-
1
-
-
33846018056
-
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance
-
Agarwal, M., Hao, Y., Kapoor, A., Dong, C.H., Fujii, H., Zheng, X., and Zhu, J.-K. (2006). A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37636-37645
-
-
Agarwal, M.1
Hao, Y.2
Kapoor, A.3
Dong, C.H.4
Fujii, H.5
Zheng, X.6
Zhu, J.-K.7
-
2
-
-
67649711869
-
-
Tech Report #745. (Berkeley, CA: University of California)
-
Bengtsson, H., Simpson, K., Bullard, J., and Hansen, K. (2008). aroma. affymetrix: A Generic Framework in R for Analyzing Small to Very Large Affymetrix Data Sets in Bounded Memory. Tech Report #745. (Berkeley, CA: University of California).
-
(2008)
Aroma. affymetrix: A Generic Framework in R for Analyzing Small to Very Large Affymetrix Data Sets in Bounded Memory
-
-
Bengtsson, H.1
Simpson, K.2
Bullard, J.3
Hansen, K.4
-
3
-
-
0030248746
-
Mediator of transcriptional regulation
-
Björklund, S., and Kim, Y.J. (1996). Mediator of transcriptional regulation. Trends Biochem. Sci. 21: 335-337.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 335-337
-
-
Björklund, S.1
Kim, Y.J.2
-
4
-
-
4344571581
-
Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
-
Breitling, R., Armengaud, P., Amtmann, A., and Herzyk, P. (2004). Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett. 573: 83-92.
-
(2004)
FEBS Lett.
, vol.573
, pp. 83-92
-
-
Breitling, R.1
Armengaud, P.2
Amtmann, A.3
Herzyk, P.4
-
5
-
-
0037447146
-
ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis
-
Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B.H., Hong, X., Agarwal, M., and Zhu, J.-K. (2003). ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev. 17: 1043-1054.
-
(2003)
Genes Dev.
, vol.17
, pp. 1043-1054
-
-
Chinnusamy, V.1
Ohta, M.2
Kanrar, S.3
Lee, B.H.4
Hong, X.5
Agarwal, M.6
Zhu, J.-K.7
-
6
-
-
0033547333
-
The RNA splicing factor hSlu7 is required for correct 39 splice-site choice
-
Chua, K., and Reed, R. (1999). The RNA splicing factor hSlu7 is required for correct 39 splice-site choice. Nature 402: 207-210.
-
(1999)
Nature
, vol.402
, pp. 207-210
-
-
Chua, K.1
Reed, R.2
-
7
-
-
29544434154
-
The recessive epigenetic swellmap mutation affects the expression of two step II splicing factors required for the transcription of the cell proliferation gene STRUWWELPETER and for the timing of cell cycle arrest in the Arabidopsis leaf
-
1994-2008
-
Clay, N.K., and Nelson, T. (2005). The recessive epigenetic swellmap mutation affects the expression of two step II splicing factors required for the transcription of the cell proliferation gene STRUWWELPETER and for the timing of cell cycle arrest in the Arabidopsis leaf. Plant Cell 17: 1994-2008.
-
(2005)
Plant Cell
, vol.17
-
-
Clay, N.K.1
Nelson, T.2
-
8
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
9
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
Cordin, O., Banroques, J., Tanner, N.K., and Linder, P. (2006). The DEAD-box protein family of RNA helicases. Gene 367: 17-37.
-
(2006)
Gene
, vol.367
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
10
-
-
0033133863
-
Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families
-
de la Cruz, J., Kressler, D., and Linder, P. (1999). Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci. 24: 192-198.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 192-198
-
-
de la Cruz, J.1
Kressler, D.2
Linder, P.3
-
11
-
-
0040709003
-
Low temperature signal transduction, gene expression, and cold acclimation: Multiple roles of low temperature
-
In, J.H. Cherry, ed (Berlin: Springer-Verlag)
-
Dhindsa, R.S., and Monroy, A.F. (1994). Low temperature signal transduction, gene expression, and cold acclimation: Multiple roles of low temperature. In Biochemical and Cellular Mechanisms of Stress Tolerance in Plants, J.H. Cherry, ed (Berlin: Springer-Verlag), pp. 501-514.
