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Volumn 192, Issue , 2014, Pages 41-48

Statistical allosteric coupling to the active site indole ring flip equilibria in the FK506-binding domain

Author keywords

Allostery; Concerted transition; FKBP12; Molecular simulation; NMR; Statistical coupling

Indexed keywords

FK 506 BINDING PROTEIN; FK 506 BINDING PROTEIN 51; FK 506 BINDING PROTEIN 52; INDOLE DERIVATIVE; NITROGEN; UNCLASSIFIED DRUG; INDOLE; TACROLIMUS; TACROLIMUS BINDING PROTEIN 5;

EID: 84903863906     PISSN: 03014622     EISSN: 18734200     Source Type: Journal    
DOI: 10.1016/j.bpc.2014.06.004     Document Type: Article
Times cited : (6)

References (47)
  • 1
    • 44349186241 scopus 로고    scopus 로고
    • Functional drift of sequence attributes in the FK506-binding proteins (FKBPs)
    • A. Galat Functional drift of sequence attributes in the FK506-binding proteins (FKBPs) J. Chem. Inf. Model. 48 2008 1118 1130
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 1118-1130
    • Galat, A.1
  • 2
    • 33845961032 scopus 로고    scopus 로고
    • Comparative analysis of calcineurin inhibition by complexes of immunosuppressive drugs with human FK506 binding proteins
    • DOI 10.1021/bi061616p
    • M. Weiwad, F. Edlich, S. Kilka, F. Erdmann, F. Jarczowski, M. Dorn, M.C. Moutty, and G. Fischer Comparative analysis of calcineurin inhibition by complexes of immunosuppressive drugs with human FK506 binding proteins Biochemistry 45 2006 15776 15784 (Pubitemid 46032498)
    • (2006) Biochemistry , vol.45 , Issue.51 , pp. 15776-15784
    • Weiwad, M.1    Edlich, F.2    Kilka, S.3    Erdmann, F.4    Jarczowski, F.5    Dorn, M.6    Moutty, M.-C.7    Fischer, G.8
  • 4
    • 0025893168 scopus 로고
    • Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes
    • J. Liu, J.J.D. Farmer, W.S. Lane, J. Friedman, I. Wiessman, and S.L. Schreiber Calcineurin is a common target for cyclophilin-cyclosporin A and FKBP-FK506 complexes Cell 66 1991 807 815 (Pubitemid 121001714)
    • (1991) Cell , vol.66 , Issue.4 , pp. 807-815
    • Liu, J.1    Farmer Jr., J.O.2    Lane, W.S.3    Friedman, J.4    Weissman, I.5    Schreiber, S.L.6
  • 12
    • 0022918191 scopus 로고
    • A 59-kilodalton protein associated with progestin, estrogen, androgen, and glucocorticoid receptors
    • DOI 10.1021/bi00366a043
    • P.K. Tai, Y. Maeda, K. Nakao, N.G. Wakim, J.L. Duhring, and L.E. Faber A 59-kilodalton protein associated with progestin, estrogen, androgen and glucocorticoid receptors Biochemistry 25 1986 5269 5275 (Pubitemid 17016541)
    • (1986) Biochemistry , vol.25 , Issue.18 , pp. 5269-5275
    • Tai Maeda, P.-K.K.Y.1    Nakao, K.2
  • 13
    • 0025605444 scopus 로고
    • Hsp56: A novel heat shock protein associated with untransformed steroid receptor complexes
    • E.R. Sanchez HSP56: a novel heat shock protein associated with untransformed steroid receptor complexes J. Biol. Chem. 265 1990 22067 22070 (Pubitemid 120014264)
    • (1990) Journal of Biological Chemistry , vol.265 , Issue.36 , pp. 22067-22070
    • Sanchez, E.R.1
  • 14
    • 0025233648 scopus 로고
    • Purification of unactivated progesterone receptor and identification of novel receptor-associated proteins
    • D.F. Smith, L.E. Faber, and D.O. Toft Purification of unactivated progesterone receptor and identification of novel receptor-associated proteins J. Biol. Chem. 265 1990 3996 4003
    • (1990) J. Biol. Chem. , vol.265 , pp. 3996-4003
    • Smith, D.F.1    Faber, L.E.2    Toft, D.O.3
  • 17
    • 0033524943 scopus 로고    scopus 로고
    • Crystal structure of the cytoplasmic domain of the type I TGFβ receptor in complex with FKBP12
    • DOI 10.1016/S0092-8674(00)80555-3
    • M. Huse, Y.G. Chen, J. Massague, and J. Kuriyan Crystal structure of the cytoplasmic domain of the type I TGF-beta receptor in complex with FKBP12 Cell 96 1999 425 436 (Pubitemid 29077596)
    • (1999) Cell , vol.96 , Issue.3 , pp. 425-436
    • Huse, M.1    Chen, Y.-G.2    Massague, J.3    Kuriyan, J.4
  • 19
    • 37549067731 scopus 로고    scopus 로고
    • Noncatalytic role of the FKBP52 peptidyl-prolyl isomerase domain in the regulation of steroid hormone signaling
