-
1
-
-
22744447508
-
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
-
DOI 10.1016/j.cell.2005.05.028, PII S0092867405005441
-
Kerner, M.J. et al. Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 122, 209-220 (2005). (Pubitemid 41032985)
-
(2005)
Cell
, vol.122
, Issue.2
, pp. 209-220
-
-
Kerner, M.J.1
Naylor, D.J.2
Ishihama, Y.3
Maier, T.4
Chang, H.-C.5
Stines, A.P.6
Georgopoulos, C.7
Frishman, D.8
Hayer-Hartl, M.9
Mann, M.10
Hartl, F.U.11
-
3
-
-
71149120194
-
Optimizing protein stability in vivo
-
Foit, L. et al. Optimizing protein stability in vivo. Mol. Cell 36, 861-871 (2009).
-
(2009)
Mol. Cell
, vol.36
, pp. 861-871
-
-
Foit, L.1
-
5
-
-
77954368284
-
Antibiotic resistance by enzyme inactivation: From mechanisms to solutions
-
De Pascale, G. & Wright, G.D. Antibiotic resistance by enzyme inactivation: from mechanisms to solutions. ChemBioChem 11, 1325-1334 (2010).
-
(2010)
ChemBioChem
, vol.11
, pp. 1325-1334
-
-
De Pascale, G.1
Wright, G.D.2
-
6
-
-
4143080376
-
Trapping the on-pathway folding intermediate of Im7 at equilibrium
-
DOI 10.1016/j.jmb.2004.05.049, PII S0022283604006291
-
Spence, G.R., Capaldi, A.P. & Radford, S.E. Trapping the on-pathway folding intermediate of Im7 at equilibrium. J. Mol. Biol. 341, 215-226 (2004). (Pubitemid 39090646)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.1
, pp. 215-226
-
-
Spence, G.R.1
Capaldi, A.P.2
Radford, S.E.3
-
7
-
-
0036033555
-
A third envelope stress signal transduction pathway in Escherichia coli
-
DOI 10.1046/j.1365-2958.2002.03112.x
-
Raffa, R.G. & Raivio, T.L. A third envelope stress signal transduction pathway in Escherichia coli. Mol. Microbiol. 45, 1599-1611 (2002). (Pubitemid 35231977)
-
(2002)
Molecular Microbiology
, vol.45
, Issue.6
, pp. 1599-1611
-
-
Raffa, R.G.1
Raivio, T.L.2
-
8
-
-
55949113873
-
Two-component signaling and gram negative envelope stress response systems
-
MacRitchie, D.M., Buelow, D.R., Price, N.L. & Raivio, T.L. Two-component signaling and gram negative envelope stress response systems. Adv. Exp. Med. Biol. 631, 80-110 (2008).
-
(2008)
Adv. Exp. Med. Biol.
, vol.631
, pp. 80-110
-
-
MacRitchie, D.M.1
Buelow, D.R.2
Price, N.L.3
Raivio, T.L.4
-
9
-
-
70349664195
-
Global analysis of extracytoplasmic stress signaling in Escherichia coli
-
Bury-Moné, S. et al. Global analysis of extracytoplasmic stress signaling in Escherichia coli. PLoS Genet. 5, e1000651 (2009).
-
(2009)
PLoS Genet.
, vol.5
-
-
Bury-Moné, S.1
-
10
-
-
63049096052
-
Characterization of the Cpx regulon in Escherichia coli strain MC4100
-
Price, N.L. & Raivio, T.L. Characterization of the Cpx regulon in Escherichia coli strain MC4100. J. Bacteriol. 191, 1798-1815 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1798-1815
-
-
Price, N.L.1
Raivio, T.L.2
-
11
-
-
0033812832
-
Tethering of CpxP to the inner membrane prevents spheroplast induction of the cpx envelope stress response
-
Raivio, T.L., Laird, M.W., Joly, J.C. & Silhavy, T.J. Tethering of CpxP to the inner membrane prevents spheroplast induction of the cpx envelope stress response. Mol. Microbiol. 37, 1186-1197 (2000).
