-
1
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
Balzsi G, van Oudenaarden A, Collins JJ (2011) Cellular decision making and biological noise: from microbes to mammals. Cell 144: 910-925.
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balzsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
2
-
-
79960630264
-
Central dogma at the single-molecule level in living cells
-
Li GW, Xie XS (2011) Central dogma at the single-molecule level in living cells. Nature 475: 308-315.
-
(2011)
Nature
, vol.475
, pp. 308-315
-
-
Li, G.W.1
Xie, X.S.2
-
3
-
-
78951470515
-
Origins of regulated cell-to-cell variability
-
Snijder B, Pelkmans L (2011) Origins of regulated cell-to-cell variability. Nat Rev Mol Cell Biol 12: 119-125.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 119-125
-
-
Snijder, B.1
Pelkmans, L.2
-
4
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186. (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
5
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A (2002) Regulation of noise in the expression of a single gene. Nat Genet 31: 69-73.
-
(2002)
Nat Genet
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
6
-
-
67650319009
-
Single-molecule approaches to stochastic gene expression
-
Raj A, van Oudenaarden A (2009) Single-molecule approaches to stochastic gene expression. Annu Rev Biophys 38: 255-270.
-
(2009)
Annu Rev Biophys
, vol.38
, pp. 255-270
-
-
Raj, A.1
Van Oudenaarden, A.2
-
7
-
-
48249095613
-
Single-molecule approach to molecular biology in living bacterial cells
-
Xie XS, Choi PJ, Li GW, Lee NK, Lia G (2008) Single-molecule approach to molecular biology in living bacterial cells. Annu Rev Biophys 37: 417-44.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 417-444
-
-
Xie, X.S.1
Choi, P.J.2
Li, G.W.3
Lee, N.K.4
Lia, G.5
-
8
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
DOI 10.1016/j.cell.2005.09.031, PII S0092867405010378
-
Golding I, Paulsson J, Zawilski SM, Cox EC (2005) Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-36. (Pubitemid 41785418)
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
9
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N, Xie XS (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-62.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
10
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu J, Xiao J, Ren X, Lao K, Xie XS (2006) Probing gene expression in live cells, one protein molecule at a time. Science (New York, NY) 311: 1600-3.
-
(2006)
Science (New York, NY)
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
11
-
-
33750247101
-
Linking stochastic dynamics to population distribution: An analytical framework of gene expression
-
Friedman N, Cai L, Xie X (2006) Linking stochastic dynamics to population distribution: An analytical framework of gene expression. Phys Rev Lett 97: 168302.
-
(2006)
Phys Rev Lett
, vol.97
, pp. 168302
-
-
Friedman, N.1
Cai, L.2
Xie, X.3
-
12
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
Choi PJ, Cai L, Frieda K, Xie XS (2008) A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science (New York, NY) 322: 442-6.
-
(2008)
Science (New York, NY)
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
13
-
-
0001389945
-
Enzyme induction as an all-or-none phenomenon
-
Novick A, Weiner M (1957) Enzyme induction as an all-or-none phenomenon. Proc Nat Acad Sci USA 43: 553-566.
-
(1957)
Proc Nat Acad Sci USA
, vol.43
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
14
-
-
84876242563
-
DNA looping increases the range of bistability in a stochastic model of the lac genetic switch
-
Earnest TM, Roberts E, Assaf M, Dahmen K, Luthey-Schulten Z (2013) DNA looping increases the range of bistability in a stochastic model of the lac genetic switch. Phys Biol 10: 026002.
-
(2013)
Phys Biol
, vol.10
, pp. 026002
-
-
Earnest, T.M.1
Roberts, E.2
Assaf, M.3
Dahmen, K.4
Luthey-Schulten, Z.5
-
15
-
-
0042622638
-
DNA looping and physical constraints on transcription regulation
-
DOI 10.1016/S0022-2836(03)00764-2
-
Vilar JMG, Leibler S (2003) DNA looping and physical constraints on transcription regulation. J Mol Biol 331: 981-989. (Pubitemid 36969959)
-
(2003)
Journal of Molecular Biology
, vol.331
, Issue.5
, pp. 981-989
-
-
Vilar, J.M.G.1
Leibler, S.2
-
16
-
-
61549095805
-
Comparison of deterministic and stochastic models of the lac operon genetic network
-
Stamatakis M, Mantzaris NV (2009) Comparison of deterministic and stochastic models of the lac operon genetic network. Biophys J 96: 887-906.
-
(2009)
Biophys J
, vol.96
, pp. 887-906
-
-
Stamatakis, M.1
Mantzaris, N.V.2
-
17
-
-
0017833657
-
A model for the statistical fluctuations of protein numbers in a microbial population
-
Berg OG (1978) A model for the statistical fluctuations of protein numbers in a microbial population. J Theor Biol 71: 587-603.
