-
1
-
-
0032567041
-
The many interfaces of Mre11
-
Haber,J.E. (1998) The many interfaces of Mre11 Cell, 95, 583-586.
-
(1998)
Cell
, vol.95
, pp. 583-586
-
-
Haber, J.E.1
-
2
-
-
0030089480
-
The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination
-
Connelly,J.C. and Leach,D.R. (1996) The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination. Genes Cells, 1, 285-291.
-
(1996)
Genes Cells
, vol.1
, pp. 285-291
-
-
Connelly, J.C.1
Leach, D.R.2
-
3
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
Aravind,L., Walker,D.R. and Koonin,E.V. (1999) Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res., 27, 1223-1242.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1223-1242
-
-
Aravind, L.1
Walker, D.R.2
Koonin, E.V.3
-
4
-
-
0038202108
-
Archaeal DNA repair: Paradigms and puzzles
-
White,M.F. (2003) Archaeal DNA repair: paradigms and puzzles. Biochem. Soc. Trans., 31, 690-693.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 690-693
-
-
White, M.F.1
-
5
-
-
0034790896
-
DNA recombination and repair in the archaea
-
Seitz,E.M., Haseltine,C.A. and Kowalczykowski,S.C. (2001) DNA recombination and repair in the archaea. Adv. Appl. Microbiol., 50, 101-169.
-
(2001)
Adv. Appl. Microbiol.
, vol.50
, pp. 101-169
-
-
Seitz, E.M.1
Haseltine, C.A.2
Kowalczykowski, S.C.3
-
6
-
-
0034176335
-
Initiation of genetic recombination and recombination-dependent replication
-
Kowalczykowski,S.C. (2000) Initiation of genetic recombination and recombination-dependent replication. Trends Biochem. Sci., 25, 156-165.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 156-165
-
-
Kowalczykowski, S.C.1
-
7
-
-
0032476658
-
Distinct roles of two separable in vitro activities of yeast Mre11 in mitotic and meiotic recombination
-
Furuse,M., Nagase,Y., Tsubouchi,H., Murakami-Murofushi,K., Shibata,T. and Ohta,K. (1998) Distinct roles of two separable in vitro activities of yeast Mre11 in mitotic and meiotic recombination. EMBO J., 17, 6412-6425.
-
(1998)
EMBO J.
, vol.17
, pp. 6412-6425
-
-
Furuse, M.1
Nagase, Y.2
Tsubouchi, H.3
Murakami-Murofushi, K.4
Shibata, T.5
Ohta, K.6
-
8
-
-
0032567108
-
Complex formation and functional versatility of Mre11 of budding yeast in recombination
-
Usui,T., Ohta,T., Oshiumi,H., Tomizawa,J., Ogawa,H. and Ogawa,T. (1998) Complex formation and functional versatility of Mre11 of budding yeast in recombination. Cell, 95, 705-716.
-
(1998)
Cell
, vol.95
, pp. 705-716
-
-
Usui, T.1
Ohta, T.2
Oshiumi, H.3
Tomizawa, J.4
Ogawa, H.5
Ogawa, T.6
-
9
-
-
0032555480
-
Nuclease activities in a complex of human recombination and DNA repair factors Rad50, Mre11 and p95
-
Trujillo,K.M., Yuan,S.S., Lee,E.Y. and Sung,P. (1998) Nuclease activities in a complex of human recombination and DNA repair factors Rad50, Mre11 and p95. J. Biol. Chem., 273, 21447-21450.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21447-21450
-
-
Trujillo, K.M.1
Yuan, S.S.2
Lee, E.Y.3
Sung, P.4
-
10
-
-
0033759543
-
Mre11 and Rad50 from Pyrococcus furiosus: Cloning and biochemical characterization reveal an evolutionarily conserved multiprotein machine
-
Hopfner,K.P., Karcher,A., Shin,D., Fairley,C., Tainer,J.A., Carney,J.P. (2000) Mre11 and Rad50 from Pyrococcus furiosus: cloning and biochemical characterization reveal an evolutionarily conserved multiprotein machine. J. Bacteriol., 182, 6036-6041.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6036-6041
-
-
Hopfner, K.P.1
Karcher, A.2
Shin, D.3
Fairley, C.4
Tainer, J.A.5
Carney, J.P.6
-
11
-
-
0028857690
-
Structural functional similarities between the SbcCD proteins of Escherichia coli the RAD50 MRE11 (RAD32) recombination repair proteins of yeast
-