-
(1994)
Biochemical and Cellular Mechanisms of Stress Tolerance in Plants
, pp. 501-514
-
-
Dhindsa, R.S.1
Monroy, A.F.2
-
12
-
-
66449131193
-
Roles for Arabidopsis CAMTA transcription factors in coldregulated gene expression and freezing tolerance
-
Doherty, C.J., Van Buskirk, H.A., Myers, S.J., and Thomashow, M.F. (2009). Roles for Arabidopsis CAMTA transcription factors in coldregulated gene expression and freezing tolerance. Plant Cell 21: 972-984.
-
(2009)
Plant Cell
, vol.21
, pp. 972-984
-
-
Doherty, C.J.1
van Buskirk, H.A.2
Myers, S.J.3
Thomashow, M.F.4
-
13
-
-
33744482285
-
The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1
-
Dong, C.H., Agarwal, M., Zhang, Y., Xie, Q., and Zhu, J.-K. (2006). The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proc. Natl. Acad. Sci. USA 103: 8281-8286.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8281-8286
-
-
Dong, C.H.1
Agarwal, M.2
Zhang, Y.3
Xie, Q.4
Zhu, J.-K.5
-
14
-
-
79955551575
-
Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis
-
Dong, M.A., Farré, E.M., and Thomashow, M.F. (2011). Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 7241-7246.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7241-7246
-
-
Dong, M.A.1
Farré, E.M.2
Thomashow, M.F.3
-
15
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M., and Lash, A.E. (2002). Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30: 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
16
-
-
51249169759
-
Hybridization in situ of whole-mount messenger RNA in plants
-
Engler, J.A., Van Montagu, M., and Engler, G. (1994). Hybridization in situ of whole-mount messenger RNA in plants. Plant Mol. Biol. Rep. 12: 321-331.
-
(1994)
Plant Mol. Biol. Rep.
, vol.12
, pp. 321-331
-
-
Engler, J.A.1
van Montagu, M.2
Engler, G.3
-
17
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C., et al. (2004). Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol. 5: R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
-
18
-
-
0034527513
-
Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation
-
Gilmour, S.J., Sebolt, A.M., Salazar, M.P., Everard, J.D., and Thomashow, M.F. (2000). Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124: 1854-1865.
-
(2000)
Plant Physiol.
, vol.124
, pp. 1854-1865
-
-
Gilmour, S.J.1
Sebolt, A.M.2
Salazar, M.P.3
Everard, J.D.4
Thomashow, M.F.5
-
19
-
-
0034958920
-
Drosophila Med6 is required for elevated expression of a large but distinct set of developmentally regulated genes
-
Gim, B.S., Park, J.M., Yoon, J.H., Kang, C., and Kim, Y.J. (2001). Drosophila Med6 is required for elevated expression of a large but distinct set of developmentally regulated genes. Mol. Cell. Biol. 21: 5242-5255.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 5242-5255
-
-
Gim, B.S.1
Park, J.M.2
Yoon, J.H.3
Kang, C.4
Kim, Y.J.5
-
20
-
-
21444454906
-
A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis
-
Gong, Z., Dong, C.H., Lee, H., Zhu, J., Xiong, L., Gong, D., Stevenson, B., and Zhu, J.-K. (2005). A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17: 256-267.
-
(2005)
Plant Cell
, vol.17
, pp. 256-267
-
-
Gong, Z.1
Dong, C.H.2
Lee, H.3
Zhu, J.4
Xiong, L.5
Gong, D.6
Stevenson, B.7
Zhu, J.-K.8
-
21
-
-
84875593659
-
A KH domain-containing putative RNA-binding protein is critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis
-
November 21
-
Guan, Q., Wen, C., Zeng, H., and Zhu, J. (November 21, 2012). A KH domain-containing putative RNA-binding protein is critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Mol. Plant http://dx.doi.org/10.1093/mp/sss119.