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1186-1197
-
-
Raivio, T.L.1
Laird, M.W.2
Joly, J.C.3
Silhavy, T.J.4
-
12
-
-
66849143696
-
Converging concepts of protein folding in vitro and in vivo
-
Hartl, F.U. & Hayer-Hartl, M. Converging concepts of protein folding in vitro and in vivo. Nat. Struct. Mol. Biol. 16, 574-581 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 574-581
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
13
-
-
11444262208
-
Beyond transcription - New mechanisms for the regulation of molecular chaperones
-
DOI 10.1080/10409230490900658
-
Winter, J. & Jakob, U. Beyond transcription-new mechanisms for the regulation of molecular chaperones. Crit. Rev. Biochem. Mol. Biol. 39, 297-317 (2004). (Pubitemid 40082763)
-
(2004)
Critical Reviews in Biochemistry and Molecular Biology
, vol.39
, Issue.5-6
, pp. 297-317
-
-
Winter, J.1
Jakob, U.2
-
14
-
-
38349191927
-
The BaeSR two-component regulatory system mediates resistance to condensed tannins in Escherichia coli
-
Zoetendal, E.G., Smith, A.H., Sundset, M.A. & Mackie, R.I. The BaeSR two-component regulatory system mediates resistance to condensed tannins in Escherichia coli. Appl. Environ. Microbiol. 74, 535-539 (2008).
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 535-539
-
-
Zoetendal, E.G.1
Smith, A.H.2
Sundset, M.A.3
MacKie, R.I.4
-
15
-
-
31144447841
-
Antimicrobial properties of tannins
-
Scalbert, A. Antimicrobial properties of tannins. Phytochemistry 30, 3875-3883 (1991).
-
(1991)
Phytochemistry
, vol.30
, pp. 3875-3883
-
-
Scalbert, A.1
-
16
-
-
0034776423
-
Tannin diagenesis in mangrove leaves from a tropical estuary: A novel molecular approach
-
DOI 10.1016/S0016-7037(01)00641-X, PII S001670370100641X
-
Hernes, P.J. et al. Tannin diagenesis in mangrove leaves from a tropical estuary: A novel molecular approach. Geochim. Cosmochim. Acta 65, 3109-3122 (2001). (Pubitemid 32974569)
-
(2001)
Geochimica et Cosmochimica Acta
, vol.65
, Issue.18
, pp. 3109-3122
-
-
Hernes, P.J.1
Benner, R.2
Cowie, G.L.3
Goi, M.A.4
Bergamaschi, B.A.5
Hedges, J.I.6
-
17
-
-
2342474455
-
Effect of Condensed Tannins on Bacterial Diversity and Metabolic Activity in the Rat Gastrointestinal Tract
-
DOI 10.1128/AEM.70.2.1104-1115.2004
-
Smith, A.H. & Mackie, R.I. Effect of condensed tannins on bacterial diversity and metabolic activity in the rat gastrointestinal tract. Appl. Environ. Microbiol. 70, 1104-1115 (2004). (Pubitemid 38568237)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.2
, pp. 1104-1115
-
-
Smith, A.H.1
Mackie, R.I.2
-
18
-
-
70349983259
-
Tannins: Current knowledge of food sources, intake, bioavailability and biological effects
-
Serrano, J., Puupponen-Pimia, R., Dauer, A., Aura, A.M. & Saura-Calixto, F. Tannins: current knowledge of food sources, intake, bioavailability and biological effects. Mol. Nutr. Food Res. 53, S310-S329 (2009).
-
(2009)
Mol. Nutr. Food Res.
