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Volumn 42, Issue W1, 2014, Pages

DDI-CPI, a server that predicts drug-drug interactions through implementing the chemical-protein interactome

Author keywords

[No Author keywords available]

Indexed keywords

ISOCARBOXAZID; LINEZOLID; NARATRIPTAN; SERTRALINE;

EID: 84904806013     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku433     Document Type: Article
Times cited : (72)

References (47)
  • 1
    • 58149269468 scopus 로고    scopus 로고
    • Use of prescription and over-the-counter medications and dietary supplements among older adults in the United States
    • Qato,D.M., Alexander,G.C., Conti,R.M., Johnson,M., Schumm,P. and Lindau,S.T. (2008) Use of prescription and over-the-counter medications and dietary supplements among older adults in the United States. JAMA, 300, 2867-2878.
    • (2008) JAMA , vol.300 , pp. 2867-2878
    • Qato, D.M.1    Alexander, G.C.2    Conti, R.M.3    Johnson, M.4    Schumm, P.5    Lindau, S.T.6
  • 2
    • 0036404781 scopus 로고    scopus 로고
    • GPs' views on computerized drug interaction alerts: Questionnaire survey
    • Magnus,D., Rodgers,S. and Avery,A.J. (2002) GPs' views on computerized drug interaction alerts: questionnaire survey. J. Clin. Pharm. Ther., 27, 377-382.
    • (2002) J. Clin. Pharm. Ther. , vol.27 , pp. 377-382
    • Magnus, D.1    Rodgers, S.2    Avery, A.J.3
  • 3
    • 10744232330 scopus 로고    scopus 로고
    • The conduct of in vitro and in vivo drug-drug interaction studies: A pharmaceutical research and manufacturers of America (PhRMA) perspective
    • Bjornsson,T.D., Callaghan,J.T., Einolf,H.J., Fischer,V., Gan,L., Grimm,S., Kao,J., King,S.P., Miwa,G., Ni,L. et al. (2003) The conduct of in vitro and in vivo drug-drug interaction studies: a pharmaceutical research and manufacturers of America (PhRMA) perspective. Drug Metab. Dispos., 31, 815-832.
    • (2003) Drug Metab. Dispos. , vol.31 , pp. 815-832
    • Bjornsson, T.D.1    Callaghan, J.T.2    Einolf, H.J.3    Fischer, V.4    Gan, L.5    Grimm, S.6    Kao, J.7    King, S.P.8    Miwa, G.9    Ni, L.10
  • 4
  • 6
    • 4043179101 scopus 로고    scopus 로고
    • Drug interactions in oncology
    • Beijnen,J.H. and Schellens,J.H. (2004) Drug interactions in oncology. Lancet Oncol., 5, 489-496.
    • (2004) Lancet Oncol. , vol.5 , pp. 489-496
    • Beijnen, J.H.1    Schellens, J.H.2
  • 7
    • 79955685155 scopus 로고    scopus 로고
    • Advances in human cytochrome p450 and personalized medicine
    • Chen,Q., Zhang,T.,Wang,J.F. and Wei,D.Q. (2011) Advances in human cytochrome p450 and personalized medicine. Curr. Drug Metab., 12, 436-444.
    • (2011) Curr. Drug Metab. , vol.12 , pp. 436-444
    • Chen, Q.1    Zhang, T.2    Wang, J.F.3    Wei, D.Q.4
  • 8
    • 84875992866 scopus 로고    scopus 로고
    • Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network
    • Huang,J., Niu,C., Green,C.D., Yang,L., Mei,H. and Han,J.D. (2013) Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network. PLoS Comput. Biol., 9, e1002998.
    • (2013) PLoS Comput. Biol. , vol.9
    • Huang, J.1    Niu, C.2    Green, C.D.3    Yang, L.4    Mei, H.5    Han, J.D.6
  • 9
    • 36949009488 scopus 로고    scopus 로고
    • In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators
    • Xie,L., Wang,J. and Bourne,P.E. (2007) In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators. PLoS Comput. Biol., 3, e217.
    • (2007) PLoS Comput. Biol. , vol.3
    • Xie, L.1    Wang, J.2    Bourne, P.E.3
  • 10
    • 67049100457 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: Identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
    • Xie,L., Li,J. and Bourne,P.E. (2009) Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors. PLoS Comput. Biol., 5, e1000387.