-
(2012)
Mol. Plant
-
-
Guan, Q.1
Wen, C.2
Zeng, H.3
Zhu, J.4
-
22
-
-
0842286227
-
Cold acclimation and freezing stress tolerance: Role of protein metabolism
-
Guy, C.L. (1990). Cold acclimation and freezing stress tolerance: Role of protein metabolism. Annu. Rev. Plant Physiol. PlantMol. Biol. 41: 187-223.
-
(1990)
Annu. Rev. Plant Physiol. PlantMol. Biol.
, vol.41
, pp. 187-223
-
-
Guy, C.L.1
-
23
-
-
0003035616
-
Caps, cors, dehydrins, and molecular chaperones: Their relationship with low temperature responses in spinach
-
In, J.H. Cherry, ed (Berlin: Springer-Verlag)
-
Guy, C.L., Anderson, J.V., Haskell, D.W., and Li, Q.-B. (1994). Caps, cors, dehydrins, and molecular chaperones: Their relationship with low temperature responses in spinach. In Biochemical and Cellular Mechanisms of Stress Tolerance in Plants, J.H. Cherry, ed (Berlin: Springer-Verlag), pp. 479-499.
-
(1994)
Biochemical and Cellular Mechanisms of Stress Tolerance in Plants
, pp. 479-499
-
-
Guy, C.L.1
Anderson, J.V.2
Haskell, D.W.3
Li, Q.-B.4
-
24
-
-
84868592766
-
Brr2pmediated conformational rearrangements in the spliceosome during activation and substrate repositioning
-
Hahn, D., Kudla, G., Tollervey, D., and Beggs, J.D. (2012). Brr2pmediated conformational rearrangements in the spliceosome during activation and substrate repositioning. Genes Dev. 26: 2408-2421.
-
(2012)
Genes Dev.
, vol.26
, pp. 2408-2421
-
-
Hahn, D.1
Kudla, G.2
Tollervey, D.3
Beggs, J.D.4
-
25
-
-
33751006151
-
RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis
-
Hong, F., Breitling, R., McEntee, C.W., Wittner, B.S., Nemhauser, J.L., and Chory, J. (2006). RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 22: 2825-2827.
-
(2006)
Bioinformatics
, vol.22
, pp. 2825-2827
-
-
Hong, F.1
Breitling, R.2
McEntee, C.W.3
Wittner, B.S.4
Nemhauser, J.L.5
Chory, J.6
-
26
-
-
0033580840
-
Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase
-
Iost, I., Dreyfus, M., and Linder, P. (1999). Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase. J. Biol. Chem. 274: 17677-17683.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17677-17683
-
-
Iost, I.1
Dreyfus, M.2
Linder, P.3
-
27
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R.A., Hobbs, B., Collin, F., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U., and Speed, T.P. (2003). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
28
-
-
0032125081
-
HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis
-
Ishitani, M., Xiong, L., Lee, H.J., Stevenson, B., and Zhu, J.-K. (1998). HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis. Plant Cell 10: 1151-1161.
-
(1998)
Plant Cell
, vol.10
, pp. 1151-1161
-
-
Ishitani, M.1
Xiong, L.2
Lee, H.J.3
Stevenson, B.4
Zhu, J.-K.5
-
29
-
-
0031277694
-
Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways
-
Ishitani, M., Xiong, L., Stevenson, B., and Zhu, J.-K. (1997). Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 9: 1935-1949.
-
(1997)
Plant Cell
, vol.9
, pp. 1935-1949
-
-
Ishitani, M.1
Xiong, L.2
Stevenson, B.3
Zhu, J.-K.4
-
30
-
-
0032478635
-
Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance
-
Jaglo-Ottosen, K.R., Gilmour, S.J., Zarka, D.G., Schabenberger, O., and Thomashow, M.F. (1998). Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280: 104-106.
-
(1998)
Science
, vol.280
, pp. 104-106
-
-
Jaglo-Ottosen, K.R.1
Gilmour, S.J.2
Zarka, D.G.3
Schabenberger, O.4
Thomashow, M.F.5
-
31
-
-
0035983615
-
Arabidopsis map-based cloning in the postgenome era
-
Jander, G., Norris, S.R., Rounsley, S.D., Bush, D.F., Levin, I.M., and Last, R.L. (2002). Arabidopsis map-based cloning in the postgenome era. Plant Physiol. 129: 440-450.
