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Volumn 78, Issue 1, 2014, Pages 277-289

The impact of calibration and clock-model choice on molecular estimates of divergence times

Author keywords

Bayesian phylogenetics; Calibration; Date estimation; Divergence times; Evolutionary rate; Relaxed molecular clock

Indexed keywords

BAYES THEOREM; BIOLOGICAL MODEL; CALIBRATION; COMPUTER SIMULATION; FOSSIL; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; SIMIAN FOAMY VIRUS;

EID: 84904666887     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.05.032     Document Type: Article
Times cited : (117)

References (76)
  • 2
    • 84865475040 scopus 로고    scopus 로고
    • Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
    • Baele G., Lemey P., Bedford T., Rambaut A., Suchard M.A., Alekseyenko A.V. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol. Biol. Evol. 2012, 29:2157-2167.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 2157-2167
    • Baele, G.1    Lemey, P.2    Bedford, T.3    Rambaut, A.4    Suchard, M.A.5    Alekseyenko, A.V.6
  • 3
    • 84877663836 scopus 로고    scopus 로고
    • Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics
    • Baele G., Li W.L.S., Drummond A.J., Suchard M.A., Lemey P. Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics. Mol. Biol. Evol. 2013, 30:239-243.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 239-243
    • Baele, G.1    Li, W.L.S.2    Drummond, A.J.3    Suchard, M.A.4    Lemey, P.5
  • 4
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the tree of life
    • Benton M.J., Donoghue P.C.J. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 2007, 24:26-53.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.J.2
  • 5
    • 84904598169 scopus 로고    scopus 로고
    • An experimentally determined evolutionary model dramatically improves phylogenetic fit. bioRxiv. doi:.
    • Bloom, J.D., 2014. An experimentally determined evolutionary model dramatically improves phylogenetic fit. bioRxiv. doi:. doi:10.1101/002899.
    • (2014)
    • Bloom, J.D.1
  • 6
    • 79952128500 scopus 로고    scopus 로고
    • Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards
    • Brandley M.C., Wang Y., Guo X., de Oca A.N.M., Fería-Ortíz M., Hikida T., Ota H. Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Syst. Biol. 2011, 60:3-15.
    • (2011) Syst. Biol. , vol.60 , pp. 3-15
    • Brandley, M.C.1    Wang, Y.2    Guo, X.3    de Oca, A.N.M.4    Fería-Ortíz, M.5    Hikida, T.6    Ota, H.7
  • 7
    • 77649255616 scopus 로고    scopus 로고
    • Bayesian dating of shallow phylogenies with a relaxed clock
    • Brown R.P., Yang Z. Bayesian dating of shallow phylogenies with a relaxed clock. Syst. Biol. 2010, 59:119-131.
    • (2010) Syst. Biol. , vol.59 , pp. 119-131
    • Brown, R.P.1    Yang, Z.2
  • 8
    • 80053362389 scopus 로고    scopus 로고
    • Rate variation and estimation of divergence times using strict and relaxed clocks
    • Brown R., Yang Z. Rate variation and estimation of divergence times using strict and relaxed clocks. BMC Evol. Biol. 2011, 11:271.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 271
    • Brown, R.1    Yang, Z.2
  • 10
    • 0037565011 scopus 로고    scopus 로고
    • Extracting time from phylogenies: positive interplay between fossil and genetic data
    • Conroy C.J., Van Tuinen M. Extracting time from phylogenies: positive interplay between fossil and genetic data. J. Mammal. 2003, 84:444-455.
    • (2003) J. Mammal. , vol.84 , pp. 444-455
    • Conroy, C.J.1    Van Tuinen, M.2
  • 11
    • 79959462209 scopus 로고    scopus 로고
    • Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times
    • Dos Reis M., Yang Z. Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times. Mol. Biol. Evol. 2011, 28:2161-2172.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2161-2172
    • Dos Reis, M.1    Yang, Z.2
  • 12
    • 84873505893 scopus 로고    scopus 로고
    • The unbearable uncertainty of Bayesian divergence time estimation
    • Dos Reis M., Yang Z. The unbearable uncertainty of Bayesian divergence time estimation. J. Syst. Evol. 2013, 51:30-43.
