Bird to human transmission biases and vaccine escape mutants in H5N1 infections

PLoS ONE

Volumn 9, Issue 7, 2014, Pages

  Wagh, Kshitij ^a,b   Bhatia, Aatish ^a   Greenbaum, Benjamin D ^c,d   Bhanot, Gyan ^a,b,d  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS CANCER INSTITUTE OF NEW JERSEY   (United States)

^c MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^d INSTITUTE FOR ADVANCED STUDY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INFLUENZA VACCINE;

AMINO ACID SEQUENCE; ANTIVIRAL RESISTANCE; ARTICLE; BIRD; CHINA; DISEASE TRANSMISSION; EGYPT; GLYCOSYLATION; HUMAN; INDONESIA; INFECTION SENSITIVITY; INFLUENZA A (H5N1); INFLUENZA VIRUS A; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; RECEPTOR BINDING; VIRUS ISOLATION; VIRUS MUTATION; VIRUS RESISTANCE; VIRUS STRAIN; ANIMAL; AVIAN INFLUENZA; GENETICS; IMMUNOLOGY; INFLUENZA; INFLUENZA VIRUS A H5N1; MUTATION; TRANSMISSION;

ANIMALS; BIRDS; DISEASE TRANSMISSION, INFECTIOUS; HUMANS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA VACCINES; INFLUENZA, HUMAN; MUTATION;

EID: 84903794604     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100754     Document Type: Article

References (28)