    • (2009) PLoS Comput. Biol. , vol.5
    • Xie, L.1    Li, J.2    Bourne, P.E.3
  • 11
    • 84864231551 scopus 로고    scopus 로고
    • INDI: A computational framework for inferring drug interactions and their associated recommendations
    • Gottlieb,A., Stein,G.Y., Oron,Y., Ruppin,E. and Sharan,R. (2012) INDI: a computational framework for inferring drug interactions and their associated recommendations. Mol. Syst. Biol., 8, 592.
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 592
    • Gottlieb, A.1    Stein, G.Y.2    Oron, Y.3    Ruppin, E.4    Sharan, R.5
  • 12
    • 0035415865 scopus 로고    scopus 로고
    • Screening of drug candidates for their drug-drug interaction potential
    • Rodrigues,A.D. and Lin,J.H. (2001) Screening of drug candidates for their drug-drug interaction potential. Curr. Opin. Chem. Biol., 5, 396-401.
    • (2001) Curr. Opin. Chem. Biol. , vol.5 , pp. 396-401
    • Rodrigues, A.D.1    Lin, J.H.2
  • 13
    • 0034902212 scopus 로고    scopus 로고
    • Application of in silico approaches to predicting drug-drug interactions
    • Ekins,S. and Wrighton,S.A. (2001) Application of in silico approaches to predicting drug-drug interactions. J. Pharmacol. Toxicol. Methods, 45, 65-69.
    • (2001) J. Pharmacol. Toxicol. Methods , vol.45 , pp. 65-69
    • Ekins, S.1    Wrighton, S.A.2
  • 14
    • 79952607777 scopus 로고    scopus 로고
    • In silico prediction of efavirenz and rifampicin drug-drug interaction considering weight and CYP2B6 phenotype
    • Rekic,D., Roshammar,D., Mukonzo,J. and Ashton,M. (2011) In silico prediction of efavirenz and rifampicin drug-drug interaction considering weight and CYP2B6 phenotype. Br. J. Clin. Pharmacol., 71, 536-543.
    • (2011) Br. J. Clin. Pharmacol. , vol.71 , pp. 536-543
    • Rekic, D.1    Roshammar, D.2    Mukonzo, J.3    Ashton, M.4
  • 16
    • 84856805878 scopus 로고    scopus 로고
    • A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports
    • Tatonetti,N.P., Fernald,G.H. and Altman,R.B. (2012) A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. J. Am. Med. Inform. Assoc., 19, 79-85.
    • (2012) J. Am. Med. Inform. Assoc. , vol.19 , pp. 79-85
    • Tatonetti, N.P.1    Fernald, G.H.2    Altman, R.B.3
  • 17
    • 84874766004 scopus 로고    scopus 로고
    • Detection of drug-drug interactions by modeling interaction profile fingerprints
    • Vilar,S., Uriarte,E., Santana,L., Tatonetti,N.P. and Friedman,C. (2013) Detection of drug-drug interactions by modeling interaction profile fingerprints. PLoS One, 8, e58321.
    • (2013) PLoS One , vol.8
    • Vilar, S.1    Uriarte, E.2    Santana, L.3    Tatonetti, N.P.4    Friedman, C.5
  • 18
    • 79953669856 scopus 로고    scopus 로고
    • Exploring off-targets and off-systems for adverse drug reactions via chemical-protein interactome-clozapine-induced agranulocytosis as a case study
    • Yang,L., Wang,K., Chen,J., Jegga,A.G., Luo,H., Shi,L., Wan,C., Guo,X., Qin,S., He,G. et al. (2011) Exploring off-targets and off-systems for adverse drug reactions via chemical-protein interactome-clozapine-induced agranulocytosis as a case study. PLoS Comput. Biol., 7, e1002016.
    • (2011) PLoS Comput. Biol. , vol.7
    • Yang, L.1    Wang, K.2    Chen, J.3    Jegga, A.G.4    Luo, H.5    Shi, L.6    Wan, C.7    Guo, X.8    Qin, S.9    He, G.10
  • 19
    • 77949760141 scopus 로고    scopus 로고
    • Identifying unexpected therapeutic targets via chemical-protein interactome
    • Yang,L., Chen,J., Shi,L., Hudock,M.P., Wang,K. and He,L. (2010) Identifying unexpected therapeutic targets via chemical-protein interactome. PLoS One, 5, e9568.
    • (2010) PLoS One , vol.5
    • Yang, L.1    Chen, J.2    Shi, L.3    Hudock, M.P.4    Wang, K.5    He, L.6
  • 20
    • 0035342428 scopus 로고    scopus 로고