    • (2013) J. Syst. Evol. , vol.51 , pp. 30-43
    • Dos Reis, M.1    Yang, Z.2
  • 13
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 18
    • 42449137071 scopus 로고    scopus 로고
    • Selection of fossils for calibration of molecular dating models 1
    • Gandolfo M.A., Nixon K.C., Crepet W.L. Selection of fossils for calibration of molecular dating models 1. Ann. Missouri Bot. Gard. 2008, 95:34-42.
    • (2008) Ann. Missouri Bot. Gard. , vol.95 , pp. 34-42
    • Gandolfo, M.A.1    Nixon, K.C.2    Crepet, W.L.3
  • 20
    • 84865256173 scopus 로고    scopus 로고
    • A hierarchical Bayesian model for calibrating estimates of species divergence times
    • Heath T.A. A hierarchical Bayesian model for calibrating estimates of species divergence times. Syst. Biol. 2012, 61:793-809.
    • (2012) Syst. Biol. , vol.61 , pp. 793-809
    • Heath, T.A.1
  • 21
    • 84857198898 scopus 로고    scopus 로고
    • A dirichlet process prior for estimating lineage-specific substitution rates
    • Heath T.A., Holder M.T., Huelsenbeck J.P. A dirichlet process prior for estimating lineage-specific substitution rates. Mol. Biol. Evol. 2012, 29:939-955.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 939-955
    • Heath, T.A.1    Holder, M.T.2    Huelsenbeck, J.P.3
  • 22
    • 84555188625 scopus 로고    scopus 로고
    • Calibrated tree priors for relaxed phylogenetics and divergence time estimation
    • Heled J., Drummond A.J. Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Syst. Biol. 2012, 61:138-149.
    • (2012) Syst. Biol. , vol.61 , pp. 138-149
    • Heled, J.1    Drummond, A.J.2
  • 23
    • 84904616644 scopus 로고    scopus 로고
    • Calibrated birth-death phylogenetic time-tree priors for Bayesian inference. arXiv Prepr. arXiv1311.4921.
    • Heled, J., Drummond, A.J., 2013. Calibrated birth-death phylogenetic time-tree priors for Bayesian inference. arXiv Prepr. arXiv1311.4921.
    • (2013)
    • Heled, J.1    Drummond, A.J.2
  • 24
    • 34347329101 scopus 로고    scopus 로고
    • Calibrating molecular estimates of substitution rates and divergence times in birds
    • Ho S.Y.M. Calibrating molecular estimates of substitution rates and divergence times in birds. J. Avian Biol. 2007, 38:409-414.
    • (2007) J. Avian Biol. , vol.38 , pp. 409-414
    • Ho, S.Y.M.1
  • 25
    • 67649133122 scopus 로고    scopus 로고
    • An examination of phylogenetic models of substitution rate variation among lineages
    • Ho S.Y.W. An examination of phylogenetic models of substitution rate variation among lineages. Biol. Lett. 2009, 5:421-424.
    • (2009) Biol. Lett. , vol.5 , pp. 421-424
    • Ho, S.Y.W.1
  • 26
    • 31444442779 scopus 로고    scopus 로고
    • Molecular clocks: when times are a-changin'
    • Ho S.Y.W., Larson G. Molecular clocks: when times are a-changin'. Trends Genet. 2006, 22:79-83.
    • (2006) Trends Genet. , vol.22 , pp. 79-83
    • Ho, S.Y.W.1    Larson, G.2
  • 27
    • 70350103638 scopus 로고    scopus 로고
    • Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
    • Ho S.Y.W., Phillips M.J. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 2009, 58:367-380.
    • (2009) Syst. Biol. , vol.58 , pp. 367-380
    • Ho, S.Y.W.1    Phillips, M.J.2
  • 28
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho S.Y.W., Phillips M.J., Cooper A., Drummond A.J. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 2005, 22:1561-1568.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 29
    • 17744387938 scopus 로고    scopus 로고
    • Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation
    • Ho S.Y.W., Phillips M.J., Drummond A.J., Cooper A. Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation. Mol. Biol. Evol. 2005, 22:1355-1363.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1355-1363
    • Ho, S.Y.W.1    Phillips, M.J.2    Drummond, A.J.3    Cooper, A.4
  • 30
    • 0037377762 scopus 로고    scopus 로고
    • Molecular clocks and the puzzle of RNA virus origins
    • Holmes E.C. Molecular clocks and the puzzle of RNA virus origins. J. Virol. 2003, 77:3893-3897.