-
(2002)
Plant Physiol.
, vol.129
, pp. 440-450
-
-
Jander, G.1
Norris, S.R.2
Rounsley, S.D.3
Bush, D.F.4
Levin, I.M.5
Last, R.L.6
-
32
-
-
0028282551
-
A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
-
Kim, Y.J., Björklund, S., Li, Y., Sayre, M.H., and Kornberg, R.D. (1994). A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77: 599-608.
-
(1994)
Cell
, vol.77
, pp. 599-608
-
-
Kim, Y.J.1
Björklund, S.2
Li, Y.3
Sayre, M.H.4
Kornberg, R.D.5
-
33
-
-
63349106221
-
Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function
-
Knight, H., Mugford, S.G., Ulker, B., Gao, D., Thorlby, G., and Knight, M.R. (2009). Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function. Plant J. 58: 97-108.
-
(2009)
Plant J.
, vol.58
, pp. 97-108
-
-
Knight, H.1
Mugford, S.G.2
Ulker, B.3
Gao, D.4
Thorlby, G.5
Knight, M.R.6
-
34
-
-
33745765847
-
STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis
-
Lee, B.H., Kapoor, A., Zhu, J., and Zhu, J.-K. (2006). STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. Plant Cell 18: 1736-1749.
-
(2006)
Plant Cell
, vol.18
, pp. 1736-1749
-
-
Lee, B.H.1
Kapoor, A.2
Zhu, J.3
Zhu, J.-K.4
-
35
-
-
0035312840
-
The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning
-
Lee, H., Xiong, L., Gong, Z., Ishitani, M., Stevenson, B., and Zhu, J.-K. (2001). The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning. Genes Dev. 15: 912-924.
-
(2001)
Genes Dev.
, vol.15
, pp. 912-924
-
-
Lee, H.1
Xiong, L.2
Gong, Z.3
Ishitani, M.4
Stevenson, B.5
Zhu, J.-K.6
-
36
-
-
0000496457
-
Requirement for a functional interaction between mediator components Med6 and Srb4 in RNA polymerase II transcription
-
Lee, Y.C., and Kim, Y.J. (1998). Requirement for a functional interaction between mediator components Med6 and Srb4 in RNA polymerase II transcription. Mol. Cell. Biol. 18: 5364-5370.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 5364-5370
-
-
Lee, Y.C.1
Kim, Y.J.2
-
37
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., Lam, T.W., Yiu, S.M., Kristiansen, K., and Wang, J. (2009). SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
38
-
-
0032144961
-
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis
-
Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and Shinozaki, K. (1998). Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406.
-
(1998)
Plant Cell
, vol.10
, pp. 1391-1406
-
-
Liu, Q.1
Kasuga, M.2
Sakuma, Y.3
Abe, H.4
Miura, S.5
Yamaguchi-Shinozaki, K.6
Shinozaki, K.7
-
39
-
-
0036100299
-
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis
-
Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.R., Carré, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2: 629-641.
-
(2002)
Dev. Cell
, vol.2
, pp. 629-641
-
-
Mizoguchi, T.1
Wheatley, K.2
Hanzawa, Y.3
Wright, L.4
Mizoguchi, M.5
Song, H.R.6
Carré, I.A.7
Coupland, G.8
-
40
-
-
0033080470
-
The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration
-
Medina, J., Bargues, M., Terol, J., Pérez-Alonso, M., and Salinas, J. (1999). The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol. 119: 463-470.
-
(1999)
Plant Physiol.
, vol.119
, pp. 463-470
-
-
Medina, J.1
Bargues, M.2
Terol, J.3
Pérez-Alonso, M.4
Salinas, J.5
-
41
-
-
0034703012
-
Prohibitins, stomatins, and plant disease response genes compose a protein superfamily that controls cell proliferation, ion channel regulation, and death
-
Nadimpalli, R., Yalpani, N., Johal, G.S., and Simmons, C.R. (2000). Prohibitins, stomatins, and plant disease response genes compose a protein superfamily that controls cell proliferation, ion channel regulation, and death. J. Biol. Chem. 275: 29579-29586.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29579-29586
-
-
Nadimpalli, R.1
Yalpani, N.2
Johal, G.S.3
Simmons, C.R.4
-
42
-
-
63049122216
-
Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response
-
Nakamichi, N., Kusano, M., Fukushima, A., Kita, M., Ito, S., Yamashino, T., Saito, K., Sakakibara, H., and Mizuno, T. (2009). Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol. 50: 447-462.