    • D.L. Riggs, M.B. Cox, H.L. Tardif, M. Hessling, J. Buchner, and D.F. Smith Noncatalytic role of the FKBP52 peptidyl-prolyl isomerase domain in the regulation of steroid hormone signaling Mol. Cell. Biol. 27 2007 8658 8669
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 8658-8669
    • Riggs, D.L.1    Cox, M.B.2    Tardif, H.L.3    Hessling, M.4    Buchner, J.5    Smith, D.F.6
  • 20
    • 84880067068 scopus 로고    scopus 로고
    • Analyzing the visible conformational substates of the FK506-binding protein FKBP12
    • S.M. Mustafi, H. Chen, H. Li, D.M. LeMaster, and G. Hernández Analyzing the visible conformational substates of the FK506-binding protein FKBP12 Biochem. J. 453 2013 371 380
    • (2013) Biochem. J. , vol.453 , pp. 371-380
    • Mustafi, S.M.1    Chen, H.2    Li, H.3    Lemaster, D.M.4    Hernández, G.5
  • 22
    • 61349196789 scopus 로고    scopus 로고
    • Differential responses of the backbone and side-chain conformational dynamics in FKBP12 upon binding the transition-state analog FK506: Implications for transition-state stabilization and target protein recognition
    • U. Brath, and M. Akke Differential responses of the backbone and side-chain conformational dynamics in FKBP12 upon binding the transition-state analog FK506: implications for transition-state stabilization and target protein recognition J. Mol. Biol. 387 2009 233 244
    • (2009) J. Mol. Biol. , vol.387 , pp. 233-244
    • Brath, U.1    Akke, M.2
  • 23
    • 78650912710 scopus 로고    scopus 로고
    • Multi-timescale dynamics study of FKBP12 along the rapamycin-mTOR binding coordinate
    • P.J. Sapienza, R.V. Mauldin, and A.L. Lee Multi-timescale dynamics study of FKBP12 along the rapamycin-mTOR binding coordinate J. Mol. Biol. 405 2011 378 394
    • (2011) J. Mol. Biol. , vol.405 , pp. 378-394
    • Sapienza, P.J.1    Mauldin, R.V.2    Lee, A.L.3
  • 24
    • 84896827968 scopus 로고    scopus 로고
    • Structural basis of conformational transitions in the active site and 80's loop in the FK506-binding protein FKBP12
    • S.M. Mustafi, M. Brecher, J. Zhang, H. Li, D.M. LeMaster, and G. Hernández Structural basis of conformational transitions in the active site and 80's loop in the FK506-binding protein FKBP12 Biochem. J. 458 2014 525 536
    • (2014) Biochem. J. , vol.458 , pp. 525-536
    • Mustafi, S.M.1    Brecher, M.2    Zhang, J.3    Li, H.4    Lemaster, D.M.5    Hernández, G.6
  • 27
  • 28
    • 0141748498 scopus 로고    scopus 로고
    • Energetic and structural analysis of the role of tryptophan 59 in FKBP12
    • DOI 10.1021/bi020564a
    • K.F. Fulton, S.E. Jackson, and A.M. Buckle Energetic and structural analysis of the role of tryptophan 59 in FKBP12 Biochemistry 42 2003 2364 2372 (Pubitemid 36255210)
    • (2003) Biochemistry , vol.42 , Issue.8 , pp. 2364-2372
    • Fulton, K.F.1    Jackson, S.E.2    Buckle, A.M.3
  • 29
    • 23044435317 scopus 로고    scopus 로고
    • Statistical and molecular dynamics studies of buried waters in globular proteins
    • DOI 10.1002/prot.20511
    • S. Park, and J.G. Saven Statistical and molecular dynamics studies of buried waters in globular proteins Proteins 60 2005 450 463 (Pubitemid 41061638)
    • (2005) Proteins: Structure, Function and Genetics , vol.60 , Issue.3 , pp. 450-463
    • Park, S.1    Saven, J.G.2
  • 30
    • 48249141040 scopus 로고    scopus 로고
    • Allostery and cooperativity revisited
    • Q. Cui, and M. Karplus Allostery and cooperativity revisited Prot. Sci. 17 2008 1295 1307
    • (2008) Prot. Sci. , vol.17 , pp. 1295-1307
    • Cui, Q.1    Karplus, M.2
  • 31
    • 32344434479 scopus 로고    scopus 로고
    • The changing landscape of protein allostery
    • DOI 10.1016/j.sbi.2006.01.003, PII S0959440X06000042
    • J.F. Swain, and L.M. Gierasch The changing landscape of protein allostery Curr. Opin. Struct. Biol. 16 2006 102 108 (Pubitemid 43221878)
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.1 , pp. 102-108
    • Swain, J.F.1    Gierasch, L.M.2
  • 32
    • 84896827968 scopus 로고    scopus 로고
    • Differential conformational dynamics in the closely homologous FK506-binding domains of FKBP51 and FKBP52