, vol.53
-
-
Serrano, J.1
Puupponen-Pimia, R.2
Dauer, A.3
Aura, A.M.4
Saura-Calixto, F.5
-
19
-
-
0032497537
-
Inhibition of the adherence of P-fimbriated Escherichia coli to uroepithelial-cell surfaces by proanthocyanidin extracts from cranberries [6]
-
DOI 10.1056/NEJM199810083391516
-
Howell, A.B., Vorsa, N., Marderosian, A.D. & Foo, L.Y. Inhibition of the adherence of P-fmbriated Escherichia coli to uroepithelial-cell surfaces by proanthocyanidin extracts from cranberries. N. Engl. J. Med. 339, 1085-1086 (1998). (Pubitemid 28457878)
-
(1998)
New England Journal of Medicine
, vol.339
, Issue.15
, pp. 1085-1086
-
-
Howell, A.B.1
Vorsa, N.2
Marderosian, A.D.3
Foo, L.Y.4
-
20
-
-
79051471546
-
Tannin-assisted aggregation of natively unfolded proteins
-
Zanchi, D. et al. Tannin-assisted aggregation of natively unfolded proteins. Europhys. Lett. 82, 58001 (2008).
-
(2008)
Europhys. Lett.
, vol.82
, pp. 58001
-
-
Zanchi, D.1
-
21
-
-
33846141470
-
Protein binding and astringent taste of a polymeric procyanidin, 1,2,3,4,6-penta-O-galloyl-β-D-glucopyranose, castalagin, and grandinin
-
DOI 10.1021/jf062272c
-
Hofmann, T. et al. Protein binding and astringent taste of a polymeric procyanidin, 1,2,3,4,6-penta-O-galloyl-beta-D-glucopyranose, castalagin, and grandinin. J. Agric. Food Chem. 54, 9503-9509 (2006). (Pubitemid 46086112)
-
(2006)
Journal of Agricultural and Food Chemistry
, vol.54
, Issue.25
, pp. 9503-9509
-
-
Hofmann, T.1
Glabasnia, A.2
Schwarz, B.3
Wisman, K.N.4
Gangwer, K.A.5
Hagerman, A.E.6
-
22
-
-
7044286419
-
Anti-amyloidogenic activity of tannic acid and its activity to destabilize Alzheimer's β-amyloid fibrils in vitro
-
DOI 10.1016/j.bbadis.2004.06.008, PII S0925443904001024
-
Ono, K., Hasegawa, K., Naiki, H. & Yamada, M. Anti-amyloidogenic activity of tannic acid and its activity to destabilize Alzheimer's β-amyloid fbrils in vitro. Biochim. Biophys. Acta 1690, 193-202 (2004). (Pubitemid 39423614)
-
(2004)
Biochimica et Biophysica Acta - Molecular Basis of Disease
, vol.1690
, Issue.3
, pp. 193-202
-
-
Ono, K.1
Hasegawa, K.2
Naiki, H.3
Yamada, M.4
-
23
-
-
33750449952
-
A high-throughput screen for compounds that inhibit aggregation of the Alzheimer's peptide
-
Kim, W. et al. A high-throughput screen for compounds that inhibit aggregation of the Alzheimer's peptide. ACS Chem. Biol. 1, 461-469 (2006).
-
(2006)
ACS Chem. Biol.
, vol.1
, pp. 461-469
-
-
Kim, W.1
-
24
-
-
59949099584
-
Discovery of amyloid-β aggregation inhibitors using an engineered assay for intracellular protein folding and solubility
-
Lee, L.L., Ha, H., Chang, Y.T. & DeLisa, M.P. Discovery of amyloid-β aggregation inhibitors using an engineered assay for intracellular protein folding and solubility. Protein Sci. 18, 277-286 (2009).
-
(2009)
Protein Sci.