-
(2009)
Plant Cell Physiol.
, vol.50
, pp. 447-462
-
-
Nakamichi, N.1
Kusano, M.2
Fukushima, A.3
Kita, M.4
Ito, S.5
Yamashino, T.6
Saito, K.7
Sakakibara, H.8
Mizuno, T.9
-
43
-
-
70349739736
-
The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets
-
Nicol, J.W., Helt, G.A., Blanchard, S.G., Jr., Raja, A., and Loraine, A.E. (2009). The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets. Bioinformatics 25: 2730-2731.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard Jr., S.G.3
Raja, A.4
Loraine, A.E.5
-
44
-
-
1642289015
-
CBF2/ DREB1C is a negative regulator of CBF1/DREB1B and CBF3/ DREB1A expression and plays a central role in stress tolerance in Arabidopsis
-
Novillo, F., Alonso, J.M., Ecker, J.R., and Salinas, J. (2004). CBF2/ DREB1C is a negative regulator of CBF1/DREB1B and CBF3/ DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proc. Natl. Acad. Sci. USA 101: 3985-3990.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3985-3990
-
-
Novillo, F.1
Alonso, J.M.2
Ecker, J.R.3
Salinas, J.4
-
45
-
-
38049112842
-
Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon
-
Novillo, F., Medina, J., and Salinas, J. (2007). Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. Proc. Natl. Acad. Sci. USA 104: 21002-21007.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 21002-21007
-
-
Novillo, F.1
Medina, J.2
Salinas, J.3
-
46
-
-
0009375673
-
Regulation of low temperatureinduced genes during cold acclimation of Arabidopsis thaliana
-
In, J.H. Cherry, ed (Berlin: Springer-Verlag)
-
Palva, E.T., Welin, B., Vahala, T., Olson, A., Nordin-Henriksson, K., Mantyla, E., and Lang, V. (1994). Regulation of low temperatureinduced genes during cold acclimation of Arabidopsis thaliana. In Biochemical and Cellular Mechanisms of Stress Tolerance in Plants, J.H. Cherry, ed (Berlin: Springer-Verlag), pp. 527-542.
-
(1994)
Biochemical and Cellular Mechanisms of Stress Tolerance in Plants
, pp. 527-542
-
-
Palva, E.T.1
Welin, B.2
Vahala, T.3
Olson, A.4
Nordin-Henriksson, K.5
Mantyla, E.6
Lang, V.7
-
47
-
-
32044464800
-
Ancient origin of reggie (flotillin), reggie-like, and other lipid-raft proteins: Convergent evolution of the SPFH domain
-
Rivera-Milla, E., Stuermer, C.A.O., and Málaga-Trillo, E. (2006). Ancient origin of reggie (flotillin), reggie-like, and other lipid-raft proteins: Convergent evolution of the SPFH domain. Cell. Mol. Life Sci. 63: 343-357.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 343-357
-
-
Rivera-Milla, E.1
Stuermer, C.A.O.2
Málaga-Trillo, E.3
-
48
-
-
0001373861
-
Changes in leaf ultrastructure and carbohydrates in Arabidopsis thaliana (Heynh) cv
-
Ristic, Z., and Ashworth, E.N. (1993). Changes in leaf ultrastructure and carbohydrates in Arabidopsis thaliana (Heynh) cv. Columbia during rapid cold acclimation. Protoplasma 172: 111-123.
-
(1993)
Columbia during rapid cold acclimation. Protoplasma
, vol.172
, pp. 111-123
-
-
Ristic, Z.1
Ashworth, E.N.2
-
49
-
-
1542344429
-
DEAD-box proteins: The driving forces behind RNA metabolism
-
Rocak, S., and Linder, P. (2004). DEAD-box proteins: The driving forces behind RNA metabolism. Nat. Rev. Mol. Cell Biol. 5: 232-241.