-
(1978)
J Theor Biol
, vol.71
, pp. 587-603
-
-
Berg, O.G.1
-
18
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
Kepler TB, Elston TC (2001) Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys J 81: 3116-36. (Pubitemid 33111463)
-
(2001)
Biophysical Journal
, vol.81
, Issue.6
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
19
-
-
0000111447
-
Markovian modeling of gene product synthesis
-
Peccoud J, Ycart B (1995) Markovian modeling of gene product synthesis. Theor Popul Biol 48: 222-234.
-
(1995)
Theor Popul Biol
, vol.48
, pp. 222-234
-
-
Peccoud, J.1
Ycart, B.2
-
20
-
-
0018373583
-
Stochastic model of constitutive protein levels in growing and dividing bacterial cells
-
Rigney DR (1979) Stochastic model of constitutive protein levels in growing and dividing bacterial cells. J Theor Biol 76: 453-80.
-
(1979)
J Theor Biol
, vol.76
, pp. 453-480
-
-
Rigney, D.R.1
-
21
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4: e309.
-
(2006)
PLoS Biol
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
22
-
-
56249130793
-
Analytical distributions for stochastic gene expression
-
Shahrezaei V, Swain PS (2008) Analytical distributions for stochastic gene expression. Proc Natl Acad Sci U S A 105: 17256-61.
-
(2008)
Proc Natl Acad Sci U S a
, vol.105
, pp. 17256-17261
-
-
Shahrezaei, V.1
Swain, P.S.2
-
23
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain PS, Elowitz MB, Siggia ED (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci U S A 99: 12795-800.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
25
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler S, Eismann ER, Krmer H, Mller-Hill B (1990) The three operators of the lac operon cooperate in repression. EMBO J 9: 973-979.
-
(1990)
EMBO J
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Krmer, H.3
Mller-Hill, B.4
-
26
-
-
0028365289
-
Quality and position of the three lac operators of E.coli define efficiency of repression
-
Oehler S, Amouyal M, Kolkhof P, von Wilcken-Bergmann B, Mller-Hill B (1994) Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J 13: 3348-3355. (Pubitemid 24226950)
-
(1994)
EMBO Journal
, vol.13
, Issue.14
, pp. 3348-3355
-
-
Oehler, S.1
Amouyal, M.2
Kolkhof, P.3
Von Wilcken-Bergmann, B.4
Muller-Hill, B.5
-
28
-
-
84862624197
-
The Lac repressor displays facilitated diffusion in living cells
-
Hammar P, Leroy P, Mahmutovic A, Marklund EG, Berg OG, et al. (2012) The Lac repressor displays facilitated diffusion in living cells. Science (New York, NY) 336: 1595-8.
-
(2012)
Science (New York, NY)
, vol.336
, pp. 1595-1598
-
-
Hammar, P.1
Leroy, P.2
Mahmutovic, A.3
Marklund, E.G.4
Berg, O.G.5
-
31
-
-
0016745534
-
Interaction of effecting ligands with lac repressor and repressor-operator complex
-
Barkley MD, Riggs AD, Jobe A, Bourgeois S (1975) Interaction of effecting ligands with lac repressor and repressor-operator complex. Biochemistry 14: 1700-1712.
-
(1975)
Biochemistry
, vol.14
, pp. 1700-1712
-
-
Barkley, M.D.1
Riggs, A.D.2
Jobe, A.3
Bourgeois, S.4
-
32
-
-
0019321794
-
Kinetic studies of inducer binding to lac repressor operator complex
-
Dunaway M, Olson JS, Rosenberg JM, Kallai OB, Dickerson RE, et al. (1980) Kinetic studies of inducer binding to lac repressor operator complex. J Biol Chem 255: 10115-10119.
-
(1980)
J Biol Chem
, vol.255
, pp. 10115-10119
-
-
Dunaway, M.1
Olson, J.S.2
Rosenberg, J.M.3
Kallai, O.B.4
Dickerson, R.E.5
-
33
-
-
4644266081
-
Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
-
Cao Y, Li H, Petzold L (2004) Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. J Chem Phys 121: 4059-4067.
-
(2004)
J Chem Phys
, vol.121
, pp. 4059-4067
-
-
Cao, Y.1
Li, H.2
Petzold, L.3
-
34
-
-
80051950768
-
StochKit2: Software for discrete stochastic simulation of biochemical systems with events
-
Sanft KR, Wu S, Roh M, Fu J, Lim RK, et al. (2011) StochKit2: software for discrete stochastic simulation of biochemical systems with events. Bioinformatics (Oxford, England) 27: 2457-8.
-
(2011)
Bioinformatics (Oxford, England)
, vol.27
, pp. 2457-2458
-
-
Sanft, K.R.1
Wu, S.2
Roh, M.3
Fu, J.4
Lim, R.K.5
-
35
-
-
32644439362
-
Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction
-
DOI 10.1093/nar/gkj453
-
Oehler S, Alberti S, Mller-Hill B (2006) Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction. Nucleic Acids Res 34: 606-612. (Pubitemid 43240248)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.2
, pp. 606-612
-
-
Oehler, S.1
Alberti, S.2
Muller-Hill, B.3
|