Annotation of functional sites with the conserved domain database

Database

Volumn 2012, Issue , 2012, Pages

  Derbyshire, Myra K ^a   Lanczycki, Christopher J ^a   Bryant, Stephen H ^a   Marchler Bauer, Aron ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; DATA BASE; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CONSERVED SEQUENCE; DATABASE MANAGEMENT SYSTEMS; DATABASES, PROTEIN; MOLECULAR SEQUENCE ANNOTATION; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT;

EID: 84862257738     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bar058     Document Type: Article

References (13)

1. Marchler-Bauer, A., Lu, S., Anderson, J.B. et al. (2011) CDD: A Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res., 39(Database Issue), D225-D229.
2. Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A. et al. (2002) CDD: A database of conserved domain alignments with links to three-dimensional structure. Nucleic Acids Res., 30, 281-283. (Pubitemid 34679564)
3. Altschul, S.F., Madden, T.L., Schäffer, A.A. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
4. Geer, L.Y., Domrachev, M., Lipman, D.J. et al. (2002) CDART: Protein homology by domain architecture. Genome Res., 12, 1619-1623. (Pubitemid 35175101)
5. Pruitt, K.D., Tatusova, T., Klimke, W. et al. (2009) NCBI Reference Sequences: Current status, policy and new initiatives. Nucleic Acids Res., 37(Database Issue), D32-D36.
6. Shoemaker, B.A., Zhang, D., Thangudu, R.R. et al. (2010) Inferred Biomolecular Interaction Server - A web server to analyze and predict protein interacting partners and binding sites. Nucleic Acids Res., 38(Database issue), D518-D524.
7. Peterson, T.A., Aladey, A., Santana-Cruz, I. et al.Bioinformatics26, 2459-2459.
8. Magrane, M.; UniProt Consortium (2011) UniProt Knowledgebase: A hub of integrated protein data. Database, 2011, March 29 2011, doi:10.1093/database/ bar009.
9. Marchler-Bauer, A., Anderson, J.B., Cherukuri, P.F. et al. (2005) CDD: A Conserved Domain Database for protein classification. Nucleic Acids Res., 33(Database Issue), D192-D196. (Pubitemid 40207858)
10. Wang, Y., Addess, K.J., Chen, J. et al. (2007) MMDB: Annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res., 35(Database Issue), D298-D300. (Pubitemid 46056218)
11. Gibrat, J.F., Madej, T. and Bryant, S.H. (1996) Surprising similarities in structure comparison. Curr. Opin. Struct. Biol., 6, 377-385. (Pubitemid 26197439)
12. Wang, Y., Geer, L.Y., Chappey, C. et al. (2000) Cn3D: Sequence and structure views for Entrez. Trends Biochem. Sci., 25, 300-302. (Pubitemid 30333390)
13. Fong, J. and Marchler-Bauer, A. (2008) Protein subfamily assignment using the Conserved Domain Database. BMC Res. Notes, 1, 114.