    • (2003) J. Virol. , vol.77 , pp. 3893-3897
    • Holmes, E.C.1
  • 31
    • 34547762740 scopus 로고    scopus 로고
    • The impact of fossils and taxon sampling on ancient molecular dating analyses
    • Hug L.A., Roger A.J. The impact of fossils and taxon sampling on ancient molecular dating analyses. Mol. Biol. Evol. 2007, 24:1889-1897.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1889-1897
    • Hug, L.A.1    Roger, A.J.2
  • 32
    • 72049121650 scopus 로고    scopus 로고
    • The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times
    • Inoue J., Donoghue P.C.J., Yang Z. The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times. Syst. Biol. 2010, 59:74-89.
    • (2010) Syst. Biol. , vol.59 , pp. 74-89
    • Inoue, J.1    Donoghue, P.C.J.2    Yang, Z.3
  • 33
    • 0035103260 scopus 로고    scopus 로고
    • Performance of a divergence time estimation method under a probabilistic model of rate evolution
    • Kishino H., Thorne J.L., Bruno W.J. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 2001, 18:352-361.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 352-361
    • Kishino, H.1    Thorne, J.L.2    Bruno, W.J.3
  • 35
    • 33644826560 scopus 로고    scopus 로고
    • Computing Bayes factors using thermodynamic integration
    • Lartillot N., Philippe H. Computing Bayes factors using thermodynamic integration. Syst. Biol. 2006, 55:195-207.
    • (2006) Syst. Biol. , vol.55 , pp. 195-207
    • Lartillot, N.1    Philippe, H.2
  • 36
    • 0032855033 scopus 로고    scopus 로고
    • Molecular clock calibrations and metazoan divergence dates
    • Lee M.S.Y. Molecular clock calibrations and metazoan divergence dates. J. Mol. Evol. 1999, 49:385-391.
    • (1999) J. Mol. Evol. , vol.49 , pp. 385-391
    • Lee, M.S.Y.1
  • 37
  • 38
    • 84862908923 scopus 로고    scopus 로고
    • Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics
    • Li W.L.S., Drummond A.J. Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics. Mol. Biol. Evol. 2012, 29:751-761.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 751-761
    • Li, W.L.S.1    Drummond, A.J.2
  • 39
    • 18144364012 scopus 로고    scopus 로고
    • Taxon sampling effects in molecular clock dating: an example from the African Restionaceae
    • Linder H.P., Hardy C.R., Rutschmann F. Taxon sampling effects in molecular clock dating: an example from the African Restionaceae. Mol. Phylogenet. Evol. 2005, 35:569-582.
    • (2005) Mol. Phylogenet. Evol. , vol.35 , pp. 569-582
    • Linder, H.P.1    Hardy, C.R.2    Rutschmann, F.3
  • 40
    • 79955364420 scopus 로고    scopus 로고
    • Evaluation of Bayesian models of substitution rate evolution-parental guidance versus mutual independence
    • Linder M., Britton T., Sennblad B. Evaluation of Bayesian models of substitution rate evolution-parental guidance versus mutual independence. Syst. Biol. 2011, 60:329-342.
    • (2011) Syst. Biol. , vol.60 , pp. 329-342
    • Linder, M.1    Britton, T.2    Sennblad, B.3
  • 42
    • 84555194967 scopus 로고    scopus 로고
    • Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches
    • Lukoschek V., Keogh J.S., Avise J.C. Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Syst. Biol. 2012, 61:22-43.
    • (2012) Syst. Biol. , vol.61 , pp. 22-43
    • Lukoschek, V.1    Keogh, J.S.2    Avise, J.C.3
  • 43
    • 4944255292 scopus 로고    scopus 로고
    • Dating lineages: molecular and paleontological approaches to the temporal framework of clades
    • Magallón S.A. Dating lineages: molecular and paleontological approaches to the temporal framework of clades. Int. J. Plant Sci. 2004, 165:S7-S21.
    • (2004) Int. J. Plant Sci. , vol.165
    • Magallón, S.A.1
  • 44
    • 43949092742 scopus 로고    scopus 로고
    • A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points
    • Marshall C.R. A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points. Am. Nat. 2008, 171:726-742.