Sharples,G.J. and Leach,D.R. (1995) Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast. Mol. Microbiol., 17, 1215-1217.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 1215-1217
-
-
Sharples, G.J.1
Leach, D.R.2
-
12
-
-
0036469066
-
DNA double-strand break repair from head to tail
-
Hopfner,K.P., Putnam,C.D. and Tainer,J.A. (2002) DNA double-strand break repair from head to tail. Curr. Opin. Struct. Biol., 12, 115-122.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 115-122
-
-
Hopfner, K.P.1
Putnam, C.D.2
Tainer, J.A.3
-
13
-
-
0038610906
-
The coiled-coil of the human Rad50 DNA repair protein contains specific segments of increased flexibility
-
van Noort,J., van Der Heijden,T., de Jager,M., Wyman,C., Kanaar,R. and Dekker,C. (2003) The coiled-coil of the human Rad50 DNA repair protein contains specific segments of increased flexibility. Proc. Natl Acad. Sci. USA, 100, 7581-7586.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7581-7586
-
-
van Noort, J.1
van Der Heijden, T.2
de Jager, M.3
Wyman, C.4
Kanaar, R.5
Dekker, C.6
-
14
-
-
0033563229
-
Nbs1 potentiates ATP-driven DNA unwinding endonuclease cleavage by the Mre11/Rad50 complex
-
Paull,T.T. and Gellert,M. (1999) Nbs1 potentiates ATP-driven DNA unwinding and endonuclease cleavage by the Mre11/Rad50 complex. Genes Dev., 13, 1276-1288.
-
(1999)
Genes Dev.
, vol.13
, pp. 1276-1288
-
-
Paull, T.T.1
Gellert, M.2
-
15
-
-
0036305477
-
NurA, a novel 5′-3′ nuclease gene linked to rad50 and mre11 homologs of thermophilic Archaea
-
Constantinesco,F., Forterre,P. and Elie,C. (2002) NurA, a novel 5′-3′ nuclease gene linked to rad50 and mre11 homologs of thermophilic Archaea. EMBO Rep., 3, 537-542.
-
(2002)
EMBO Rep.
, vol.3
, pp. 537-542
-
-
Constantinesco, F.1
Forterre, P.2
Elie, C.3
-
16
-
-
0030801002
-
Gapped BLAST PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
17
-
-
0034623005
-
T-Coffee: A novel method for fast accurate multiple sequence alignment
-
Notredame,C., Higgins,D.G. and Heringa,J. (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol., 302, 205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
18
-
-
0032815173
-
Control of DNA topology during thermal stress in hyperthermophilic archaea: DNA topoisomerase levels, activities and induced thermotolerance during heat and cold shock in Sulfolobus
-
Lopez-Garcia,P. and Forterre,P. (1999) Control of DNA topology during thermal stress in hyperthermophilic archaea: DNA topoisomerase levels, activities and induced thermotolerance during heat and cold shock in Sulfolobus. Mol. Microbiol., 33, 766-777.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 766-777
-
-
Lopez-Garcia, P.1
Forterre, P.2
-
19
-
-
0032529265
-
The tRNA(guamne-26,N2-N2) methyltransferase (Trm1) from the hyperthermophilic archaeon Pyrococcus furiosus: Cloning, sequencing of the gene and its expression in Escherichia coli
-
Constantinesco,F., Benachenhou,N., Motorin,Y. and Grosjean,H. (1998) The tRNA(guamne-26,N2-N2) methyltransferase (Trm1) from the hyperthermophilic archaeon Pyrococcus furiosus: cloning, sequencing of the gene and its expression in Escherichia coli. Nucleic Acids Res., 26, 3753-3761.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3753-3761
-
-
Constantinesco, F.1
Benachenhou, N.2
Motorin, Y.3
Grosjean, H.4
-
20
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker,J.E., Saraste,M., Runswick,M.J. and Gay,N.J. (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J., 1, 945-951.
-
(1982)
EMBO J.
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
21
-
-
0025048136
-
The P-loop - A common motif in ATP- and GTP-binding proteins
-
Saraste,M., Sibbald,P.R. and Wittinghofer,A. (1990) The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci., 15, 430-434.