    • S.M. Mustafi, D.M. LeMaster, and G. Hernández Differential conformational dynamics in the closely homologous FK506-binding domains of FKBP51 and FKBP52 Biochem. J. 458 2014 525 536
    • (2014) Biochem. J. , vol.458 , pp. 525-536
    • Mustafi, S.M.1    Lemaster, D.M.2    Hernández, G.3
  • 33
    • 67650034385 scopus 로고    scopus 로고
    • Polarization and polarizability assessed by protein amide acidity
    • G. Hernández, J.S. Anderson, and D.M. LeMaster Polarization and polarizability assessed by protein amide acidity Biochemistry 48 2009 6482 6494
    • (2009) Biochemistry , vol.48 , pp. 6482-6494
    • Hernández, G.1    Anderson, J.S.2    Lemaster, D.M.3
  • 35
    • 0000450918 scopus 로고    scopus 로고
    • An improved double-tuned and isotope-filtered pulse scheme based on a pulsed field gradient and a wide-band inversion shaped pulse
    • K. Ogura, H. Teresawa, and F. Inagaki An improved double-tuned and isotope-filtered pulse scheme based on a pulsed field gradient and a wide-band inversion shaped pulse J. Biomol. NMR 8 1996 492 498 (Pubitemid 126706803)
    • (1996) Journal of Biomolecular NMR , vol.8 , Issue.4 , pp. 492-498
    • Ogura, K.1    Terasawa, H.2    Inagaki, F.3
  • 37
    • 79957986223 scopus 로고    scopus 로고
    • Structural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90
    • A. Bracher, C. Kozany, A.K. Thost, and F. Hausch Structural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90 Acta Crystallogr. D 67 2011 549 559
    • (2011) Acta Crystallogr. D , vol.67 , pp. 549-559
    • Bracher, A.1    Kozany, C.2    Thost, A.K.3    Hausch, F.4
  • 41
    • 0028177578 scopus 로고
    • Atomic structure of the immunophilin FKBP13-FK506 complex: Insights into the composite binding surface for calcineurin
    • L.W. Schultz, P.K. Martin, J. Liang, S.L. Schreiber, and J. Clardy Atomic structure of the immunophilin FKBP13-FK506 complex: insights into the composite binding surface for calcineurin J. Am. Chem. Soc. 116 1994 3129 3130
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 3129-3130
    • Schultz, L.W.1    Martin, P.K.2    Liang, J.3    Schreiber, S.L.4    Clardy, J.5
  • 42
    • 0030003625 scopus 로고    scopus 로고
    • Structure of the human 25 kDa FK506 binding protein complexed with rapamycin
    • DOI 10.1021/ja953139w
    • J. Liang, D.T. Hung, S.L. Schreiber, and J. Clardy Structure of the human 25 kDa FK506 binding protein complexed with rapamycin J. Am. Chem. Soc. 118 1996 1231 1232 (Pubitemid 26075553)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.5 , pp. 1231-1232
    • Liang, J.1    Hung, D.T.2    Schreiber, S.L.3    Clardy, J.4
  • 43
    • 34249785354 scopus 로고    scopus 로고
    • Evolution of the 12 kDa FK506-binding protein gene
    • DOI 10.1042/BC20060125
    • J.A. Somarelli, and R.J. Herrara Evolution of the 12 kDa FK506-binding protein gene Biol. Cell. 99 2007 311 321 (Pubitemid 46845993)
    • (2007) Biology of the Cell , vol.99 , Issue.6 , pp. 311-321
    • Somarelli, J.A.1    Herrera, R.J.2
  • 44
    • 0021470624 scopus 로고
    • Buried surface area, conformational entropy, and protein stability
    • A.A. Rashin Buried surface area, conformational entropy, and protein stability Biopolymers 23 1984 1605 1620
    • (1984) Biopolymers , vol.23 , pp. 1605-1620
    • Rashin, A.A.1
  • 45
    • 0033543590 scopus 로고    scopus 로고
    • A piston model for transmembrane signaling of the aspartate receptor
    • K.M. Otteman, W. Xiao, Y.K. Shin, and J.D.E. Koshland A piston model for transmembrane signaling of the aspartate receptor Science 285 1999 1751 1753
    • (1999) Science , vol.285 , pp. 1751-1753
    • Otteman, K.M.1    Xiao, W.2    Shin, Y.K.3    Koshland, J.D.E.4
  • 47
    • 77954387071 scopus 로고    scopus 로고
    • Many local motions cooperate to produce the adenylate kinase conformational transition
    • M.D. Daily, J.G.N. Phillips, and Q. Cui Many local motions cooperate to produce the adenylate kinase conformational transition J. Mol. Biol. 400 2010 618 631
    • (2010) J. Mol. Biol. , vol.400 , pp. 618-631
    • Daily, M.D.1    Phillips, J.G.N.2    Cui, Q.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.