-
1
-
-
79251555660
-
VennDiagram: A package for the generation of highly-customizable Venn and Euler diagrams in R
-
Chen,H. and Boutros,P.C. (2011) VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinformatics., 12, 35.
-
(2011)
BMC Bioinformatics.
, vol.12
, pp. 35
-
-
Chen, H.1
Boutros, P.C.2
-
2
-
-
44449089166
-
GeneVenn - A web application for comparing gene lists using Venn diagrams
-
Pirooznia,M., Nagarajan,V. and Deng,Y. (2007) GeneVenn-a web application for comparing gene lists using Venn diagrams. Bioinformation, 1, 420-422.
-
(2007)
Bioinformation
, vol.1
, pp. 420-422
-
-
Pirooznia, M.1
Nagarajan, V.2
Deng, Y.3
-
3
-
-
56449107474
-
BioVenn - A web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
-
Hulsen,T., de Vlieg,J. and Alkema,W. (2008) BioVenn-a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams. BMC Genomics., 9, 488.
-
(2008)
BMC Genomics.
, vol.9
, pp. 488
-
-
Hulsen, T.1
De Vlieg, J.2
Alkema, W.3
-
4
-
-
63449107173
-
A general modular framework for gene set enrichment analysis
-
Ackermann,M. and Strimmer,K. (2009) A general modular framework for gene set enrichment analysis. BMC Bioinformatics., 10, 47.
-
(2009)
BMC Bioinformatics.
, vol.10
, pp. 47
-
-
Ackermann, M.1
Strimmer, K.2
-
5
-
-
42449094561
-
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
-
Kestler,H.A., Muller,A., Kraus,J.M., Buchholz,M., Gress,T.M., Liu,H., Kane,D.W., Zeeberg,B.R. and Weinstein,J.N. (2008) VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinformatics., 9, 67.
-
(2008)
BMC Bioinformatics.
, vol.9
, pp. 67
-
-
Kestler, H.A.1
Muller, A.2
Kraus, J.M.3
Buchholz, M.4
Gress, T.M.5
Liu, H.6
Kane, D.W.7
Zeeberg, B.R.8
Weinstein, J.N.9
-
6
-
-
34548742517
-
Identification of functional modules using network topology and high-throughput data
-
Ulitsky,I. and Shamir,R. (2007) Identification of functional modules using network topology and high-throughput data. BMC Syst. Biol., 1, 8.
-
(2007)
BMC Syst. Biol.
, vol.1
, pp. 8
-
-
Ulitsky, I.1
Shamir, R.2
-
7
-
-
36349011849
-
Genes2Networks: Connecting lists of gene symbols using mammalian protein interactions databases
-
Berger,S.I., Posner,J.M. and Ma'ayan,A. (2007) Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases. BMC Bioinformatics., 8, 372.
-
(2007)
BMC Bioinformatics.
, vol.8
, pp. 372
-
-
Berger, S.I.1
Posner, J.M.2
Ma'ayan, A.3
-
8
-
-
77949431355
-
Lists2Networks: Integrated analysis of gene/protein lists
-
Lachmann,A. and Ma'ayan,A. (2010) Lists2Networks: integrated analysis of gene/protein lists. BMC Bioinformatics., 11, 87.
-
(2010)
BMC Bioinformatics.
, vol.11
, pp. 87
-
-
Lachmann, A.1
Ma'ayan, A.2
-
9
-
-
67849101190
-
SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks
-
Minguez,P., Gotz,S., Montaner,D., Al-Shahrour,F. and Dopazo,J. (2009) SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res., 37, W109-W114.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Minguez, P.1
Gotz, S.2
Montaner, D.3
Al-Shahrour, F.4
Dopazo, J.5
-
10
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon,P., Markiel,A., Ozier,O., Baliga,N.S., Wang,J.T., Ramage,D., Amin,N., Schwikowski,B. and Ideker,T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genom. Res., 13, 2498-2504.
-
(2003)
Genom. Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
11
-
-
17444417122
-
Generalized Venn diagrams: A new method of visualizing complex genetic set relations
-
Kestler,H.A., Muller,A., Gress,T.M. and Buchholz,M. (2005) Generalized Venn diagrams: a new method of visualizing complex genetic set relations. Bioinformatics, 21, 1592-1595.
