-
1
-
-
0003994256
-
-
Wiley, Hoboken, New Jersey, USA
-
Tortora, G. J., and Derrickson, B. (2012) Principles of Anatomy & Physiology, Wiley, Hoboken, New Jersey, USA
-
(2012)
Principles of Anatomy & Physiology
-
-
Tortora, G.J.1
Derrickson, B.2
-
2
-
-
0035232487
-
Cooperation of liver cells in health and disease
-
III-XIII
-
Kmiec, Z. (2001) Cooperation of liver cells in health and disease. Adv. Anat. Embryol. Cell Biol. 161:III-XIII, 1-151
-
(2001)
Adv. Anat. Embryol. Cell Biol.
, vol.161
, pp. 1-151
-
-
Kmiec, Z.1
-
3
-
-
84861197159
-
Hepatocel-lular carcinoma in non-alcoholic fatty liver disease: An emerging menace
-
Baffy, G., Brunt, E. M., and Caldwell, S. H. (2012) Hepatocel-lular carcinoma in non-alcoholic fatty liver disease: an emerging menace. J. Hepatol. 56, 1384-1391
-
(2012)
J. Hepatol.
, vol.56
, pp. 1384-1391
-
-
Baffy, G.1
Brunt, E.M.2
Caldwell, S.H.3
-
4
-
-
33646893457
-
Inborn errors of metabolism: The flux from Mendelian to complex diseases
-
DOI 10.1038/nrg1880, PII N1880
-
Lanpher, B., Brunetti-Pierri, N., and Lee, B. (2006) Inborn errors of metabolism: the flux from Mendelian to complex diseases. Nat. Rev. Genet. 7, 449-460 (Pubitemid 43780488)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.6
, pp. 449-460
-
-
Lanpher, B.1
Brunetti-Pierri, N.2
Lee, B.3
-
5
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
DOI 10.1074/mcp.M500279-MCP200
-
Uhlen, M., Bjorling, E., Agaton, C., Szigyarto, C. A., Amini, B., Andersen, E., Andersson, A. C., Angelidou, P., Asplund, A., Asplund, C., Berglund, L., Bergstrom, K., Brumer, H., Cerjan, D., Ekstrom, M., Elobeid, A., Eriksson, C., Fagerberg, L., Falk, R., Fall, J., Forsberg, M., Bjorklund, M. G., Gumbel, K., Halimi, A., Hallin, I., Hamsten, C., Hansson, M., Hedhammar, M., Hercules, G., Kampf, C., Larsson, K., Lindskog, M., Lodewyckx, W., Lund, J., Lundeberg, J., Magnusson, K., Malm, E., Nilsson, P., Odling, J., Oksvold, P., Olsson, I., Oster, E., Ottosson, J., Paavilainen, L., Persson, A., Rimini, R., Rockberg, J., Runeson, M., Sivertsson, A., Skollermo, A., Steen, J., Stenvall, M., Sterky, F., Stromberg, S., Sundberg, M., Tegel, H., Tourle, S., Wahlund, E., Walden, A., Wan, J., Wernerus, H., Westberg, J., Wester, K., Wrethagen, U., Xu, L. L., Hober, S., and Ponten, F. (2005) A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol. Cell. Proteomics 4, 1920-1932 (Pubitemid 41830186)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.12
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
Szigyarto, C.A.-K.4
Amini, B.5
Andersen, E.6
Andersson, A.-C.7
Angelidou, P.8
Asplund, A.9
Asplund, C.10
Berglund, L.11
Bergstrom, K.12
Brumer, H.13
Cerjan, D.14
Ekstrom, M.15
Elobeid, A.16
Eriksson, C.17
Fagerberg, L.18
Falk, R.19
Fall, J.20
Forsberg, M.21
Bjorklund, M.G.22
Gumbel, K.23
Halimi, A.24
Hallin, I.25
Hamsten, C.26
Hansson, M.27
Hedhammar, M.28
Hercules, G.29
Kampf, C.30
Larsson, K.31
Lindskog, M.32
Lodewyckx, W.33
Lund, J.34
Lundeberg, J.35
Magnusson, K.36
Malm, E.37
Nilsson, P.38
Odling, J.39
Oksvold, P.40
Olsson, I.41
Oster, E.42
Ottosson, J.43
Paavilainen, L.44
Persson, A.45
Rimini, R.46
Rockberg, J.47
Runeson, M.48
Sivertsson, A.49
Skollermo, A.50
Steen, J.51
Stenvall, M.52
Sterky, F.53
Stromberg, S.54
Sundberg, M.55
Tegel, H.56
Tourle, S.57
Wahlund, E.58
Walden, A.59
Wan, J.60
Wernerus, H.61
Westberg, J.62
Wester, K.63
Wrethagen, U.64
Xu, L.L.65
Hober, S.66
Ponten, F.67
more..