, vol.18
, pp. 277-286
-
-
Lee, L.L.1
Ha, H.2
Chang, Y.T.3
Delisa, M.P.4
-
25
-
-
0032851357
-
The Cpx envelope stress response is controlled by amplification and feedback inhibition
-
Raivio, T.L., Popkin, D.L. & Silhavy, T.J. The Cpx envelope stress response is controlled by amplifcation and feedback inhibition. J. Bacteriol. 181, 5263-5272 (1999). (Pubitemid 29416345)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.17
, pp. 5263-5272
-
-
Raivio, T.L.1
Popkin, D.L.2
Silhavy, T.J.3
-
26
-
-
0031905590
-
CpxP, a stress-combative member of the Cpx regulon
-
Danese, P.N. & Silhavy, T.J. CpxP, a stress-combative member of the Cpx regulon. J. Bacteriol. 180, 831-839 (1998). (Pubitemid 28084207)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.4
, pp. 831-839
-
-
Danese, P.N.1
Silhavy, T.J.2
-
27
-
-
0037384456
-
Signal detection and target gene induction by the CpxRA two-component system
-
DOI 10.1128/JB.185.8.2432-2440.2003
-
DiGiuseppe, P.A. & Silhavy, T.J. Signal detection and target gene induction by the CpxRA two-component system. J. Bacteriol. 185, 2432-2440 (2003). (Pubitemid 36417966)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.8
, pp. 2432-2440
-
-
DiGiuseppe, P.A.1
Silhavy, T.J.2
-
28
-
-
29144519709
-
The extracytoplasmic adaptor protein CpxP is degraded with substrate by DegP
-
DOI 10.1073/pnas.0508936102
-
Isaac, D.D., Pinkner, J.S., Hultgren, S.J. & Silhavy, T.J. The extracytoplasmic adaptor protein CpxP is degraded with substrate by DegP. Proc. Natl. Acad. Sci. USA 102, 17775-17779 (2005). (Pubitemid 41803573)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.49
, pp. 17775-17779
-
-
Isaac, D.D.1
Pinkner, J.S.2
Hultgren, S.J.3
Silhavy, T.J.4
-
29
-
-
78349302644
-
The crystal structure Escherichia coli Spy
-
Kwon, E., Kim, D.Y., Gross, C.A., Gross, J.D. & Kim, K.K. The crystal structure Escherichia coli Spy. Protein Sci. 19, 2252-2259 (2010).
-
(2010)
Protein Sci.
, vol.19
, pp. 2252-2259
-
-
Kwon, E.1
Kim, D.Y.2
Gross, C.A.3
Gross, J.D.4
Kim, K.K.5
-
30
-
-
17144391476
-
Identification of the hydrophobic thickness of a membrane protein using fluorescence spectroscopy: Studies with the mechanosensitive channel MscL
-
DOI 10.1021/bi047338g
-
Powl, A.M., Wright, J.N., East, J.M. & Lee, A.G. Identifcation of the hydrophobic thickness of a membrane protein using fuorescence spectroscopy: Studies with the mechanosensitive channel MscL. Biochemistry 44, 5713-5721 (2005). (Pubitemid 40525107)
-
(2005)
Biochemistry
, vol.44
, Issue.15
, pp. 5713-5721
-
-
Powl, A.M.1
Wright, J.N.2
East, J.M.3
Lee, A.G.4
-
31
-
-
65249182171
-
Structural plasticity of an acid-activated chaperone allows promiscuous substrate binding
-
Tapley, T.L. et al. Structural plasticity of an acid-activated chaperone allows promiscuous substrate binding. Proc. Natl. Acad. Sci. USA 106, 5557-5562 (2009).
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5557-5562
-
-
Tapley, T.L.1
-
32
-
-
67650685558
-
An integrated network approach identifes the isobutanol response network of Escherichia coli
-
doi:10.1038/ msb.2009.34.
-
Brynildsen, M.P. & Liao, J.C. An integrated network approach identifes the isobutanol response network of Escherichia coli. Mol. Syst. Biol. 5, 277 (2009); doi:10.1038/ msb.2009.34.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 277
-
-
Brynildsen, M.P.1
Liao, J.C.2
-
33
-
-
77749245785
-
Functional genomic study of exogenous n-butanol stress in Escherichia coli
-
Rutherford, B.J. et al. Functional genomic study of exogenous n-butanol stress in Escherichia coli. Appl. Environ. Microbiol. 76, 1935-1945 (2010).
