메뉴 건너뛰기




Volumn 813, Issue , 2012, Pages 229-248

Using transcription machinery engineering to elicit complex cellular phenotypes

Author keywords

Complex phenotype; Engineered phenotype; gTME; Metabolic engineering; Sigma factor; TATA binding protein; Transcription machinery

Indexed keywords

ALCOHOL;

EID: 82355181990     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-412-4_14     Document Type: Article
Times cited : (8)

References (29)
  • 1
    • 5044237367 scopus 로고    scopus 로고
    • Exploiting biological complexity for strain improvement through systems biology
    • DOI 10.1038/nbt1016
    • Stephanopoulos, G., Alper, H., and Moxley, J. (2004) Exploiting biological complexity for strain improvement through systems biology, Nat Biotechnol 22, 1261-1267. (Pubitemid 39336779)
    • (2004) Nature Biotechnology , vol.22 , Issue.10 , pp. 1261-1267
    • Stephanopoulos, G.1    Alper, H.2    Moxley, J.3
  • 2
    • 33847073370 scopus 로고    scopus 로고
    • Expanding the metabolic engineering toolbox: more options to engineer cells
    • DOI 10.1016/j.tibtech.2007.01.003, PII S0167779907000194
    • Tyo, K. E., Alper, H. S., and Stephanopoulos, G. N. (2007) Expanding the metabolic engineering toolbox: more options to engineer cells, Trends Biotechnol 25, 132-137. (Pubitemid 46273753)
    • (2007) Trends in Biotechnology , vol.25 , Issue.3 , pp. 132-137
    • Tyo, K.E.1    Alper, H.S.2    Stephanopoulos, G.N.3
  • 3
    • 0033797405 scopus 로고    scopus 로고
    • Improvement of microbial strains and fermentation processes
    • Parekh, S., Vinci, V. A., and Strobel, R. J. (2000) Improvement of microbial strains and fermentation processes, Appl Microbiol Biotechnol 54, 287-301.
    • (2000) Appl Microbiol Biotechnol , vol.54 , pp. 287-301
    • Parekh, S.1    Vinci, V.A.2    Strobel, R.J.3
  • 4
    • 38949178112 scopus 로고    scopus 로고
    • Engineering complex phenotypes in industrial strains
    • DOI 10.1021/bp0701214
    • Patnaik, R. (2008) Engineering complex phenotypes in industrial strains, Biotechnol Prog 24, 38-47. (Pubitemid 351231248)
    • (2008) Biotechnology Progress , vol.24 , Issue.1 , pp. 38-47
    • Patnaik, R.1
  • 5
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • DOI 10.1126/science.1131969
    • Alper, H., Moxley, J., Nevoigt, E., Fink, G. R., and Stephanopoulos, G. (2006) Engineering yeast transcription machinery for improved ethanol tolerance and production, Science 314, 1565-1568. (Pubitemid 44907143)
    • (2006) Science , vol.314 , Issue.5805 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 6
    • 33847083318 scopus 로고    scopus 로고
    • Global transcription machinery engineering: A new approach for improving cellular phenotype
    • DOI 10.1016/j.ymben.2006.12.002, PII S1096717606001248
    • Alper, H., and Stephanopoulos, G. (2007) Global transcription machinery engineering: A new approach for improving cellular phenotype, Metabolic Engineering 9, 258-267. (Pubitemid 46809525)
    • (2007) Metabolic Engineering , vol.9 , Issue.3 , pp. 258-267
    • Alper, H.1    Stephanopoulos, G.2
  • 7
    • 77949311534 scopus 로고    scopus 로고
    • GTME for improved xylose fermentation of Saccharomyces cerevisiae
    • Liu, H., Yan, M., Lai, C., Xu, L., and Ouyang, P. (2010) gTME for improved xylose fermentation of Saccharomyces cerevisiae, Appl Biochem Biotechnol 160, 574-582.
    • (2010) Appl Biochem Biotechnol , vol.160 , pp. 574-582
    • Liu, H.1    Yan, M.2    Lai, C.3    Xu, L.4    Ouyang, P.5
  • 10
    • 57049153236 scopus 로고    scopus 로고
    • Parallel mapping of genotypes to phenotypes contributing to overall biological fitness