    • Ligand-protein inverse docking and its potential use in the computer search of protein targets of a small molecule
    • Chen,Y.Z. and Zhi,D.G. (2001) Ligand-protein inverse docking and its potential use in the computer search of protein targets of a small molecule. Proteins, 43, 217-226.
    • (2001) Proteins , vol.43 , pp. 217-226
    • Chen, Y.Z.1    Zhi, D.G.2
  • 22
    • 84879237604 scopus 로고    scopus 로고
    • Proteome-scale docking: Myth and reality
    • Rognan,D. (2013) Proteome-scale docking: myth and reality. Drug Discov. Today Technol., 10, e403-e409.
    • (2013) Drug Discov. Today Technol. , vol.10
    • Rognan, D.1
  • 23
    • 77957954504 scopus 로고    scopus 로고
    • A structure-based approach for mapping adverse drug reactions to the perturbation of underlying biological pathways
    • Wallach,I., Jaitly,N. and Lilien,R. (2010) A structure-based approach for mapping adverse drug reactions to the perturbation of underlying biological pathways. PLoS One, 5, e12063.
    • (2010) PLoS One , vol.5
    • Wallach, I.1    Jaitly, N.2    Lilien, R.3
  • 24
    • 68249128647 scopus 로고    scopus 로고
    • Harvesting candidate genes responsible for serious adverse drug reactions from a chemical-protein interactome
    • Yang,L., Chen,J. and He,L. (2009) Harvesting candidate genes responsible for serious adverse drug reactions from a chemical-protein interactome. PLoS Comput. Biol., 5, e1000441.
    • (2009) PLoS Comput. Biol. , vol.5
    • Yang, L.1    Chen, J.2    He, L.3
  • 25
    • 67849110009 scopus 로고    scopus 로고
    • SePreSA: A server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical-protein interactome
    • Yang,L., Luo,H., Chen,J., Xing,Q. and He,L. (2009) SePreSA: a server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical-protein interactome. Nucleic Acids Res., 37, W406-W412.
    • (2009) Nucleic Acids Res. , vol.37
    • Yang, L.1    Luo, H.2    Chen, J.3    Xing, Q.4    He, L.5
  • 26
    • 79959926410 scopus 로고    scopus 로고
    • DRAR-CPI: A server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome
    • Luo,H., Chen,J., Shi,L., Mikailov,M., Zhu,H., Wang,K., He,L. and Yang,L. (2011) DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome. Nucleic Acids Res., 39, W492-W498.
    • (2011) Nucleic Acids Res. , vol.39
    • Luo, H.1    Chen, J.2    Shi, L.3    Mikailov, M.4    Zhu, H.5    Wang, K.6    He, L.7    Yang, L.8
  • 29
    • 4043162793 scopus 로고    scopus 로고
    • VEGA - An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming
    • Pedretti,A., Villa,L. and Vistoli,G. (2004) VEGA-an open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming. J. Comput. Aided Mol. Des., 18, 167-173.
    • (2004) J. Comput. Aided Mol. Des. , vol.18 , pp. 167-173
    • Pedretti, A.1    Villa, L.2    Vistoli, G.3
  • 32
    • 2542530042 scopus 로고    scopus 로고
    • The PDBbind database: Collection of binding affinities for protein-ligand complexes with known three-dimensional structures
    • Wang,R., Fang,X., Lu,Y. andWang,S. (2004) The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures. J. Med. Chem., 47, 2977-2980.
    • (2004) J. Med. Chem. , vol.47 , pp. 2977-2980
    • Wang, R.1    Fang, X.2    Lu Andwang Y, S.3
  • 33
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: A hub of integrated protein data
    • Magrane,M. and Consortium,U. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford), 2011, bar009.
    • (2011) Database (Oxford) , vol.2011
    • Magrane, M.1    Consortium, U.2
  • 34
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott,O. and Olson,A.J. (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem., 31, 455-461.
    • (2010) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 35
    • 84874445951 scopus 로고    scopus 로고
    • Consensus docking: Improving the reliability of docking in a virtual screening context
