Pisum sativum p68 DEAD-box protein is ATP-dependent RNA helicase and unique bipolar DNA helicase

Plant Molecular Biology

Volumn 85, Issue 6, 2014, Pages 639-651

  Tuteja, Narendra ^a   Tarique, Mohammed ^a   Banu, Mst Sufara Akhter ^a   Ahmad, Moaz ^a   Tuteja, Renu ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

Author keywords

Bipolar unwinding; DEAD box proteins; Dual helicase; p68; Pisum sativum; RNA and DNA binding

Indexed keywords

ANIMALIA; PISUM SATIVUM;

DEAD BOX PROTEIN; DNA HELICASE; RECOMBINANT PROTEIN; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PEA; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; DEAD-BOX RNA HELICASES; DNA HELICASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEAS; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT;

EID: 84904552235     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-014-0209-6     Document Type: Article

References (48)

1. Ahmad M, Tuteja R (2013) Plasmodium falciparum RuvB2 translocates in 5′-3′ direction, relocalizes during schizont stage and its enzymatic activities are up regulated by RuvB3 of the same complex. Biochim Biophys Acta 1834: 2795-2811.
2. Ahmad M, Ansari A, Tarique M, Satsangi AT, Tuteja R (2012) Plasmodium falciparum UvrD helicase translocates in 3′ to 5′ direction, colocalizes with MLH and modulates its activity through physical interaction. PLoS One 7: e49385.
3. Anand SP, Khan SA (2004) Structure-specific DNA binding and bipolar helicase activities of PcrA. Nucleic Acids Res 32: 3190-3197.
4. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
5. 2 and interacts with argonaute. Plant Mol Biol Rep. doi: 10. 1007/s11105-014-0748-7.
6. Banu MSA, Huda KMK, Tuteja N (2014b) Isolation and functional characterization of the promoter of a DEAD-box helicase Psp68 using Agrobacterium-mediated transient assay. Plant Signal Behav 9: e28992.
7. Bates GJ, Nicol SM, Wilson BJ, Jacobs AM, Bourdon JC, Wardrop J, Gregory DJ, Lane DP, Perkins ND, Fuller-Pace FV (2005) The DEAD box protein p68: a novel transcriptional coactivator of the p53 tumour suppressor. EMBO J 24: 543-553.
8. Buszczak M, Spradling AC (2006) The Drosophila P68 RNA helicase regulates transcriptional deactivation by promoting RNA release from chromatin. Genes Dev 20: 977-989.
9. Cheng Z, Coller J, Parker R, Song H (2005) Crystal structure and functional analysis of DEAD-box protein Dhh1p. RNA 11: 1258-1270.
10. Constantinesco F, Forterre P, Koonin EV, Aravind L, Elie CA (2004) Bipolar DNA helicase gene, herA, clusters with rad50, mre11 and nurA genes in thermophilic archaea. Nucleic Acids Res 32: 1439-1447.
11. Cordin O, Banroques J, Tanner NK, Linder P (2006) The DEAD-box protein family of RNA helicases. Gene 367: 17-37.
12. Endoh H, Maruyama K, Masuhiro Y, Kobayashi Y, Goto M, Tai H, Yanagisawa J, Metzger D, Hashimoto S, Kato S (1999) Purification and identification of p68 RNA helicase acting as a transcriptional coactivator specific for the activation function 1 of human estrogen receptor alpha. Mol Cell Biol 19: 5363-5372.
13. Fuller-Pace FV (2006) DExD/H box RNA helicases multifunctional proteins with important roles in transcriptional regulation. Nucleic Acids Res 34: 4206-4215.
14. Fuller-Pace FV (2013) The DEAD box proteins DDX5 (p68) and DDX17 (p72): multi-tasking transcriptional regulators. Biochim Biophys Acta 1829: 756-763.
15. Gendra E, Moreno A, Alba MM, Pages M (2004) Interaction of the plant glycine-rich RNA-binding protein MA16 with a novel nucleolar DEAD box RNA helicase protein from Zea mays. Plant J 38: 875-886.
16. Gong Z, Dong CH, Lee H, Zhu J, Xiong L, Gong D, Stevenson B, Zhu JK (2005) A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17: 256-267.
17. Guan Q, Wu J, Zhang Y, Jiang C, Liu R, Chai C, Zhu J (2013) A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis. Plant Cell 25: 342-356.
18. Hogbom M, Collins R, van den Berg S, Jenvert RM, Karlberg T, Kotenyova T, Flores A, Karlsson Hedestam GB, Schiavone LH (2007) Crystal structure of conserved domains 1 and 2 of the human DEAD-box helicase DDX3X in complex with the mononucleotide AMP. J Mol Biol 372: 150-159.
19. Huang Y, Liu ZR (2002) The ATPase, RNA unwinding, and RNA binding activities of recombinant p68 RNA helicase. J Biol Chem 277: 12810-12815.
20. Iggo RD, Lane DP (1989) Nuclear protein p68 is an RNA-dependent ATPase. EMBO J 8: 1827.
21. Itadani H, Sugita M, Sugiura M (1994) Structure and expression of a cDNA encoding an RNA helicase-like protein in tobacco. Plant Mol Biol 24: 249-252.
