connectivity of PSII centres in plants using the fluorescence rise O-J-I-P. Fitting of experimental data to three different PS II models. Math Comput Simul 56:451-461 (Pubitemid 32666018)
233. Suorsa M, Sirpiö S, Aro E-M (2009) Towards characterization of the chloroplast NAD(P)H dehydrogenase complex. Mol Plant 2:1127-1140
234. Svensson P, Andreasson E, Albertsson PA (1991) Heterogeneity among photosystem I. Biochim Biophys Acta 1060:45-50
235. Taiz L, Zeiger E (2010) Plant physiology, 5th edn. Sinauer Associates
236. Takahama U, Shimizu-Takahama M, Heber U (1981) The redox state of the NADP system in illuminated chloroplasts. Biochim Biophys Acta 637:530-539
237. Takahashi Y, Yasui TA, Stauber EJ, Hippler M (2004) Comparison of the subunit compositions of the PSI-LHCI supercomplex and the LHCI in the green alga Chlamydomonas reinhardtii. Biochemistry 43:7816-7823 (Pubitemid 38787689)
238. Takahashi H, Clowez S, Wollman FA, Vallon O, Rappaport F (2013) Cyclic electron flow is redox-controlled but independent of state transition. Nat Commun 4:1954
239. Takizawa K, Cruz JA, Kanazawa A, Kramer DM (2007) The thylakoid proton motive force in vivo. Quantitative, noninvasive probes, energetics, and regulatory consequences of light-induced pmf. Biochim Biophys Acta 1767:1233-1244 (Pubitemid 47498308)
240. Thornton LE, Roose JL, Pakrasi HB, Ikeuchi M (2005) The low molecular weight proteins of photosystem II. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Advances in photosynthesis and respiration, vol 22. Springer, Dordrecht, pp 121-138
241. Tikkanen M, Nurmi M, Suorsa M, Danielsson R, Mamedov F, Styring S, Aro EM (2008) Phosphorylation-dependent regulation of excitation energy distribution between the two photosystems in higher plants. Biochim Biophys Acta 1777:425-432
242. M ) is independent of the redox state of the plastoquinone pool: a DCMU-inhibition study. Biochim Biophys Acta 1708:275-282 (Pubitemid 40824957)
243. Tóth SZ, Schansker G, Strasser RJ (2007) A non-invasive assay of the plastoquinone pool redox state based on the OJIP-transient. Photosynth Res 93:193-203 (Pubitemid 47310293)
244. Trebst A (2003) Function of beta-carotene and tocopherol in photosystem II. Z Naturforsch C 58:609-620
245. Trissl H-W, Gao Y, Wulf K (1993) Theoretical fluorescence induction curves derived from coupled differential equations describing the primary photochemistry of photosystem II by an exciton-radical pair equilibrium. Biophys J 64:974-988 (Pubitemid 23143263)
246. Tyystjärvi E (2013) Photoinhibition of Photosystem II. Int Rev Cell Mol Biol 300:243-303
247. Tyystjärvi E, Aro E-M (1996) The rate constant of photoinhibition, measured in lincomycin-treated leaves, is directly proportional to light intensity. Proc Natl Acad Sci USA 93:2213-2218 (Pubitemid 26079908)
248. Tyystjärvi E, Vass I (2004) Light emission as a probe of charge separation and recombination in the photosynthetic apparatus: relation of prompt fluorescence to delayed light emission and thermoluminescence. In: Papageorgiou GC, Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis. Series: advances in photosynthesis and respiration, vol 19. Kluwer Academic Publishers, Dordrecht, pp 363-388
249. Tyystjärvi E, Kettunen R, Aro E-M (1994) The rate constant of photoinhibition in vitro is independent of the antenna size of Photosystem II but depends on temperature. Biochim Biophys Acta 1186:177-185 (Pubitemid 24259254)
250. Tyystjärvi E, Rantamäki S, Tyystjärvi J (2009) Connectivity of Photosystem II is the physical basis of retrapping in photosynthetic thermoluminescence. Biophys J 96:3735-3743
251. Umena Y, Kawakami K, Shen J-R, Kamiya N (2011) Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å. Nature 473:55-60
252. Vallon O, Wollman FA, Olive J (1986) Lateral distribution of the main protein complexes of the photosynthetic apparatus in Chlamydomonas reinhardtii and in spinach. An immunocytochemical study using intact thylakoid membranes and a PS II-enriched membrane preparation. Photobiochem Photobiophys 12:203-220
253. 6 f complexes along thylakoid membranes upon state transitions. Proc Natl Acad Sci USA 88:8262-8266 (Pubitemid 21915337)
254. van Amerongen H, Croce R (2013) Light harvesting in photosystem II. Photosynth Res. doi: 10.1007/s11120-013-9824-3
255. van Amerongen H, Dekker JP (2003) Light-harvesting in photosystem II. In: Green BR, Parsons WW (eds) Series: advances in photosynthesis and respiration, vol 13. Kluwer Academic Publishers, Dordrecht, pp 219-251
256. van Gorkom HJ, Yocum CF (2005) The calcium and chloride cofactors. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 307-328
257. van Rensen JJS, Klimov V (2005) Bicarbonate interactions. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 329-345
258. Vass I (2012) Molecular mechanisms of photodamage in the Photosystem II complex. Biochim Biophys Acta 1817:209-217
259. Vičánková A, Kutik J (2005) Chloroplast ultrastructural development in vascular bundle sheath cells of two different maize (Zea mays L.) genotypes. Plant Soil Environ 51:491-495 (Pubitemid 41737928)
260. Vollmar M, Schlieper D, Winn M, Büchner C, Groth G (2009) Structure of the c14 rotor ring of the proton translocating chloroplast ATP synthase. J Biol Chem 284:18228-18235
261. Vredenberg WJ (2004) System analysis of photoelectrochemical control of chlorophyll fluorescence in terms of trapping models of Photosystem II: a challenging view. In: Papageorgiou GC, Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis. Springer, Dordrecht, pp 133-172
262. Witt HT (2005) Photosystem II: structural elements, the first 3D crystal structure and functional implications. In: Wydrzynski TJ, Satoh K (eds) Photosystem II: the light-driven water: plastoquinone oxidoreductase. Kluwer Academic Publishers, Dordrecht, pp 425-447
263. Wydzynski TJ, Satoh K (eds) (2005) Photosystem II. The light-driven water: plastoquinone oxidoreductase. Springer, The Netherlands
264. Wykoff DD, Davies JP, Melis A, Grossman AR (1998) The regulation of photosynthetic electron transport during nutrient deprivation in Chlamydomonas reinhardtii. Plant Physiol 117:129-139 (Pubitemid 128652786)
265. Yamamoto H, Kato H, Shinzaki Y, Horiguchi S, Shikanai T, Hase T, Endo T, Nishioka M, Makino A, Tomizawa KI, Miyake C (2006) Ferredoxin limits cyclic electron flow around PSI (CEF-PSI) in higher plants - stimulation of CEF-PSI enhances non-photochemical quenching of Chl fluorescence in transplastomic tobacco. Plant Cell Physiol 47:1355-1371 (Pubitemid 44684534)
266. Zellnig G, Zechmann B, Perktold A (2004) Morphological and quantitative data of plastids and mitochondria within drought-stressed spinach leaves. Protoplasma 223:221-227 (Pubitemid 38893477)