Old obstacles and new horizons for microbial chemical production

Current Opinion in Biotechnology

Volumn 30, Issue , 2014, Pages 101-106

  Porro, Danilo ^a   Branduardi, Paola ^a   Sauer, Michael ^b,c   Mattanovich, Diethard ^b,c  

^a UNIVERSITY OF MILANO BICOCCA   (Italy)

^b UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^c AUSTRIAN CENTRE OF INDUSTRIAL BIOTECHNOLOGY   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

METABOLISM; MICROORGANISMS;

BIOTECHNOLOGY INDUSTRY; CHEMICAL BALANCE; CHEMICAL CONVERSIONS; CHEMICAL PRODUCTION; MICROBIAL CELL FACTORIES; SCIENTIFIC PAPERS; SYNTHETIC BIOLOGY; SYNTHETIC CHEMISTRY;

INDICATORS (CHEMICAL);

ORGANIC COMPOUND; POLYMER; 1,3 PROPANEDIOL; ALCOHOL; BUTANEDIOL; CITRIC ACID; GLUTAMIC ACID; ISOPENTENYL DIPHOSPHATE; LACTIC ACID; MONOMER; SUCCINIC ACID;

BACTERIAL STRAIN; BIOTECHNOLOGICAL PRODUCTION; ENERGY BALANCE; METABOLIC ENGINEERING; NONHUMAN; OXIDATION REDUCTION STATE; PRIORITY JOURNAL; REVIEW; STOICHIOMETRY; SYNTHETIC BIOLOGY; THERMODYNAMICS; BACTERIUM; BIOTECHNOLOGY; CLASSIFICATION; FUNGUS; METABOLISM; MICROBIOLOGY; BIOENGINEERING; CHEMICAL STRUCTURE; MICROBIAL GROWTH; MICROBIAL METABOLISM; OXIDATION REDUCTION REACTION;

BACTERIA; BIOTECHNOLOGY; FUNGI; INDUSTRIAL MICROBIOLOGY; METABOLIC NETWORKS AND PATHWAYS; POLYMERS; SYNTHETIC BIOLOGY;

EID: 84903753746     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2014.06.009     Document Type: Review

References (36)