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 232-241
-
-
Rocak, S.1
Linder, P.2
-
50
-
-
58949096806
-
Cold signaling and cold acclimation in plants
-
Ruelland, E.V.M., Zachowski, A., and Vaughn, H. (2009). Cold signaling and cold acclimation in plants. Adv. Bot. Res. 49: 36-54.
-
(2009)
Adv. Bot. Res.
, vol.49
, pp. 36-54
-
-
Ruelland, E.V.M.1
Zachowski, A.2
Vaughn, H.3
-
51
-
-
0006180620
-
The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering
-
Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carré, I.A., and Coupland, G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219-1229.
-
(1998)
Cell
, vol.93
, pp. 1219-1229
-
-
Schaffer, R.1
Ramsay, N.2
Samach, A.3
Corden, S.4
Putterill, J.5
Carré, I.A.6
Coupland, G.7
-
52
-
-
84864457739
-
Ethylene signaling negatively regulates freezing tolerance by repressing expression of CBF and type-A ARR genes in Arabidopsis
-
Shi, Y., Tian, S., Hou, L., Huang, X., Zhang, X., Guo, H., and Yang, S. (2012). Ethylene signaling negatively regulates freezing tolerance by repressing expression of CBF and type-A ARR genes in Arabidopsis. Plant Cell 24: 2578-2595.
-
(2012)
Plant Cell
, vol.24
, pp. 2578-2595
-
-
Shi, Y.1
Tian, S.2
Hou, L.3
Huang, X.4
Zhang, X.5
Guo, H.6
Yang, S.7
-
53
-
-
0031017671
-
Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit
-
Stockinger, E.J., Gilmour, S.J., and Thomashow, M.F. (1997). Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc. Natl. Acad. Sci. USA 94: 1035-1040.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1035-1040
-
-
Stockinger, E.J.1
Gilmour, S.J.2
Thomashow, M.F.3
-
54
-
-
0000417227
-
An excised leaflet test for evaluation potato frost tolerance
-
Sukumaran, N.P., and Weiser, C.J. (1972). An excised leaflet test for evaluation potato frost tolerance. HortScience 7: 467-468.
-
(1972)
HortScience
, vol.7
, pp. 467-468
-
-
Sukumaran, N.P.1
Weiser, C.J.2
-
55
-
-
0001956712
-
Arabidopsis thaliana as a model for studying mechanisms of plant cold tolerance
-
In, E.M. Meyerowitz and C.R. Somerville, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
-
Thomashow, M.F. (1994). Arabidopsis thaliana as a model for studying mechanisms of plant cold tolerance. In Arabidopsis, E.M. Meyerowitz and C.R. Somerville, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 807-834.
-
(1994)
Arabidopsis
, pp. 807-834
-
-
Thomashow, M.F.1
-
56
-
-
0033498862
-
Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms
-
Thomashow, M.F. (1999). Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 571-599.
-
(1999)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.50
, pp. 571-599
-
-
Thomashow, M.F.1
-
57
-
-
0001590871
-
The SPFH domain: Implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins
-
Tavernarakis, N., Driscoll, M., and Kyrpides, N.C. (1999). The SPFH domain: Implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins. Trends Biochem. Sci. 24: 425-427.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 425-427
-
-
Tavernarakis, N.1
Driscoll, M.2
Kyrpides, N.C.3
-
58
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G., Tibshirani, R., and Chu, G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98: 5116-5121.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
59
-
-
12844280128
-
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis
-
Vogel, J.T., Zarka, D.G., Van Buskirk, H.A., Fowler, S.G., and Thomashow, M.F. (2005). Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J. 41: 195-211.
-
(2005)
Plant J.
, vol.41
, pp. 195-211
-
-
Vogel, J.T.1
Zarka, D.G.2
van Buskirk, H.A.3
Fowler, S.G.4
Thomashow, M.F.5
-
60
-
-
0037342553
-
An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus
-
Voinnet, O., Rivas, S., Mestre, P., and Baulcombe, D. (2003). An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J. 33: 949-956.
-
(2003)
Plant J.