-
(1990)
Trends Biochem. Sci.
, vol.15
, pp. 430-434
-
-
Saraste, M.1
Sibbald, P.R.2
Wittinghofer, A.3
-
22
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov,R.L., Natale,D.A., Garkavtsev,I.V., Tatusova,T.A., Shankavaram,U.T., Rao,B.S., Kiryutin,B., Galperin,M.Y., Fedorova,N.D. and Koonin,E.V. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 29, 22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
23
-
-
0037698985
-
RecBCD enzyme is a DNA helicase with fast slow motors of opposite polarity
-
Taylor,A.F. and Smith,G.R. (2003) RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity. Nature, 423, 889-893.
-
(2003)
Nature
, vol.423
, pp. 889-893
-
-
Taylor, A.F.1
Smith, G.R.2
-
24
-
-
0142011067
-
Evolution and classification of P-loop kinases and related proteins
-
Leipe,D.D., Koonin,E.V. and Aravind,L. (2003) Evolution and classification of P-loop kinases and related proteins. J. Mol. Biol., 333, 781-815.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 781-815
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
25
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes
-
Neuwald,A.F., Aravind,L., Spouge,J.L. and Koonin,E.V. (1999) AAA+: A class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes. Genome Res., 9, 27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
26
-
-
0033081408
-
The hexamerization domain of N-ethylmaleimide-sensitive factor: Structural clues to chaperone function
-
Neuwald,A.F. (1999) The hexamerization domain of N-ethylmaleimide-sensitive factor: structural clues to chaperone function. Structure Fold. Des., 7, R19-R23.
-
(1999)
Structure Fold. Des.
, vol.7
-
-
Neuwald, A.F.1
-
27
-
-
0035839032
-
Structure and mechanism of the RuvB Holliday junction branch migration motor
-
Putnam,C.D., Clancy,S.B., Tsuruta,H., Gonzalez,S., Wetmur,J.G. and Tainer,J.A. (2001) Structure and mechanism of the RuvB Holliday junction branch migration motor. J. Mol. Biol., 311, 297-310.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 297-310
-
-
Putnam, C.D.1
Clancy, S.B.2
Tsuruta, H.3
Gonzalez, S.4
Wetmur, J.G.5
Tainer, J.A.6
-
28
-
-
0041630781
-
Crystal structure of the SF3 helicase from adeno-associated virus type 2
-
James,J.A., Escalante,C.R., Yoon-Robarts,M., Edwards,T.A., Linden,R.M., Aggarwal,A.K. (2003) Crystal structure of the SF3 helicase from adeno-associated virus type 2. Structure (Camb.), 11, 1025-1035.
-
(2003)
Structure (Camb.)
, vol.11
, pp. 1025-1035
-
-
James, J.A.1
Escalante, C.R.2
Yoon-Robarts, M.3
Edwards, T.A.4
Linden, R.M.5
Aggarwal, A.K.6
-
29
-
-
0033566657
-
Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation
-
Dillingham,M.S., Soultanas,P. and Wigley,D.B. (1999) Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation. Nucleic Acids Res., 27, 3310-3317.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3310-3317
-
-
Dillingham, M.S.1
Soultanas, P.2
Wigley, D.B.3
-
30
-
-
0032763657
-
Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase
-
Johnson,E.R. and McKay,D.B. (1999) Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase. RNA, 5, 1526-1534.
-
(1999)
RNA
, vol.5
, pp. 1526-1534
-
-
Johnson, E.R.1
McKay, D.B.2
-
31
-
-
2442483942
-
Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation
-
Cabezon,E., Sastre,J.I. and de la Cruz,F. (1997) Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation. Mol. Gen. Genet., 254, 400-406.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 400-406
-
-
Cabezon, E.1
Sastre, J.I.2
de la Cruz, F.3
-
32
-
-
0034053027
-
TraG from RP4 and TraG and VirD4 from Ti plasmids confer relaxosome specificity to the conjugal transfer system of pTiC58
-
Hamilton,C.M., Lee,H., Li,P.L., Cook,D.M., Piper,K.R., von Bodman,S.B., Lanka,E., Ream,W. and Farrand,S.K. (2000) TraG from RP4 and TraG and VirD4 from Ti plasmids confer relaxosome specificity to the conjugal transfer system of pTiC58. J. Bacteriol., 182, 1541-1548.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1541-1548
-
-
Hamilton, C.M.1
Lee, H.2
Li, P.L.3
Cook, D.M.4
Piper, K.R.5
von Bodman, S.B.6
Lanka, E.7
Ream, W.8
Farrand, S.K.9
-
33
-
-
0037169328
-
FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases
-
Aussel,L., Barre,F.X., Aroyo,M., Stasiak,A., Stasiak,A.Z. and Sherratt,D. (2002) FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases. Cell, 108, 195-205.