    • (2008) Am. Nat. , vol.171 , pp. 726-742
    • Marshall, C.R.1
  • 45
    • 0035134159 scopus 로고    scopus 로고
    • Historical perspective of foamy virus epidemiology and infection
    • Meiering C.D., Linial M.L. Historical perspective of foamy virus epidemiology and infection. Clin. Microbiol. Rev. 2001, 14:165-176.
    • (2001) Clin. Microbiol. Rev. , vol.14 , pp. 165-176
    • Meiering, C.D.1    Linial, M.L.2
  • 46
    • 84876022648 scopus 로고    scopus 로고
    • Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages
    • Molak M., Lorenzen E.D., Shapiro B., Ho S.Y.W. Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages. Mol. Biol. Evol. 2013, 30:253-262.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 253-262
    • Molak, M.1    Lorenzen, E.D.2    Shapiro, B.3    Ho, S.Y.W.4
  • 47
    • 8144221423 scopus 로고    scopus 로고
    • Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection
    • Near T.J., Sanderson M.J. Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection. Philos. Trans. R. Soc. London. Ser. B: Biol. Sci. 2004, 359:1477-1483.
    • (2004) Philos. Trans. R. Soc. London. Ser. B: Biol. Sci. , vol.359 , pp. 1477-1483
    • Near, T.J.1    Sanderson, M.J.2
  • 48
    • 13944259078 scopus 로고    scopus 로고
    • Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles
    • Near T.J., Meylan P.A., Shaffer H.B. Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles. Am. Nat. 2005, 165:137-146.
    • (2005) Am. Nat. , vol.165 , pp. 137-146
    • Near, T.J.1    Meylan, P.A.2    Shaffer, H.B.3
  • 49
    • 84877929456 scopus 로고    scopus 로고
    • Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion
    • Paradis E. Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion. Mol. Phylogenet. Evol. 2013.
    • (2013) Mol. Phylogenet. Evol.
    • Paradis, E.1
  • 50
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis E., Claude J., Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 52
    • 67349118917 scopus 로고    scopus 로고
    • Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny
    • Phillips M.J. Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny. Gene 2009, 441:132-140.
    • (2009) Gene , vol.441 , pp. 132-140
    • Phillips, M.J.1
  • 53
    • 84904645818 scopus 로고    scopus 로고
    • R Core Team R: A Language and Environment for Statistical Computing. R Found. Stat. Comput.
    • R Core Team, 2008. R: A Language and Environment for Statistical Computing. R Found. Stat. Comput.
    • (2008)
  • 54
    • 0034044313 scopus 로고    scopus 로고
    • Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
    • Rambaut A. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 2000, 16:395-399.
    • (2000) Bioinformatics , vol.16 , pp. 395-399
    • Rambaut, A.1
  • 55
    • 34548556039 scopus 로고    scopus 로고
    • Inferring speciation times under an episodic molecular clock
    • Rannala B., Yang Z. Inferring speciation times under an episodic molecular clock. Syst. Biol. 2007, 56:453-466.
    • (2007) Syst. Biol. , vol.56 , pp. 453-466
    • Rannala, B.1    Yang, Z.2
  • 56
    • 33645030825 scopus 로고    scopus 로고
    • Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times
    • Rutschmann F. Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times. Divers. Distrib. 2006, 12:35-48.
    • (2006) Divers. Distrib. , vol.12 , pp. 35-48
    • Rutschmann, F.1
  • 57
    • 34547468349 scopus 로고    scopus 로고
    • Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points
    • Rutschmann F., Eriksson T., Salim K.A., Conti E. Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points. Syst. Biol. 2007, 56:591-608.
    • (2007) Syst. Biol. , vol.56 , pp. 591-608
    • Rutschmann, F.1    Eriksson, T.2    Salim, K.A.3    Conti, E.4
  • 58
    • 34547481471 scopus 로고    scopus 로고
    • Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds
    • Sanders K.L., Lee M.S.Y. Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds. Biol. Lett. 2007, 3:275-279.