, vol.33
, pp. 949-956
-
-
Voinnet, O.1
Rivas, S.2
Mestre, P.3
Baulcombe, D.4
-
61
-
-
0030220422
-
Isolation of mutations affecting the development of freezing tolerance in Arabidopsis thaliana (L.) Heynh
-
Warren, G., McKown, R., Marin, A.L., and Teutonico, R. (1996). Isolation of mutations affecting the development of freezing tolerance in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 111: 1011-1019.
-
(1996)
Plant Physiol.
, vol.111
, pp. 1011-1019
-
-
Warren, G.1
McKown, R.2
Marin, A.L.3
Teutonico, R.4
-
62
-
-
0032568796
-
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression
-
Wang, Z.Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93: 1207-1217.
-
(1998)
Cell
, vol.93
, pp. 1207-1217
-
-
Wang, Z.Y.1
Tobin, E.M.2
-
63
-
-
0032560462
-
Eskimo1 mutants of Arabidopsis are constitutively freezing-tolerant
-
Xin, Z., and Browse, J. (1998). Eskimo1 mutants of Arabidopsis are constitutively freezing-tolerant. Proc. Natl. Acad. Sci. USA 95: 7799-7804.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7799-7804
-
-
Xin, Z.1
Browse, J.2
-
64
-
-
0034816169
-
The Arabidopsis LOS5/ABA3 locus encodes a molybdenum cofactor sulfurase and modulates cold stress-and osmotic stress-responsive gene expression
-
Xiong, L., Ishitani, M., Lee, H., and Zhu, J.-K. (2001). The Arabidopsis LOS5/ABA3 locus encodes a molybdenum cofactor sulfurase and modulates cold stress-and osmotic stress-responsive gene expression. Plant Cell 13: 2063-2083.
-
(2001)
Plant Cell
, vol.13
, pp. 2063-2083
-
-
Xiong, L.1
Ishitani, M.2
Lee, H.3
Zhu, J.-K.4
-
65
-
-
0028370581
-
A novel cisacting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress
-
Yamaguchi-Shinozaki, K., and Shinozaki, K. (1994). A novel cisacting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell 6: 251-264.
-
(1994)
Plant Cell
, vol.6
, pp. 251-264
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
66
-
-
34547105040
-
Constitutive expression of CIR1 (RVE2) affects several circadianregulated processes and seed germination in Arabidopsis
-
Zhang, X., Chen, Y., Wang, Z.-Y., Chen, Z., Gu, H., and Qu, L.-J. (2007). Constitutive expression of CIR1 (RVE2) affects several circadianregulated processes and seed germination in Arabidopsis. Plant J. 51: 512-525.
-
(2007)
Plant J.
, vol.51
, pp. 512-525
-
-
Zhang, X.1
Chen, Y.2
Wang, Z.-Y.3
Chen, Z.4
Gu, H.5
Qu, L.-J.6
-
67
-
-
42449092033
-
Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance
-
Zhu, J., Jeong, J.C., Zhu, Y., Sokolchik, I., Miyazaki, S., Zhu, J.-K., Hasegawa, P.M., Bohnert, H.J., Shi, H., Yun, D.J., and Bressan, R.A. (2008). Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proc. Natl. Acad. Sci. USA 105: 4945-4950.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4945-4950
-
-
Zhu, J.1
Jeong, J.C.2
Zhu, Y.3
Sokolchik, I.4
Miyazaki, S.5
Zhu, J.-K.6
Hasegawa, P.M.7
Bohnert, H.J.8
Shi, H.9
Yun, D.J.10
Bressan, R.A.11
-
68
-
-
3042711793
-
An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway
-
Zhu, J., Shi, H., Lee, B.H., Damsz, B., Cheng, S., Stirm, V., Zhu, J.-K., Hasegawa, P.M., and Bressan, R.A. (2004). An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proc. Natl. Acad. Sci. USA 101: 9873-9878.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9873-9878
-
-
Zhu, J.1
Shi, H.2
Lee, B.H.3
Damsz, B.4
Cheng, S.5
Stirm, V.6
Zhu, J.-K.7
Hasegawa, P.M.8
Bressan, R.A.9
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