22. Jones PG, Mitta M, Kim Y, Jiang W, Inouye M (1996) Cold shock induces a major ribosomal-associated protein that unwinds double stranded RNA in Escherichia coli. Proc Natl Acad Sci USA 93: 76-80.
23. Kammel C, Thomaier M, Sorensen BB, Schubert T, Langst G, Grasser M, Grasser KD (2013) Arabidopsis DEAD-box RNA helicase UAP56 interacts with both RNA and DNA as well as with mRNA export factors. PLoS One 8: e60644.
24. Linder P, Jankowsky E (2011) From unwinding to clamping-the DEAD box RNA helicase family. Nat Rev Mol Cell Biol 12: 505-516.
25. Mehta J, Tuteja R (2011) A novel dual Dbp5/DDX19 homologue from Plasmodium falciparum requires Q motif for activity. Mol Biochem Parasitol 176: 58-63.
26. Okanami M, Meshi T, Iwabuchi M (1998) Characterization of a DEAD box ATPase/RNA helicase protein of Arabidopsis thaliana. Nucleic Acids Res 26: 2638-2643.
27. Owttrim GW (2006) RNA helicases and abiotic stress. Nucleic Acids Res 34: 3220-3230.
28. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612.
29. Pradhan A, Tuteja R (2007) Bipolar, dual Plasmodium falciparum helicase 45 expressed in the intraerythrocytic developmental cycle is required for parasite growth. J Mol Biol 373: 268-281.
30. Pradhan A, Chauhan VS, Tuteja R (2005a) A novel 'DEAD-box' DNA helicase from Plasmodium falciparum is homologous to p68. Mol Biochem Parasitol 140: 55-60.
31. Pradhan A, Chauhan VS, Tuteja R (2005b) Plasmodium falciparum DNA helicase 60 is a schizont stage specific, bipolar and dual helicase stimulated by PKC phosphorylation. Mol Biochem Parasitol 144: 133-141.
32. Rossow KL, Janknecht R (2003) Synergism between p68 RNA helicase and the transcriptional coactivators CBP and p300. Oncogene 22: 151-156.
33. Shankar J, Pradhan A, Tuteja R (2008) Isolation and characterization of Plasmodium falciparum UAP56 homolog evidence for the coupling of RNA binding and splicing activity by site-directed mutations. Arch Biochem Biophys 478: 143-153.
34. Stevenson RJ, Hamilton SJ, MacCallum DE, Hall PA, Fuller-Pace FV (1998) Expression of the 'dead box' RNA helicase p68 is developmentally and growth regulated and correlates with organ differentiation/maturation in the fetus. J Pathol 184: 351-359.
35. Tarique M, Ahmad M, Ansari A, Tuteja R (2013) Plasmodium falciparum DOZI, an RNA helicase interacts with eIF4E. Gene 522: 46-59.
36. Tuteja N (2003) Plant DNA helicases: the long unwinding road. J Exp Bot 54: 2201-2214.
37. Tuteja R, Pradhan A (2006) Unraveling the 'DEAD-box' helicases of Plasmodium falciparum. Gene 376: 1-12.
38. Tuteja N, Tuteja R (2004a) Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery. Eur J Biochem 271: 1835-1848.
39. Tuteja N, Tuteja R (2004b) Unraveling DNA helicases. Motif, structure, mechanism and function. Eur J Biochem 271: 1849-1863.
40. Tuteja N, Sahoo RK, Garg B, Tuteja N (2013) OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64). Plant J 76: 115-127. doi: 10. 1111/tpj. 12277.
41. Tuteja N, Banu MSA, Huda KMK, Gill SS, Jain P, Pham XH, Tuteja R (2014) Pea p68, a DEAD-box helicase, provides salinity stress tolerance in transgenic tobacco by reducing oxidative stress and improving photosynthesis machinery. PLOS One 9(5): e98287. doi: 10. 1371/journal. pone. 0098287.
42. Vashisht AA, Tuteja N (2006) Stress responsive DEAD-box helicases: a new pathway to engineer plant stress tolerance. J Photochem Photobiol B 84: 150-160.
43. Vashisht AA, Pradhan A, Tuteja R, Tuteja N (2005) Cold- and salinity stress-induced bipolar pea DNA helicase 47 is involved in protein synthesis and stimulated by phosphorylation with protein kinase C. Plant J 44: 76-87.
44. Wang H, Gao X, Huang Y, Yang J, Liu ZR (2009) P68 RNA helicase is a nucleocytoplasmic shuttling protein. Cell Res 19: 1388-1400.
45. Wang H, Gao X, Yang JJ, Liu ZR (2013) Interaction between p68 RNA helicase and Ca2+-calmodulin promotes cell migration and metastasis. Nat Commun 4: 1354.
46. Wilson BJ, Bates GJ, Nicol SM, Gregory DJ, Perkins ND, Fuller-Pace FV (2004) The p68 and p72 DEAD box RNA helicases interact with HDAC1 and repress transcription in a promoter-specific manner. BMC Mol Biol 5: 11. doi: 10. 1186/1471-2199-5-11.
47. Yang T, Poovaiah BW (2003) Calcium/calmodulin-mediated signal network in plants. Trends Plant Sci 8: 505-512.
48. Yang L, Lin C, Liu ZR (2005) Signaling to the DEAD box-regulation of DEAD-box p68 RNA helicase by protein phosphorylations. Cell Signal 17: 1495-1504.