Erratum: Miz-1 activates gene expression via a novel consensus DNA binding motif (PLoS ONE (2014) 9: 7 (e101151) DOI: 10.1371/journal.pone.0101151);Miz-1 activates gene expression via a novel consensus DNA binding motif

PLoS ONE

Volumn 9, Issue 7, 2014, Pages

  Barrilleaux, Bonnie L ^a,b,c,d   Burow, Dana ^a,b,c,d   Lockwood, Sarah H ^b   Yu, Abigail ^b   Segal, David J ^b   Knoepfler, Paul S ^a,b,c,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d SHRINERS HOSPITALS FOR CHILDREN NORTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN MIZM1; PROTEIN MIZM2; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; DNA; LUCIFERASE; MIZU-KUSSEI1 PROTEIN, ARABIDOPSIS;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CELL FATE; CELL TYPE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA BINDING MOTIF; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION; HIGH THROUGHPUT SCREENING; IN VITRO STUDY; NONHUMAN; PROMOTER REGION; PROTEIN BINDING; TRANSCRIPTION INITIATION SITE; ZINC FINGER MOTIF; BINDING SITE; GENE EXPRESSION REGULATION; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METABOLISM; PHYSIOLOGY; REPORTER GENE;

ARABIDOPSIS PROTEINS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; DNA; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION; GENES, REPORTER; HUMANS; LUCIFERASES;

EID: 84903722318     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.010856     Document Type: Erratum

References (31)