    • Houston,D.R. and Walkinshaw,M.D. (2013) Consensus docking: improving the reliability of docking in a virtual screening context. J. Chem. Inf. Model., 53, 384-390.
    • (2013) J. Chem. Inf. Model. , vol.53 , pp. 384-390
    • Houston, D.R.1    Walkinshaw, M.D.2
  • 38
    • 16644392819 scopus 로고    scopus 로고
    • Reverse-docking as a computational tool for the study of asymmetric organocatalysis
    • Harriman,D.J. and Deslongchamps,G. (2004) Reverse-docking as a computational tool for the study of asymmetric organocatalysis. J. Comput. Aided Mol. Des., 18, 303-308.
    • (2004) J. Comput. Aided Mol. Des. , vol.18 , pp. 303-308
    • Harriman, D.J.1    Deslongchamps, G.2
  • 39
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos,M., Kuhn,M., Gavin,A.C., Jensen,L.J. and Bork,P. (2008) Drug target identification using side-effect similarity. Science, 321, 263-266.
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.C.3    Jensen, L.J.4    Bork, P.5
  • 41
    • 0032878034 scopus 로고    scopus 로고
    • Determination of the human cytochrome P450 isoforms involved in the metabolism of zolmitriptan
    • Wild,M.J., McKillop,D. and Butters,C.J. (1999) Determination of the human cytochrome P450 isoforms involved in the metabolism of zolmitriptan. Xenobiotica, 29, 847-857.
    • (1999) Xenobiotica , vol.29 , pp. 847-857
    • Wild, M.J.1    McKillop, D.2    Butters, C.J.3
  • 42
    • 34547424537 scopus 로고    scopus 로고
    • Linezolid-associated peripheral and optic neuropathy, lactic acidosis, and serotonin syndrome
    • Narita,M., Tsuji,B.T. and Yu,V.L. (2007) Linezolid-associated peripheral and optic neuropathy, lactic acidosis, and serotonin syndrome. Pharmacotherapy, 27, 1189-1197.
    • (2007) Pharmacotherapy , vol.27 , pp. 1189-1197
    • Narita, M.1    Tsuji, B.T.2    Yu, V.L.3
  • 44
    • 37549041370 scopus 로고    scopus 로고
    • Concomitant triptan and SSRI or SNRI use: A risk for serotonin syndrome
    • Sclar,D.A., Robison,L.M. and Skaer,T.L. (2008) Concomitant triptan and SSRI or SNRI use: a risk for serotonin syndrome. Headache, 48, 126-129.
    • (2008) Headache , vol.48 , pp. 126-129
    • Sclar, D.A.1    Robison, L.M.2    Skaer, T.L.3
  • 45
    • 0037310871 scopus 로고    scopus 로고
    • Inhibition of transporter-mediated hepatic uptake as a mechanism for drug-drug interaction between cerivastatin and cyclosporin A
    • Shitara,Y., Itoh,T., Sato,H., Li,A.P. and Sugiyama,Y. (2003) Inhibition of transporter-mediated hepatic uptake as a mechanism for drug-drug interaction between cerivastatin and cyclosporin A. J. Pharmacol. Exp. Ther., 304, 610-616.
    • (2003) J. Pharmacol. Exp. Ther. , vol.304 , pp. 610-616
    • Shitara, Y.1    Itoh, T.2    Sato, H.3    Li, A.P.4    Sugiyama, Y.5
  • 46
    • 0034015751 scopus 로고    scopus 로고
    • Inhibitory effects of amiodarone and its N-deethylated metabolite on human cytochrome P450 activities: Prediction of in vivo drug interactions
    • Ohyama,K., Nakajima,M., Suzuki,M., Shimada,N., Yamazaki,H. and Yokoi,T. (2000) Inhibitory effects of amiodarone and its N-deethylated metabolite on human cytochrome P450 activities: prediction of in vivo drug interactions. Br. J. Clin. Pharmacol., 49, 244-253.
    • (2000) Br. J. Clin. Pharmacol. , vol.49 , pp. 244-253
    • Ohyama, K.1    Nakajima, M.2    Suzuki, M.3    Shimada, N.4    Yamazaki, H.5    Yokoi, T.6
  • 47
    • 77951074736 scopus 로고    scopus 로고
    • Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli
    • Takatsuka,Y., Chen,C. and Nikaido,H. (2010) Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 107, 6559-6565.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 6559-6565
    • Takatsuka, Y.1    Chen, C.2    Nikaido, H.3


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