-
6
-
-
78650034777
-
Towards a knowledge-based human protein atlas
-
Uhlen, M., Oksvold, P., Fagerberg, L., Lundberg, E., Jonasson, K., Forsberg, M., Zwahlen, M., Kampf, C., Wester, K., Hober, S., Wernerus, H., Bjorling, L., and Ponten, F. (2010) Towards a knowledge-based human protein atlas. Nat. Biotechnol. 28, 1248-1250
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
Zwahlen, M.7
Kampf, C.8
Wester, K.9
Hober, S.10
Wernerus, H.11
Bjorling, L.12
Ponten, F.13
-
7
-
-
84879327718
-
Contribution of antibody-based protein profiling to the human chromosome-centric proteome project (C-HPP)
-
Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Al-Khalili Szigyarto, C., Edqvist, P. H., Olsson, I., Rydberg, U., Hudson, P., Ottosson Takanen, J., Berling, H., Bjorling, L., Tegel, H., Rockberg, J., Nilsson, P., Navani, S., Jirstrom, K., Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K., and Uhlen, M. (2012) Contribution of antibody-based protein profiling to the human chromosome-centric proteome project (C-HPP). J. Proteome. Res. 12, 2439-2448
-
(2012)
J. Proteome. Res.
, vol.12
, pp. 2439-2448
-
-
Fagerberg, L.1
Oksvold, P.2
Skogs, M.3
Algenas, C.4
Lundberg, E.5
Ponten, F.6
Sivertsson, A.7
Odeberg, J.8
Klevebring, D.9
Kampf, C.10
Asplund, A.11
Sjostedt, E.12
Al-Khalili Szigyarto, C.13
Edqvist, P.H.14
Olsson, I.15
Rydberg, U.16
Hudson, P.17
Ottosson Takanen, J.18
Berling, H.19
Bjorling, L.20
Tegel, H.21
Rockberg, J.22
Nilsson, P.23
Navani, S.24
Jirstrom, K.25
Mulder, J.26
Schwenk, J.M.27
Zwahlen, M.28
Hober, S.29
Forsberg, M.30
Von Feilitzen, K.31
Uhlen, M.32
more..
-
8
-
-
0030895921
-
A comparison of selected mRNA and protein abundances in human liver
-
DOI 10.1002/elps.1150180333
-
Anderson, L., and Seilhamer, J. (1997) A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 18, 533-537 (Pubitemid 27174443)
-
(1997)
Electrophoresis
, vol.18
, Issue.3-4
, pp. 533-537
-
-
Anderson, L.1
Seilhamer, J.2
-
9
-
-
50649089207
-
RNA-seq: An assessment of technical reproduc-ibility and comparison with gene expression arrays
-
Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M., and Gilad, Y. (2008) RNA-seq: an assessment of technical reproduc-ibility and comparison with gene expression arrays. Genome Res. 18, 1509-1517
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
10
-
-
77955643151
-
Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification
-
Castle, J. C., Armour, C. D., Lower, M., Haynor, D., Biery, M., Bouzek, H., Chen, R., Jackson, S., Johnson, J. M., Rohl, C. A., and Raymond, C. K. (2010) Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification. Plos One 5, e11779
-
(2010)
Plos One
, vol.5
-
-
Castle, J.C.1
Armour, C.D.2
Lower, M.3
Haynor, D.4
Biery, M.5
Bouzek, H.6
Chen, R.7
Jackson, S.8
Johnson, J.M.9
Rohl, C.A.10
Raymond, C.K.11
-
11
-
-
80054771709
-
RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellu-lar carcinoma
-
Huang, Q., Lin, B., Liu, H., Ma, X., Mo, F., Yu, W., Li, L., Li, H., Tian, T., Wu, D., Shen, F., Xing, J., and Chen, Z. N. (2011) RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellu-lar carcinoma. Plos One 6, e26168