    • Gall, S., Lynch, M. D., Sandoval, N. R., and Gill, R. T. (2008) Parallel mapping of genotypes to phenotypes contributing to overall biological fitness, Metab Eng 10, 382-393.
    • (2008) Metab Eng , vol.10 , pp. 382-393
    • Gall, S.1    Lynch, M.D.2    Sandoval, N.R.3    Gill, R.T.4
  • 11
    • 44949106193 scopus 로고    scopus 로고
    • A genomics approach to improve the analysis and design of strain selections
    • Warnecke, T. E., Lynch, M. D., Karimpour-Fard, A., Sandoval, N., and Gill, R. T. (2008) A genomics approach to improve the analysis and design of strain selections, Metab Eng 10, 154-165.
    • (2008) Metab Eng , vol.10 , pp. 154-165
    • Warnecke, T.E.1    Lynch, M.D.2    Karimpour-Fard, A.3    Sandoval, N.4    Gill, R.T.5
  • 12
    • 34547109364 scopus 로고    scopus 로고
    • Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli
    • DOI 10.1016/j.ymben.2007.03.003, PII S109671760700016X
    • Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli, Metab Eng 9, 337-347. (Pubitemid 47102684)
    • (2007) Metabolic Engineering , vol.9 , Issue.4 , pp. 337-347
    • Jin, Y.-S.1    Stephanopoulos, G.2
  • 14
    • 0031780756 scopus 로고    scopus 로고
    • Identification of genes affecting lycopene formation in Escherichia coli transformed with carotenoid biosynthetic genes: Candidates for early genes in isoprenoid biosynthesis
    • Hemmi, H., Ohnuma, S., Nagaoka, K., and Nishino, T. (1998) Identification of genes affecting lycopene formation in Escherichia coli transformed with carotenoid biosynthetic genes: candidates for early genes in isoprenoid biosynthesis, J Biochem 123, 1088-1096. (Pubitemid 28305991)
    • (1998) Journal of Biochemistry , vol.123 , Issue.6 , pp. 1088-1096
    • Hemmi, H.1    Ohnuma, S.-I.2    Nagaoka, K.3    Nishino, T.4
  • 15
    • 22844452835 scopus 로고    scopus 로고
    • Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets
    • DOI 10.1038/nbt1083
    • Alper, H., Miyaoku, K., and Stephanopoulos, G. (2005) Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets, Nat Biotechnol 23, 612-616. (Pubitemid 41724901)
    • (2005) Nature Biotechnology , vol.23 , Issue.5 , pp. 612-616
    • Alper, H.1    Miyaoku, K.2    Stephanopoulos, G.3
  • 16
    • 12244283724 scopus 로고    scopus 로고
    • Phenotypic screening of Eschenchia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays
    • DOI 10.1128/AEM.71.1.451-459.2005
    • Winterberg, K. M., Luecke, J., Bruegl, A. S., and Reznikoff, W. S. (2005) Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays, Appl Environ Microbiol 71, 451-459. (Pubitemid 40116301)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.1 , pp. 451-459
    • Winterberg, K.M.1    Luecke, J.2    Bruegl, A.S.3    Reznikoff, W.S.4
  • 19
    • 34147150291 scopus 로고    scopus 로고
    • Genome-shuffling improved acid tolerance and l-lactic acid volumetric productivity in Lactobacillus rhamnosus
    • DOI 10.1016/j.jbiotec.2007.01.011, PII S0168165607000922
    • Wang, Y., Li, Y., Pei, X., Yu, L., and Feng, Y. (2007) Genome-shuffl ing improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus, J Biotechnol 129, 510-515. (Pubitemid 46560156)
    • (2007) Journal of Biotechnology , vol.129 , Issue.3 , pp. 510-515
    • Wang, Y.1    Li, Y.2    Pei, X.3    Yu, L.4    Feng, Y.5
  • 20
    • 33845948161 scopus 로고    scopus 로고
    • SCALEs: Multiscale analysis of library enrichment
    • DOI 10.1038/nmeth946, PII NMETH946
    • Lynch, M. D., Warnecke, T., and Gill, R. T. (2007) SCALEs: multiscale analysis of library enrichment, Nat Methods 4, 87-93. (Pubitemid 46029481)