-
(2005)
Bioinformatics
, vol.21
, pp. 1592-1595
-
-
Kestler, H.A.1
Muller, A.2
Gress, T.M.3
Buchholz, M.4
-
12
-
-
48249137780
-
Unraveling protein networks with power graph analysis
-
Royer,L., Reimann,M., Andreopoulos,B. and Schroeder,M. (2008) Unraveling protein networks with power graph analysis. PLoS Comput. Biol., 4, e1000108.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Royer, L.1
Reimann, M.2
Andreopoulos, B.3
Schroeder, M.4
-
13
-
-
84881455143
-
Mentha: A resource for browsing integrated protein-interaction networks
-
Calderone,A., Castagnoli,L. and Cesareni,G. (2013) mentha: a resource for browsing integrated protein-interaction networks. Nat. Methods, 10, 690-691.
-
(2013)
Nat. Methods
, vol.10
, pp. 690-691
-
-
Calderone, A.1
Castagnoli, L.2
Cesareni, G.3
-
14
-
-
84859345028
-
ANAP: An integrated knowledge base for Arabidopsis protein interaction network analysis
-
Wang,C., Marshall,A., Zhang,D. and Wilson,Z.A. (2012) ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis. Plant Physiol., 158, 1523-1533.
-
(2012)
Plant Physiol.
, vol.158
, pp. 1523-1533
-
-
Wang, C.1
Marshall, A.2
Zhang, D.3
Wilson, Z.A.4
-
15
-
-
79955903017
-
PRIN: A predicted rice interactome network
-
Gu,H., Zhu,P., Jiao,Y., Meng,Y. and Chen,M. (2011) PRIN: a predicted rice interactome network. BMC Bioinformatics., 12, 161.
-
(2011)
BMC Bioinformatics.
, vol.12
, pp. 161
-
-
Gu, H.1
Zhu, P.2
Jiao, Y.3
Meng, Y.4
Chen, M.5
-
16
-
-
84861212058
-
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis
-
Araki,H., Knapp,C., Tsai,P. and Print,C. (2012) GeneSetDB: a comprehensive meta-database, statistical and visualisation framework for gene set analysis. FEBS Open Bio., 2, 76-82.
-
(2012)
FEBS Open Bio.
, vol.2
, pp. 76-82
-
-
Araki, H.1
Knapp, C.2
Tsai, P.3
Print, C.4
-
17
-
-
84883575104
-
PlantGSEA: A gene set enrichment analysis toolkit for plant community
-
Yi,X., Du,Z. and Su,Z. (2013) PlantGSEA: a gene set enrichment analysis toolkit for plant community. Nucleic Acids Res., 41, W98-W103.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Yi, X.1
Du, Z.2
Su, Z.3
-
18
-
-
77956548953
-
Cytoscape Web: An interactive web-based network browser
-
Lopes,C.T., Franz,M., Kazi,F., Donaldson,S.L.,Morris,Q. and Bader,G.D. (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics, 26, 2347-2348.
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
-
19
-
-
84857483338
-
A gene regulatory network for root epidermis cell differentiation in Arabidopsis
-
Bruex,A., Kainkaryam,R.M.,Wieckowski,Y., Kang,Y.H., Bernhardt,C., Xia,Y., Zheng,X., Wang,J.Y., Lee,M.M., Benfey,P. et al. (2012) A gene regulatory network for root epidermis cell differentiation in Arabidopsis. PLoS Genet., 8, e1002446.
-
(2012)
PLoS Genet.
, vol.8
-
-
Bruex, A.1
Kainkaryam, R.M.2
Wieckowski, Y.3
Kang, Y.H.4
Bernhardt, C.5
Xia, Y.6
Zheng, X.7
Wang, J.Y.8
Lee, M.M.9
Benfey, P.10
-
20
-
-
77954275721
-
R spider: A network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases
-
Antonov,A.V., Schmidt,E.E., Dietmann,S., Krestyaninova,M. and Hermjakob,H. (2010) R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. Nucleic Acids Res., 38, W78-W83.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Antonov, A.V.1
Schmidt, E.E.2
Dietmann, S.3
Krestyaninova, M.4
Hermjakob, H.5
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