1. Peukert K, Staller P, Schneider A, Carmichael G, Hänel F, et al. (1997) An alternative pathway for gene regulation by Myc. EMBO J 16: 5672-5686. (Pubitemid 27399859)
2. Gebhardt A, Kosan C, Herkert B, Möröy T, Lutz W, et al. (2007) Miz1 is required for hair follicle structure and hair morphogenesis. J Cell Sci 120: 2586-2593. (Pubitemid 47323867)
3. Adhikary S, Peukert K (2003) Miz1 Is Required for Early Embryonic Development during Gastrulation. Mol Cell Biol 23: 7648-7657. (Pubitemid 37271463)
4. Kosan C, Saba I, Godmann M, Herold S, Herkert B, et al. (2010) Transcription factor miz-1 is required to regulate interleukin-7 receptor signaling at early commitment stages of B cell differentiation. Immunity 33: 917-928.
5. Do-Umehara HC, Chen C, Urich D, Zhou L, Qiu J, et al. (2013) Suppression of inflammation and acute lung injury by Miz1 via repression of C/EBP-delta. Nat Immunol 14: 461-469.
6. Ikegaki N, Gotoh T, Kung B, Riceberg JS, Kim DY, et al. (2007) De novo identification of MIZ-1 (ZBTB17) encoding a MYC-interacting zinc-finger protein as a new favorable neuroblastoma gene. Clin Cancer Res 13: 6001-6009. (Pubitemid 350075055)
7. Staller P, Peukert K, Kiermaier A, Seoane J, Lukas J, et al. (2001) Repression of p15INK4b expression by Myc through association with Miz-1. Nat Cell Biol 3: 392-399. (Pubitemid 32288447)
8. Wu S, Cetinkaya C, Munoz-Alonso MJ, von der Lehr N, Bahram F, et al. (2003) Myc represses differentiation-induced p21CIP1 expression via Miz-1-dependent interaction with the p21 core promoter. Oncogene 22: 351-360. (Pubitemid 36194331)
9. Varlakhanova N, Cotterman R, Bradnam K, Korf I, Knoepfler PS (2011) Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells. Epigenetics Chromatin 4: 20.
10. Wanzel M, Herold S, Eilers M (2003) Transcriptional repression by Myc. Trends Cell Biol 13: 146-150. (Pubitemid 36293787)
11. Wanzel M, Russ AC, Kleine-Kohlbrecher D, Colombo E, Pelicci PG, et al. (2008) A ribosomal protein L23-nucleophosmin circuit coordinates Mizl function with cell growth. Nat Cell Biol 10: 1051-1061.
12. Seoane J, Pouponnot C, Staller P, Schader M, Eilers M, et al. (2001) TGFbeta influences Myc, Miz-1 and Smad to control the CDK inhibitor p15INK4b. Nat Cell Biol 3: 400-408. (Pubitemid 32288448)
13. Kime L, Wright SC (2003) Mad4 is regulated by a transcriptional repressor complex that contains Miz-1 and c-Myc. Biochem J 370: 291-298. (Pubitemid 36259442)
14. Si J, Yu X, Zhang Y, DeWille JW (2010) Myc interacts with Max and Miz1 to repress C/EBPdelta promoter activity and gene expression. Mol Cancer 9: 92.
15. Wolf E, Gebhardt A, Kawauchi D, Walz S, von Eyss B, et al. (2013) Miz1 is required to maintain autophagic flux. Nat Commun 4: 2535.
16. Zykovich A, Korf I, Segal DJ (2009) Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing. Nucleic Acids Res 37: e151.
17. Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS (2007) Quantifying similarity between motifs. Genome Biology 8: R24.
18. Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, et al. (2013) DNA-binding specificities of human transcription factors. Cell 152: 327-339.
19. Stead MA, Trinh CH, Garnett JA, Carr SB, Baron AJ, et al. (2007) A beta-sheet interaction interface directs the tetramerisation of the Miz-1 POZ domain. J Mol Biol 373: 820-826. (Pubitemid 47498438)
20. Stogios PJ, Cuesta-Seijo JA, Chen L, Pomroy NC, Prive GG (2010) Insights into strand exchange in BTB domain dimers from the crystal structures of FAZF and Miz1. J Mol Biol 400: 983-997.
21. Moon NS, Premdas P, Truscott M, Bérubé G, Nepveu A, et al. (2001) S Phase-Specific Proteolytic Cleavage Is Required To Activate Stable DNA Binding by the CDP/Cut Homeodomain Protein S Phase-Specific Proteolytic Cleavage Is Required To Activate Stable DNA Binding by the CDP/Cut Homeodomain Protein. Mol Cell Biol 21: 6332-6345. (Pubitemid 34263531)
22. Truscott M, Raynal L, Wang Y, Berube G, Leduy L, et al. (2004) The Nterminal region of the CCAAT displacement protein (CDP)/Cux transcription factor functions as an autoinhibitory domain that modulates DNA binding. J Biol Chem 279: 49787-49794. (Pubitemid 39577784)
23. Truscott M, Harada R, Vadnais C, Robert F, Nepveu A (2008) p110 CUX1 cooperates with E2F transcription factors in the transcriptional activation of cell cycle-regulated genes. Mol Cell Biol 28: 3127-3138. (Pubitemid 351657079)
24. Bernard D, Bedard M, Bilodeau J, Lavigne P (2013) Structural and dynamical characterization of the Miz-1 zinc fingers 5-8 by solution-state NMR. J Biomol NMR 57: 103-116.
25. Bedard M, Maltais L, Beaulieu ME, Bilodeau J, Bernard D, et al. (2012) NMR structure note: solution structure of human Miz-1 zinc fingers 8 to 10. J Biomol NMR 54: 317-323.
26. Brayer KJ, Segal DJ (2008) Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochem Biophys 50: 111-131.
27. Brown RS (2005) Zinc finger proteins: getting a grip on RNA. Curr Opin Struct Biol 15: 94-98.
28. Seoane J, Le HV, Massague J (2002) Myc suppression of the p21(Cip1) Cdk inhibitor influences the outcome of the p53 response to DNA damage. Nature 419: 729-734. (Pubitemid 35177959)
29. Akter J, Takatori A, Hossain MS, Ozaki T, Nakazawa A, et al. (2011) Expression of NLRR3 orphan receptor gene is negatively regulated by MYCN and Miz-1, and its downregulation is associated with unfavorable outcome in neuroblastoma. Clin Cancer Res 17: 6681-6692.
30. Eisenman RN (2001) Deconstructing myc. Genes Dev 15: 2023-2030.
31. Iraci N, Diolaiti D, Papa A, Porro A, Valli E, et al. (2011) A SP1/MIZ1/MYCN repression complex recruits HDAC1 at the TRKA and p75NTR promoters and affects neuroblastoma malignancy by inhibiting the cell response to NGF. Cancer Res 71: 404-412.