Evolution of TNF-induced apoptosis reveals 550 My of functional conservation

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 26, 2014, Pages 9567-9572

  Quistad, Steven D ^a   Stotland, Aleksandr ^a,b   Barott, Katie L ^a,c   Smurthwaite, Cameron A ^a   Hilton, Brett Jameson ^a   Grasis, Juris A ^a   Wolkowicz, Roland ^a   Rohwer, Forest L ^a  

^a SAN DIEGO STATE UNIVERSITY   (United States)

^b CEDARS SINAI MEDICAL CENTER   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Climate change; Cnidarians; Cytokines; Evolution immunity; Invertebrate immunity

Indexed keywords

DEATH RECEPTOR; FAS ASSOCIATED DEATH DOMAIN PROTEIN; MYOSIN; PROTEOME; TUMOR NECROSIS FACTOR; TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR; TUMOR NECROSIS FACTOR SUPERFAMILY; UNCLASSIFIED DRUG;

APOPTOSIS; ARTICLE; BIOINFORMATICS; BLEACHING; CORAL REEF; DEATH; JURKAT CELL LINE; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL;

CLIMATE CHANGE; CNIDARIANS; CYTOKINES; EVOLUTION IMMUNITY; INVERTEBRATE IMMUNITY;

ADAPTATION, BIOLOGICAL; ANIMALS; ANTHOZOA; APOPTOSIS; BIOLOGICAL EVOLUTION; CELLS, CULTURED; COMPUTATIONAL BIOLOGY; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FAS-ASSOCIATED DEATH DOMAIN PROTEIN; FLOW CYTOMETRY; GENE KNOCKOUT TECHNIQUES; HUMANS; IMMUNOHISTOCHEMISTRY; JURKAT CELLS; MICROSCOPY, FLUORESCENCE; RECEPTORS, DEATH DOMAIN; RECEPTORS, TUMOR NECROSIS FACTOR; SPECIES SPECIFICITY; TUMOR NECROSIS FACTOR-ALPHA;

EID: 84903707650     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1405912111     Document Type: Article

References (54)