    • (2007) Biol. Lett. , vol.3 , pp. 275-279
    • Sanders, K.L.1    Lee, M.S.Y.2
  • 59
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson M.J. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 1997, 14:1218-1231.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1218-1231
    • Sanderson, M.J.1
  • 60
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach
    • Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 2002, 19:101-109.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 63
    • 79951548848 scopus 로고    scopus 로고
    • Phangorn: phylogenetic analysis in R
    • Schliep K.P. Phangorn: phylogenetic analysis in R. Bioinformatics 2011, 27:592-593.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 64
    • 0036433299 scopus 로고    scopus 로고
    • Dating the time of origin of major clades: molecular clocks and the fossil record
    • Smith A.B., Peterson K.J. Dating the time of origin of major clades: molecular clocks and the fossil record. Annu. Rev. Earth Planet. Sci. 2002, 30:65-88.
    • (2002) Annu. Rev. Earth Planet. Sci. , vol.30 , pp. 65-88
    • Smith, A.B.1    Peterson, K.J.2
  • 65
    • 0037007019 scopus 로고    scopus 로고
    • Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils
    • Soltis P.S., Soltis D.E., Savolainen V., Crane P.R., Barraclough T.G. Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils. Proc. Natl. Acad. Sci. USA 2002, 99:4430-4435.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 4430-4435
    • Soltis, P.S.1    Soltis, D.E.2    Savolainen, V.3    Crane, P.R.4    Barraclough, T.G.5
  • 68
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • Thorne J.L., Kishino H., Painter I.S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 1998, 15:1647-1657.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 69
    • 0345832031 scopus 로고    scopus 로고
    • The effect of external and internal fossil calibrations on the avian evolutionary timescale
    • Van Tuinen M., Hedges S.B. The effect of external and internal fossil calibrations on the avian evolutionary timescale. J. Paleontol. 2004, 78.
    • (2004) J. Paleontol. , vol.78
    • Van Tuinen, M.1    Hedges, S.B.2
  • 70
    • 33749602096 scopus 로고    scopus 로고
    • Detecting the node-density artifact in phylogeny reconstruction
    • Venditti C., Meade A., Pagel M. Detecting the node-density artifact in phylogeny reconstruction. Syst. Biol. 2006, 55:637-643.
    • (2006) Syst. Biol. , vol.55 , pp. 637-643
    • Venditti, C.1    Meade, A.2    Pagel, M.3
  • 71
    • 84863012163 scopus 로고    scopus 로고
    • Exploring uncertainty in the calibration of the molecular clock
    • Warnock R.C.M., Yang Z., Donoghue P.C.J. Exploring uncertainty in the calibration of the molecular clock. Biol. Lett. 2012, 8:156-159.
    • (2012) Biol. Lett. , vol.8 , pp. 156-159
    • Warnock, R.C.M.1    Yang, Z.2    Donoghue, P.C.J.3
  • 72
    • 20144362109 scopus 로고    scopus 로고
    • Molecular dating when rates vary
    • Welch J.J., Bromham L. Molecular dating when rates vary. Trends Ecol. Evol. 2005, 20:320-327.
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 320-327
    • Welch, J.J.1    Bromham, L.2
  • 73
    • 79951566251 scopus 로고    scopus 로고
    • Improving marginal likelihood estimation for Bayesian phylogenetic model selection
    • Xie W., Lewis P.O., Fan Y., Kuo L., Chen M.-H. Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Syst. Biol. 2011, 60:150-160.
    • (2011) Syst. Biol. , vol.60 , pp. 150-160
    • Xie, W.1    Lewis, P.O.2    Fan, Y.3    Kuo, L.4    Chen, M.-H.5
  • 74
    • 28944451210 scopus 로고    scopus 로고
    • Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
    • Yang Z., Rannala B. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 2006, 23:212-226.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 212-226
    • Yang, Z.1    Rannala, B.2
  • 75
    • 0033933640 scopus 로고    scopus 로고
    • Estimation of primate speciation dates using local molecular clocks
    • Yoder A.D., Yang Z. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 2000, 17:1081-1090.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1081-1090
    • Yoder, A.D.1    Yang, Z.2
  • 76
    • 84904688361 scopus 로고
    • Molecular disease, evolution and genetic heterogeneity. In: Kasha, M., Pullman, B. (Eds.), New York.
    • Zuckerkandl, E., Pauling, L., 1962. Molecular disease, evolution and genetic heterogeneity. In: Kasha, M., Pullman, B. (Eds.), New York.
    • (1962)
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.