1. Guan Y, Poon LLM, Cheung CY, Ellis TM, Lim W, et al. (2004) H5N1 influenza: a protean pandemic threat. Proc Natl Acad Sci U S A 101: 8156-8161. Available: http://www.pnas.org/content/101/21/8156.short. Accessed 2013 May 8.
2. Peiris JSM, de Jong MD, Guan Y (2007) Avian influenza virus (H5N1): a threat to human health. Clin Microbiol Rev 20: 243-267. Available: http://cmr.asm.org/content/20/2/243.short. Accessed 2013 March 22.
3. Sambhara S, Poland GA (2010) H5N1 Avian influenza: preventive and therapeutic strategies against a pandemic. Annu Rev Med 61: 187-198. Available: http://www.annualreviews.org/doi/abs/10.1146/annurev.med.050908.132031? journalCode =med. Accessed 2013 March 17.
4. Osterholm MT (2005) Preparing for the Next Pandemic. N Engl J Med 352: 1839-42. Available: http://www.nejm.org/doi/full/10.1056/NEJMp058068. Accessed 2013 May 8.
5. To KK, Ng KH, Que T-L, Chan JM, Tsang K-Y, et al. (2012) Avian influenza A H5N1 virus: a continuous threat to humans. Emerg Microbes Infect 1: e25. Available: http://dx.doi.org/10.1038/emi.2012.24. Accessed 2013 March 3.
6. WHO | Cumulative number of confirmed human cases of avian influenza A(H5N1) reported to WHO (n.d.). Available: http://www.who.int/influenza/human- animal-interface/H5N1-cumulative-table-archives/en/. Accessed 2013 May 8.
7. Ungchusak K, Auewarakul P, Dowell SF, Kitphati R, Auwanit W, et al. (2005) Probable Person-to-Person Transmission of Avian Influenza A (H5N1). N Engl J Med 352: 333-340. Available: http://www.nejm.org/doi/full/10.1056/ nejmoa044021. Accessed 2013 May 8.
8. Russell CA, Fonville JM, Brown AEX, Burke DF, Smith DL, et al. (2012) The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host. Science 336: 1541-1547. Available: http://www.sciencemag.org/content/336/6088/1541.abstract. Accessed 2013 March 3.
9. Imai M, Watanabe T, Hatta M, Das SC, Ozawa M, et al. (2012) Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature 486: 420-428. Available: http://dx.doi.org/10.1038/nature10831. Accessed 2013 February 27.
10. Herfst S, Schrauwen EJA, Linster M, Chutinimitkul S, de Wit E, et al. (2012) Airborne transmission of influenza A/H5N1 virus between ferrets. Science 336: 1534-1541. Available: http://www.sciencemag.org/content/336/6088/1534. abstract. Accessed 2013 February 27.
11. Li C, Bu Z, Chen H (2014) Avian influenza vaccines against H5N1 "bird flu." Trends Biotechnol: 1-10. Available: http://www.ncbi.nlm. nih.gov/pubmed/24491922.
12. Cattoli G, Milani A, Temperton N, Zecchin B, Buratin A, et al. (2011) Antigenic drift in H5N1 avian influenza virus in poultry is driven by mutations in major antigenic sites of the hemagglutinin molecule analogous to those for human influenza virus. J Virol 85: 8718-8724. Available: http://jvi.asm.org/ content/85/17/8718.short. Accessed 2013 May 30.
13. Duvvuri VRSK, Duvvuri B, Cuff WR, Wu GE, Wu J (2009) Role of positive selection pressure on the evolution of H5N1 hemagglutinin. Genomics Proteomics Bioinformatics 7: 47-56. Available: http://dx.doi.org/10.1016/S1672-0229(08) 60032-7. Accessed 2013 May 6.
14. Wei K, Chen Y, Chen J, Wu L, Xie D (2012) Evolution and adaptation of hemagglutinin gene of human H5N1 influenza virus. Virus Genes 44: 450-458. Available: http://www.ncbi.nlm.nih.gov/pubmed/22286608. Accessed 2013 May 6.
15. Smith GJD, Naipospos TSP, Nguyen TD, de Jong MD, Vijaykrishna D, et al. (2006) Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350: 258-268. Available: http://europepmc.org/abstract/MED/16713612/reload = 0. Accessed 2013 March 2.
16. Stevens J, Blixt O, Tumpey TM, Taubenberger JK, Paulson JC, et al. (2006) Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science 312: 404-410. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 16543414.
17. Yamada S, Suzuki Y, Suzuki T, Le MQ, Nidom CA, et al. (2006) Haemagglutinin mutations responsible for the binding of H5N1 influenza A viruses to human-type receptors. Nature 444: 378-382. Available: http://dx.doi.org/10. 1038/nature05264. Accessed 2013 March 4.
18. Pan K, Deem MW (2011) Quantifying selection and diversity in viruses by entropy methods, with application to the haemagglutinin of H3N2 influenza. J R Soc Interface 8: 1644-1653. Available: http://rsif.royalsocietypublishing.org/ content/8/64/1644.short. Accessed 2013 May 6.
19. Dang CC, Le QS, Gascuel O, Le VS (2010) FLU, an amino acid substitution model for influenza proteins. BMC Evol Biol 10: 99. Available: http://www.biomedcentral.com/1471-2148/10/99. Accessed 2013 May 6.
20. Arafa A, Suarez D, Kholosy SG, Hassan MK, Nasef S, et al. (2012) Evolution of highly pathogenic avian influenza H5N1 viruses in Egypt indicating progressive adaptation. Arch Virol 157: 1931-1947. Available: http://www.ncbi.nlm.nih.gov/pubmed/22760662. Accessed 2013 May 30.
21. Abdelwhab EM, Arafa A-S, Stech J, Grund C, Stech O, et al. (2012) Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011. Virus Genes 45: 14-23. Available: http://www.ncbi.nlm.nih. gov/pubmed/22669540. Accessed 2013 May 6.
22. Watanabe Y, Ibrahim MS, Ellakany HF, Kawashita N, Mizuike R, et al. (2011) Acquisition of human-type receptor binding specificity by new H5N1 influenza virus sublineages during their emergence in birds in Egypt. PLoS Pathog 7: e1002068. Available: http://dx.plos.org/10.1371/journal.ppat.1002068. Accessed 2013 April 23.
23. Terregino C, Toffan A, Cilloni F, Monne I, Bertoli E, et al. (2010) Evaluation of the protection induced by avian influenza vaccines containing a 1994 Mexican H5N2 LPAI seed strain against a 2008 Egyptian H5N1 HPAI virus belonging to clade 2.2.1 by means of serological and in vivo tests. Avian Pathol 39: 215-222. Available: http://dx.doi.org/10.1080/03079451003781858. Accessed 2013 June 16.
24. Hensley SE, Das SR, Bailey AL, Schmidt LM, Hickman HD, et al. (2009) Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift. Science (80-) 326: 734-736. Available: http://www.pubmedcentral.nih.gov/ articlerender.fcgi?artid=2784927&tool=pmcentrez&rendertype=abstract.
25. Das SR, Hensley SE, David A, Schmidt L, Gibbs JS, et al. (2011) Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy. Proc Natl Acad Sci U S A 108: E1417-22. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3251056&tool= pmcentrez&rendertype=abstract.
26. Jones E, Oliphant T, Peterson P (2001) SciPy: Open source scientific tools for Python. http://www.scipy.org/. Available: http://www.citeulike.org/ group/2018/article/2644428. Accessed 2013 May 7.
27. Vijaykrishna D, Bahl J, Riley S, Duan L, Zhang JX, et al. (2008) Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses. PLoS Pathog 4: e1000161. Available: http://dx.plos.org/10.1371/journal.ppat.1000161. Accessed 2013 March 3.
28. Guindon S, Gascuel O (2003) A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. Syst Biol 52: 696-704. Available: http://sysbio.oxfordjournals.org/content/52/5/696.short. Accessed 2013 February 28.