-
1
-
-
70350116756
-
Calibrating and constraining molecular clocks
-
Hedges S, Kumar S, editors Oxford: Oxford University Press
-
Benton M, Donoghue P, Asher R. 2009. Calibrating and constraining molecular clocks. In Hedges S, Kumar S, editors. The timetree of life. Oxford: Oxford University Press. p. 35-86.
-
(2009)
The Timetree of Life
, pp. 35-86
-
-
Benton, M.1
Donoghue, P.2
Asher, R.3
-
2
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
DOI 10.1093/molbev/msl150
-
Benton MJ, Donoghue PC. 2007. Paleontological evidence to date the tree of life. Mol Biol Evol. 24:26-53. (Pubitemid 46026279)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.1
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
4
-
-
77954967444
-
Bayesian estimation of divergence times from large sequence alignments
-
Guindon S. 2010. Bayesian estimation of divergence times from large sequence alignments. Mol Biol Evol. 27:1768-1781.
-
(2010)
Mol Biol Evol.
, vol.27
, pp. 1768-1781
-
-
Guindon, S.1
-
5
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
DOI 10.1007/BF02101694
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174. (Pubitemid 16227864)
-
(1985)
Journal of Molecular Evolution
, vol.22
, Issue.2
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
6
-
-
72049121650
-
The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times
-
Inoue J, Donoghue PC, Yang Z. 2010. The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times. Syst Biol. 59:74-89.
-
(2010)
Syst Biol.
, vol.59
, pp. 74-89
-
-
Inoue, J.1
Donoghue, P.C.2
Yang, Z.3
-
7
-
-
30344438542
-
The late miocene radiation of modern felidae: A genetic assesstment
-
DOI 10.1126/science.1122277
-
Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ. 2006. The late Miocene radiation of modern Felidae: a genetic assessment. Science 311:73-77. (Pubitemid 43063060)
-
(2006)
Science
, vol.311
, Issue.5757
, pp. 73-77
-
-
Johnson, W.E.1
Eizirik, E.2
Pecon-Slattery, J.3
Murphy, W.J.4
Antunes, A.5
Teeling, E.6
O'Brien, S.J.7
-
8
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN, editor New York Academic Press.
-
Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In Munro HN, editor. Mammalian protein metabolism. New York: Academic Press. p. 21-123.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
9
-
-
22944437097
-
Molecular clocks: Four decades of evolution
-
DOI 10.1038/nrg1659
-
Kumar S. 2005. Molecular clocks: four decades of evolution. Nat Rev Genet. 6:654-662. (Pubitemid 41044303)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.8
, pp. 654-662
-
-
Kumar, S.1
-
10
-
-
0035998180
-
Efficiency of covariance matrix estimators for maximum likelihood estimation
-
Porter J. 2002. Efficiency of covariance matrix estimators for maximum likelihood estimation. J Bus Econ Stat. 20:431-440.
-
(2002)
J Bus Econ Stat
, vol.20
, pp. 431-440
-
-
Porter, J.1
-
11
-
-
34249807028
-
A nonflowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial, and nuclear genes
-
DOI 10.1086/513474
-
Qiu YQ, Li L, Wang B, et al. (13 co-authors) 2007. A non-flowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial, and nuclear genes. Int J Plant Sci. 168:691-708. (Pubitemid 46849388)
-
(2007)
International Journal of Plant Sciences
, vol.168
, Issue.5
, pp. 691-708
-
-
Qiu, Y.-L.1
Li, B.2
Wang, B.3
Chen, Z.4
Dombrovska, O.5
Lee, J.6
Kent, L.7
Li, R.8
Jobson, R.W.9
Hendry, T.A.10
Taylor, D.W.11
Testa, C.M.12
Ambrost, M.13
-
12
-
-
34548556039
-
Inferring speciation times under an episodic molecular clock
-
Rannala B, Yang Z. 2007. Inferring speciation times under an episodic molecular clock. Syst Biol. 56:453-466.
-
(2007)
Syst Biol
, vol.56
, pp. 453-466
-
-
Rannala, B.1
Yang, Z.2
-
13
-
-
3042548848
-
Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences
-
DOI 10.1093/molbev/msh088
-
Seo TK, Kishino H, Thorne JL. 2004. Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences. Mol Biol Evol. 21:1201-1213. (Pubitemid 38823723)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.7
, pp. 1201-1213
-
-
Seo, T.-K.1
Kishino, H.2
Thorne, J.L.3
-
14
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne JL, Kishino H, Painter IS. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol Biol Evol. 15:1647-1657. (Pubitemid 28550989)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.12
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
15
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol. 39:306-314. (Pubitemid 24283346)
-
(1994)
Journal of Molecular Evolution
, vol.39
, Issue.3
, pp. 306-314
-
-
Yang, Z.1
-
16
-
-
0033692959
-
Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A
-
Yang Z. 2000. Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. J Mol Evol. 51:423-432.
-
(2000)
J Mol Evol
, vol.51
, pp. 423-432
-
-
Yang, Z.1
-
18
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
19
-
-
28944451210
-
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
-
DOI 10.1093/molbev/msj024
-
Yang Z, Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol Biol Evol. 23:212-226. (Pubitemid 41785968)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.1
, pp. 212-226
-
-
Yang, Z.1
Rannala, B.2
-
20
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
Bryson V, Vogel HJ, editors New York Academic Press
-
Zuckerkandl E, Pauling L. 1965. Evolutionary divergence and convergence in proteins. In Bryson V, Vogel HJ, editors. Evolving genes and proteins. New York: Academic Press. p. 97-166.
-
(1965)
Evolving Genes and Proteins
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
|