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1935-1945
-
-
Rutherford, B.J.1
-
34
-
-
78951478529
-
Thermodynamic analysis of alcohol effect on thermal stability of proteins
-
Miyawaki, O. & Tatsuno, M. Thermodynamic analysis of alcohol effect on thermal stability of proteins. J. Biosci. Bioeng. 111, 198-203 (2011).
-
(2011)
J. Biosci. Bioeng.
, vol.111
, pp. 198-203
-
-
Miyawaki, O.1
Tatsuno, M.2
-
35
-
-
0021693955
-
The genetics and regulation of heat-shock proteins
-
Neidhardt, F.C., VanBogelen, R.A. & Vaughn, V. The genetics and regulation of heat-shock proteins. Annu. Rev. Genet. 18, 295-329 (1984).
-
(1984)
Annu. Rev. Genet.
, vol.18
, pp. 295-329
-
-
Neidhardt, F.C.1
Vanbogelen, R.A.2
Vaughn, V.3
-
36
-
-
0019422421
-
Identity of the B56.5 protein, the A-protein, and the groE gene product of Escherichia coli
-
Neidhardt, F.C. et al. Identity of the B56.5 protein, the A-protein, and the groE gene product of Escherichia coli. J. Bacteriol. 145, 513-520 (1981). (Pubitemid 11140334)
-
(1981)
Journal of Bacteriology
, vol.145
, Issue.1
, pp. 513-520
-
-
Neidhardt, F.C.1
Phillips, T.A.2
VanBogelen, R.A.3
-
37
-
-
29544433937
-
Macromolecular crowding in the Escherichia coli periplasm maintains α-synuclein disorder
-
DOI 10.1016/j.jmb.2005.11.033, PII S0022283605014208
-
McNulty, B.C., Young, G.B. & Pielak, G.J. Macromolecular crowding in the Escherichia coli periplasm maintains α-synuclein disorder. J. Mol. Biol. 355, 893-897 (2006). (Pubitemid 43012748)
-
(2006)
Journal of Molecular Biology
, vol.355
, Issue.5
, pp. 893-897
-
-
McNulty, B.C.1
Young, G.B.2
Pielak, G.J.3
-
38
-
-
75749153007
-
Protein refolding by pH-triggered chaperone binding and release
-
Tapley, T.L., Franzmann, T.M., Chakraborty, S., Jakob, U. & Bardwell, J.C.A. Protein refolding by pH-triggered chaperone binding and release. Proc. Natl. Acad. Sci. USA 107, 1071-1076 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1071-1076
-
-
Tapley, T.L.1
Franzmann, T.M.2
Chakraborty, S.3
Jakob, U.4
Bardwell, J.C.A.5
-
40
-
-
1842477219
-
In Vivo Substrate Specificity of Periplasmic Disulfide Oxidoreductases
-
DOI 10.1074/jbc.M311391200
-
Hiniker, A. & Bardwell, J.C.A. In vivo substrate specifcity of periplasmic disulfde oxidoreductases. J. Biol. Chem. 279, 12967-12973 (2004). (Pubitemid 38445872)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.13
, pp. 12967-12973
-
-
Hiniker, A.1
Bardwell, J.C.A.2
-
41
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Meth. Enzymol. 276, 307-326 (1997). (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
42
-
-
36549027357
-
Automated structure solution with autoSHARP
-
DOI 10.1385/1-59745-266-1:215, Macromolecular Crystallography Protocols, Volume 2: Structure Determination
-
Vonrhein, C., Blanc, E., Roversi, P. & Bricogne, G. Automated structure solution with autoSHARP. Methods Mol. Biol. 364, 215-230 (2007). (Pubitemid 350183137)
-
(2007)
Methods in Molecular Biology
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
44
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
DOI 10.1107/S0907444996012255
-
Murshudov, G.N., Vagin, A.A. & Dodson, E.J. Refnement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255 (1997). (Pubitemid 27235885)
-
(1997)
Acta Crystallographica Section D: Biological Crystallography
, vol.53
, Issue.3
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
45
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P.D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
46
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V.B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
|