1. Berovic M., Legisa M. Citric acid production. Biotechnol Annu Rev 2007, 13:303-343.
2. Sauer M., Porro D., Mattanovich D., Branduardi P. Microbial production of organic acid: expanding the markets. Trends Biotechnol 2008, 26:100-108.
3. Chen Y., Nielsen J. Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks. Curr Opin Biotechnol 2013, 24:965-972.
4. Du J., Shao Z., Zhao H. Engineering microbial factories for synthesis of value-added products. J Ind Microbiol Biotechnol 2011, 38:873-890.
5. Lee J.W., Kim H.U., Choi S., Yi J., Lee S.Y. Microbial production of building block chemicals and polymers. Curr Opin Biotechnol 2011, 22:758-767.
6. Van Dien S. From the first drop to the first truckload: commercialization of microbial processes for renewable chemicals. Curr Opin Biotechnol 2013, 24:1061.
7. Bailey J.E. Toward a science of metabolic engineering. Science 1991, 252:1668-1675.
8. Karaffa L., Kubicek C.P. Aspergillus niger citric acid accumulation: do we understand this well working black box?. Appl Microbiol Biotechnol 2003, 61:189-196.
9. Nielsen J., Larsson C., van Maris A., Pronk J. Metabolic engineering of yeast for production of fuels and chemicals. Curr Opin Biotechnol 2013, 24:398-404.
10. Gourdon P., Lindley N.A. Metabolic analysis of glutamate production by Corynebacterium glutamicum. Metab Eng 1999, 1:224-231.
11. Nakamura C.E., Whited G.M. Metabolic engineering for the microbial production of 1,3-propanediol. Curr Opin Biotechnol 2003, 14:454-459.
12. Biebl H., Menzel K., Zeng A.P., Deckwer W.D. Microbial production of 1,3-propanediol. Appl Microbiol Biotechnol 1999, 52:289-297.
13. Pflugl S., Marx H., Mattanovich D., Sauer M. 1,3-Propanediol production from glycerol with Lactobacillus diolivorans. Bioresour Technol 2012, 119:133-140.
14. Okano K., Tanaka T., Ogino C., Fukuda H., Kondo A. Biotechnological production of enantiomeric pure lactic acid from renewable resources: recent achievements, perspectives, and limits. Appl Microbiol Biotechnol 2010, 85:413-423.
15. Sauer M., Porro D., Mattanovich D., Branduardi P. 16 years research on lactic acid production with yeast-ready for the market?. Biotechnol Genet Eng Rev 2010, 27:229-256.
16. Jantama K., Zhang X., Moore J.C., Shanmugam K.T., Svoronos S.A., Ingram L.O. Eliminating side products and increasing succinate yields in engineered strains of Escherichia coli C. Biotechnol Bioeng 2008, 101:881-893.
17. Zhang X., Jantama K., Moore J.C., Jarboe L.R., Shanmugam K.T., Ingram L.O. Metabolic evolution of energy-conserving pathways for succinate production in Escherichia coli. Proc Natl Acad Sci USA 2009, 106:20180-20185.
18. Novamont and Genomatica to Create Joint Venture for First Industrial Plant for BDO from Renewable Feedstocks 2014, http://www.novamont.com/default.asp?id=738&id_n=9413.
19. Chakrabarti A., Miskovic L., Soh K.C., Hatzimanikatis V. Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints. Biotechnol J 2013, 8:1043-1057.
20. Dugar D., Stephanopoulos G. Relative potential of biosynthetic pathways for biofuels and bio-based products. Nat Biotechnol 2011, 29:1074-1078.
21. Porro D., Bianchi M.M., Brambilla L., Menghini R., Bolzani D., Carrera V., Lievense J., Liu C.L., Ranzi B.M., Frontali L., Alberghina L. Replacement of a metabolic pathway for large-scale production of lactic acid from engineered yeasts. Appl Environ Microbiol 1999, 65:4211-4215.
22. Vickers C.E., Klein-Marcuschamer D., Krömer J.O. Examining the feasibility of bulk commodity production in Escherichia coli. Biotechnol Lett 2012, 34:585-596.
23. Ajikumar P.K., Xiao W.H., Tyo K.E., Wang Y., Simeon F., Leonard E., Mucha O., Phon T.H., Pfeifer B., Stephanopoulos G. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74.
24. Kubicek C.P. The role of the citric acid cycle in fungal organic acid fermentations. Biochem Soc Symp 1988, 54:113-126.
25. García J., Torres N. Mathematical modelling and assessment of the pH homeostasis mechanisms in Aspergillus niger while in citric acid producing conditions. J Theor Biol 2011, 282:23-35.
26. Kind S., Becker J., Wittmann C. Increased lysine production by flux coupling of the tricarboxylic acid cycle and the lysine biosynthetic pathway - metabolic engineering of the availability of succinyl-CoA in Corynebacterium glutamicum. Metab Eng 2013, 15:184-195.
27. Shen C.R., Lan E.I., Dekishima Y., Baez A., Cho K.M., Liao J.C. Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Appl Environ Microbiol 2011, 77:2905-2915.
28. Chen Y., Siewers V., Nielsen J. Profiling of cytosolic and peroxisomal acetyl-CoA metabolism in Saccharomyces cerevisiae. PLoS ONE 2012, 7:e42475.
29. Krivoruchko A., Serrano-Amatriain C., Chen Y., Siewers V., Nielsen J. Improving biobutanol production in engineered Saccharomyces cerevisiae by manipulation of acetyl-CoA metabolism. J Ind Microbiol Biotechnol 2013, 40:1051-1056.
30. Lanza A.M., Alper H.S. Using transcription machinery engineering to elicit complex cellular phenotypes. Methods Mol Biol 2012, 813:229-248.
31. González-Ramos D., van den Broek M., van Maris A.J., Pronk J.T., Daran J.M. Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation. Biotechnol Biofuels 2013, 6:48.
32. Koopman F., Wierckx N., Ruijssenaars H.J., de Winde J.H. Efficient whole-cell biotransformation of 5-(hydroxymethyl)furfural into FDCA, 2,5-furandicarboxylic acid. Bioresour Technol 2010, 101:6291-6296.
33. Cheng K.K., Wang G.Y., Zeng J., Zhang J.A. Improved succinate production by metabolic engineering. Biomed Res Int 2013, 2013:538790.
34. Chemical industry awaits for bio-succinic acid potential 2014, http://www.icis.com/resources/news/2012/01/30/521/chemical-industry-awaits-for-bio-succinic-acid-potential/9527.
35. Kind S., Jeong W.K., Schröder H., Wittmann C. Systems-wide metabolic pathway engineering in Corynebacterium glutamicum for bio-based production of diaminopentane. Metab Eng 2010, 12:341-351.
36. Kind S., Wittmann C. Bio-based production of the platform chemical 1,5-diaminopentane. Appl Microbiol Biotechnol 2011, 91:1287-1296.