1. Litman GW, Cooper MD (2007) Why study the evolution of immunity? Nat Immunol 8(6):547-548.
2. Putnam NH, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317(5834):86-94.
3. Daly M, et al. (2007) The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus. Zootaxa 1668:127-182.
4. Augustin R, Bosch TCG (2010) Cnidarian immunity: A tale of two barriers. Adv Exp Med Biol 708:1-16.
5. Bourne DG, et al. (2009) Microbial disease and the coral holobiont. Trends Microbiol 17(12):554-562.
6. Brown BE (1997) Coral bleaching: Causes and consequences. Coral Reefs 16-(Suppl):S129-S138.
7. Rosenberg E, Kushmaro A, Kramarsky-Winter E, Banin E, Yossi L (2009) The role of microorganisms in coral bleaching. ISME J 3(2):139-146.
8. LesserM(2011) Coral bleaching: Causes and mechanisms. Coral Reefs: An Ecosystem in Transition, eds Dubinsky Z, Stambler N (Springer, Houten, The Netherlands) , pp 405-419.
9. Davy SK, Allemand D, Weis VM (2012) Cell biology of cnidarian- dinoflagellate symbiosis. Microbiol Mol Biol Rev 76(2):229-261.
10. Dunn SR, Schnitzler CE, Weis VM (2007) Apoptosis and autophagy as mechanisms of dinoflagellate symbiont release during cnidarian bleaching: Every which way you lose. Proc Biol Sci 274(1629):3079-3085.
11. Zhou F, Yang Y, Xing D (2011) Bcl-2 and Bcl-xL play important roles in the crosstalk between autophagy and apoptosis. FEBS J 278(3):403-413.
12. Weis VM (2008) Cellular mechanisms of Cnidarian bleaching: Stress causes the collapse of symbiosis. J Exp Biol 211(Pt 19):3059-3066.
13. Shinzato C, et al. (2011) Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476(7360):320-323.
14. Bahia MS, Silakari O (2010) Tumor necrosis factor alpha converting enzyme: An encouraging target for various inflammatory disorders. Chem Biol Drug Des 75(5): 415-443.
15. Hymowitz SG, et al. (1999) Triggering cell death: The crystal structure of Apo2L/TRAIL in a complex with death receptor. Mol Cell 4(4):563-571
16. Lin Y, Devin A, Rodriguez Y, Liu ZG (1999) Cleavage of the death domain kinase RIP by caspase-8 prompts TNF-induced apoptosis. Genes Dev 13(19):2514-2526.
17. Micheau O, Tschopp J (2003) Induction of TNF receptor I-mediated apoptosis via two sequential signaling complexes. Cell 114(2):181-190.
18. Kauppila S, et al. (2003) Eiger and its receptor, Wengen, comprise a TNF-like system in Drosophila. Oncogene 22(31):4860-4867.
19. Moreno E, Yan M, Basler K (2002) Evolution of TNF signaling mechanisms: JNKdependent apoptosis triggered by Eiger, the Drosophila homolog of the TNF superfamily. Curr Biol 12(14):1263-1268.
20. Collette Y, Gilles A, Pontarotti P, Olive D (2003) A co-evolution perspective of the TNFSF and TNFRSF families in the immune system. Trends Immunol 24(7):387-394.
21. Wiens GD, Glenney GW (2011) Origin and evolution of TNF and TNF receptor superfamilies. Dev Comp Immunol 35(12):1324-1335.
22. Robertson AJ, et al. (2006) The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus. Dev Biol 300(1):321-334.
23. Pandolfi JM, et al. (2003) Global trajectories of the long-term decline of coral reef ecosystems. Science 301(5635):955-958.
24. Hajnóczky G, Davies E, Madesh M (2003) Calcium signaling and apoptosis. Biochem Biophys Res Commun 304(3):445-454.
25. Freeman ME, Kanyicska B, Lerant A, Nagy G (2000) Prolactin: Structure, function, and regulation of secretion. Physiol Rev 80(4):1523-1631.
26. Einhauer A, Jungbauer A (2001) The FLAGTM peptide, a versatile fusion tag for the purification of recombinant proteins. J Biochem Bioph Meth 49(1-3):455-465.
27. Sen CK, Sashwati R, Packer L (1999) Fas mediated apoptosis of human Jurkat T-cells: Intracellular events and potentiation by redox-active alpha-lipoic acid. Cell Death Differ 6(5):481-491.
28. Kusserow A, et al. (2005) Unexpected complexity of the Wnt gene family in a sea anemone. Nature 433(7022):156-160.
29. Desvignes T, Pontarotti P, Bobe J (2010) Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensis. PLoS ONE 5(11):e15506.
30. Beschin A, et al. (1999) Convergent evolution of cytokines. Nature 400(6745):627-628.
31. Beschin A, Bilej M, Torreele E, De Baetselier P (2001) On the existence of cytokines in invertebrates. Cell Mol Life Sci 58(5-6):801-814.
32. Scapigliati G, Buonocore F, Mazzini M (2006) Biological activity of cytokines: An evolutionary perspective. Curr Pharm Des 12(24):3071-3081.
33. Valanne S, Wang JH, Rämet M (2011) The Drosophila Toll signaling pathway. J Immunol 186(2):649-656.
34. Dinarello CA (1996) Biologic basis for interleukin-1 in disease. Blood 87(6):2095-2147.
35. Tourneur L, Chiocchia G (2010) FADD: A regulator of life and death. Trends Immunol 31(7):260-269.
36. Lasi M, David CN, Böttger A (2010) Apoptosis in pre-Bilaterians: Hydra as a model. Apoptosis 15(3):269-278.
37. Koyanagi R, et al. (2013) MarinegenomicsDB: An integrated genome viewer for community-based annotation of genomes. Zoolog Sci 30(10):797-800.
38. Petrache I, et al. (2003) Caspase-dependent cleavage of myosin light chain kinase (MLCK) is involved in TNF-alpha-mediated bovine pulmonary endothelial cell apoptosis. FASEB J 17(3):407-416.
39. Anderson JC, Peck SC (2008) A simple and rapid technique for detecting protein phosphorylation using one-dimensional isoelectric focusing gels and immunoblot analysis. Plant J 55(5):881-885.
40. Jovine L, Darie CC, Litscher ES, Wassarman PM (2005) Zona pellucida domain proteins. Annu Rev Biochem 74:83-114.
41. Faber BM, Chegini N, Mahony MC, Coddington CC III (2001) Macrophage secretory products and sperm zona pellucida binding. Obstet Gynecol 98(4):668-673.
42. Pernice M, et al. (2011) Regulation of apoptotic mediators reveals dynamic responses to thermal stress in the reef building coral Acropora millepora. PLoS ONE 6(1):e16095.
43. Tchernov D, et al. (2011) Apoptosis and the selective survival of host animals following thermal bleaching in zooxanthellate corals. Proc Natl Acad Sci USA 108(24): 9905-9909.
44. Portune KJ, Voolstra CR, Medina M, Szmant AM (2010) Development and heat stressinduced transcriptomic changes during embryogenesis of the scleractinian coral Acropora palmata. Mar Genomics 3(1):51-62.
45. DeSalvo MK, et al. (2010) Coral host transcriptomic states are correlated with Symbiodinium genotypes. Mol Ecol 19(6):1174-1186.
46. Reyes-Bermudez A, et al. (2009) Gene expression microarray analysis encompassing metamorphosis and the onset of calcification in the scleractinian coral Montastraea faveolata. Mar Genomics 2(3-4):149-159.
47. Ganot P, et al. (2011) Adaptations to endosymbiosis in a cnidarian-dinoflagellate association: Differential gene expression and specific gene duplications. PLoS Genet 7(7):e1002187.
48. Aranda M, et al. (2011) Differential sensitivity of coral larvae to natural levels of ultraviolet radiation during the onset of larval competence. Mol Ecol 20(14):2955-2972.
49. Barshis DJ, et al. (2013) Genomic basis for coral resilience to climate change. Proc Natl Acad Sci USA 110(4):1387-1392.
50. Cserzö M, Wallin E, Simon I, von Heijne G, Elofsson A (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method. Protein Eng 10(6):673-676.
51. Hulo N, et al. (2006) The PROSITE database. Nucleic Acids Res 34(Database issue): D227-D230.
52. Derbyshire MK, Lanczycki CJ, Bryant SH, Marchler-Bauer A (2012) Annotation of functional sites with the Conserved Domain Database. Database (Oxford) 2012: bar058.
53. Helman Y, et al. (2008) Extracellular matrix production and calcium carbonate precipitation by coral cells in vitro. Proc Natl Acad Sci USA 105(1):54-58.
54. Reyes-Bermudez A, Miller DJ (2009) In vitro culture of cells derived from larvae of the staghorn coral Acropora millepora. Coral Reefs 28(4):859-864.