    • (2007) Nature Methods , vol.4 , Issue.1 , pp. 87-93
    • Lynch, M.D.1    Warnecke, T.2    Gill, R.T.3
  • 21
    • 77955459156 scopus 로고    scopus 로고
    • Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
    • Warner, J. R., Reeder, P. J., Karimpour-Fard, A., Woodruff, L. B., and Gill, R. T.(2010) Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides, Nat Biotechnol 28 8:856-862.
    • (2010) Nat Biotechnol , vol.28 , Issue.8 , pp. 856-862
    • Warner, J.R.1    Reeder, P.J.2    Karimpour-Fard, A.3    Woodruff, L.B.4    Gill, R.T.5
  • 22
    • 34250639490 scopus 로고    scopus 로고
    • Metagenomics, biotechnology with non-culturable microbes
    • DOI 10.1007/s00253-007-0945-5
    • Schmeisser, C., Steele, H., and Streit, W. R. (2007) Metagenomics, biotechnology with non-culturable microbes, Appl Microbiol Biotechnol 75, 955-962. (Pubitemid 46944554)
    • (2007) Applied Microbiology and Biotechnology , vol.75 , Issue.5 , pp. 955-962
    • Schmeisser, C.1    Steele, H.2    Streit, W.R.3
  • 23
    • 65549147541 scopus 로고    scopus 로고
    • Mutagenesis of the bacterial RNA polymerase alpha subunit for improvement of complex phenotypes
    • Klein-Marcuschamer, D., Santos, C. N., Yu, H., and Stephanopoulos, G. (2009) Mutagenesis of the bacterial RNA polymerase alpha subunit for improvement of complex phenotypes, Appl Environ Microbiol 75, 2705-2711.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2705-2711
    • Klein-Marcuschamer, D.1    Santos, C.N.2    Yu, H.3    Stephanopoulos, G.4
  • 24
    • 55549129643 scopus 로고    scopus 로고
    • A highthroughput screen for hyaluronic acid accumulation in recombinant Escherichia coli transformed by libraries of engineered sigma factors
    • Yu, H., Tyo, K., Alper, H., Klein-Marcuschamer, D., and Stephanopoulos, G. (2008) A highthroughput screen for hyaluronic acid accumulation in recombinant Escherichia coli transformed by libraries of engineered sigma factors, Biotechnol Bioeng 101, 788-796.
    • (2008) Biotechnol Bioeng , vol.101 , pp. 788-796
    • Yu, H.1    Tyo, K.2    Alper, H.3    Klein-Marcuschamer, D.4    Stephanopoulos, G.5
  • 26
    • 0029869449 scopus 로고    scopus 로고
    • An approach to random mutagenesis of DNA using mixtures of triphosphate derivatives of nucleoside analogues
    • DOI 10.1006/jmbi.1996.0049
    • Zaccolo, M., Williams, D. M., Brown, D. M., and Gherardi, E. (1996) An approach to random mutagenesis of DNA using mixtures of triphosphate derivatives of nucleoside analogues, J Mol Biol 255, 589-603. (Pubitemid 26107188)
    • (1996) Journal of Molecular Biology , vol.255 , Issue.4 , pp. 589-603
    • Zaccolo, M.1    Williams, D.M.2    Brown, D.M.3    Gherardi, E.4
  • 27
    • 85045502002 scopus 로고
    • Randomization of genes by PCR mutagenesis
    • Cadwell, R. C., and Joyce, G. F. (1992) Randomization of genes by PCR mutagenesis, PCR Methods Appl 2, 28-33.
    • (1992) PCR Methods Appl , vol.2 , pp. 28-33
    • Cadwell, R.C.1    Joyce, G.F.2
  • 29
    • 62649130286 scopus 로고    scopus 로고
    • Cloning and characterization of uronate dehydrogenases from two pseudomonads and Agrobacterium tumefaciens strain C58
    • Yoon, S. H., Moon, T. S., Iranpour, P., Lanza, A. M., and Prather, K. J. (2009) Cloning and characterization of uronate dehydrogenases from two pseudomonads and Agrobacterium tumefaciens strain C58, J Bacteriol 191, 1565-1573.
    • (2009) J Bacteriol , vol.191 , pp. 1565-1573
    • Yoon, S.H.1    Moon, T.S.2    Iranpour, P.3    Lanza, A.M.4    Prather, K.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.