-
(2002)
Cell
, vol.108
, pp. 195-205
-
-
Aussel, L.1
Barre, F.X.2
Aroyo, M.3
Stasiak, A.4
Stasiak, A.Z.5
Sherratt, D.6
-
34
-
-
0347157844
-
Mcm4,6,7 uses a 'pump in ring' mechanism to unwind DNA by steric exclusion and actively translocate along a duplex
-
Kaplan,D.L., Davey,M.J. and O'Donnell,M. (2003) Mcm4,6,7 uses a 'pump in ring' mechanism to unwind DNA by steric exclusion and actively translocate along a duplex. J. Biol. Chem., 278, 49171-4182
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 49171-49182
-
-
Kaplan, D.L.1
Davey, M.J.2
O'Donnell, M.3
-
35
-
-
0029154926
-
RuvB protein-mediated ATP hydrolysis: Functional asymmetry in the RuvB hexamer
-
Marrione,P.E. and Cox,M.M (1995) RuvB protein-mediated ATP hydrolysis: functional asymmetry in the RuvB hexamer. Biochemistry, 34, 9809-9818.
-
(1995)
Biochemistry
, vol.34
, pp. 9809-9818
-
-
Marrione, P.E.1
Cox, M.M.2
-
36
-
-
0034686021
-
The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicum DH minichromosome maintenance protein
-
Shechter,D.F., Ying,C.Y. and Gautier,J. (2000) The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicum DH minichromosome maintenance protein. J. Biol. Chem., 275, 15049-15059
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 15049-15059
-
-
Shechter, D.F.1
Ying, C.Y.2
Gautier, J.3
-
37
-
-
0027182114
-
Helicase-amino acid sequence comparisons and structure-function relationships
-
Gorbalenya,A.E. and Koonin,E.V. (1993) Helicase-amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol., 3, 419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
38
-
-
0035252083
-
The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase
-
Gomis-Ruth,F.X., Moncalian,G., Perez-Luque,R., Gonzalez,A., Cabezon,E., de la Cruz,F. and Coll,M. (2001) The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature, 409, 637-641.
-
(2001)
Nature
, vol.409
, pp. 637-641
-
-
Gomis-Ruth, F.X.1
Moncalian, G.2
Perez-Luque, R.3
Gonzalez, A.4
Cabezon, E.5
de la Cruz, F.6
Coll, M.7
-
39
-
-
0033786801
-
Structure and function of hexameric helicases
-
Patel,S.S. and Picha,K.M. (2000) Structure and function of hexameric helicases. Annu Rev. Biochem., 69, 651-697.
-
(2000)
Annu Rev. Biochem.
, vol.69
, pp. 651-697
-
-
Patel, S.S.1
Picha, K.M.2
-
40
-
-
0016186413
-
The mechanism of degradation of duplex deoxyribonucleic acid by the recBC enzyme of Escherichia coli K-12
-
MacKay,V. and Linn,S. (1974) The mechanism of degradation of duplex deoxyribonucleic acid by the recBC enzyme of Escherichia coli K-12. J. Biol. Chem., 249, 4286-4294.
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 4286-4294
-
-
MacKay, V.1
Linn, S.2
-
41
-
-
0037590607
-
RecBCD enzyme is a bipolar DNA helicase
-
Dillingham,M.S., Spies,M. and Kowalczykowski,S.C. (2003) RecBCD enzyme is a bipolar DNA helicase. Nature, 423, 893-897.
-
(2003)
Nature
, vol.423
, pp. 893-897
-
-
Dillingham, M.S.1
Spies, M.2
Kowalczykowski, S.C.3
|