-
(2011)
Plos One
, vol.6
-
-
Huang, Q.1
Lin, B.2
Liu, H.3
Ma, X.4
Mo, F.5
Yu, W.6
Li, L.7
Li, H.8
Tian, T.9
Wu, D.10
Shen, F.11
Xing, J.12
Chen, Z.N.13
-
12
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., and Wold, B. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
13
-
-
78650642557
-
Defining the transcriptome and proteome in three functionally different human cell lines
-
Lundberg, E., Fagerberg, L., Klevebring, D., Matic, I., Geiger, T., Cox, J., Algenas, C., Lundeberg, J., Mann, M., and Uhlen, M. (2010) Defining the transcriptome and proteome in three functionally different human cell lines. Mol. Syst. Biol. 6, 450
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 450
-
-
Lundberg, E.1
Fagerberg, L.2
Klevebring, D.3
Matic, I.4
Geiger, T.5
Cox, J.6
Algenas, C.7
Lundeberg, J.8
Mann, M.9
Uhlen, M.10
-
14
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
Apweiler, R., Martin, M. J., O'Donovan, C., Magrane, M., Alam-Faruque, Y., Antunes, R., Barrell, D., Bely, B., Bingley, M., Binns, D., Bower, L., Browne, P., Chan, W. M., Dimmer, E., Eberhardt, R., Fazzini, F., Fedotov, A., Foulger, R., Garavelli, J., Castro, L. G., Huntley, R., Jacobsen, J., Kleen, M., Laiho, K., Legge, D., Lin, Q. A., Liu, W. D., Luo, J., Orchard, S., Patient, S., Pichler, K., Poggioli, D., Pontikos, N., Pruess, M., Rosanoff, S., Sawford, T., Sehra, H., Turner, E., Corbett, M., Donnelly, M., van Rensburg, P., Xenarios, I., Bougueleret, L., Auchincloss, A., Argoud-Puy, G., Axelsen, K., Bairoch, A., Baratin, D., Blatter, M. C., Boeckmann, B., Bolleman, J., Bollondi, L., Boutet, E., Quintaje, S. B., Breuza, L., Bridge, A., deCastro, E., Coudert, E., Cusin, I., Doche, M., Dornevil, D., Duvaud, S., Estreicher, A., Famiglietti, L., Feuermann, M., Gehant, S., Ferro, S., Gasteiger, E., Gateau, A., Gerritsen, V., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., Hulo, N., James, J., Jimenez, S., Jungo, F., Kappler, T., Keller, G., Lara, V., Lemereier, P., Lieberherr, D., Martin, X., Masson, P., Moinat, M., Morgat, A., Paesano, S., Pedruzzi, I., Pilbout, S., Poux, S., Pozzato, M., Redaschi, N., Rivoire, C., Roechert, B., Schneider, M., Sigrist, C., Sonesson, K., Staehli, S., Stanley, E., Stutz, A., Sundaram, S., Tognolli, M., Verbregue, L., Veuthey, A. L., Wu, C. H., Arighi, C. N., Arminski, L., Barker, W. C., Chen, C. M., Chen, Y. X., Dubey, P., Huang, H. Z., Mazumder, R., McGarvey, P., Natale, D. A., Natarajan, T. G., Nchoutmboube, J., Roberts, N. V., Suzek, B. E., Ugochukwu, U., Vinayaka, C. R., Wang, Q. H., Wang, Y. Q., Yeh, L. S., Zhang, J. A., and the UniProt Consortium (2011) Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 39, D214-D219
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Apweiler, R.1
Martin, M.J.2
O'Donovan, C.3
Magrane, M.4
Alam-Faruque, Y.5
Antunes, R.6
Barrell, D.7
Bely, B.8
Bingley, M.9
Binns, D.10
Bower, L.11
Browne, P.12
Chan, W.M.13
Dimmer, E.14
Eberhardt, R.15
Fazzini, F.16
Fedotov, A.17
Foulger, R.18
Garavelli, J.19
Castro, L.G.20
Huntley, R.21
Jacobsen, J.22
Kleen, M.23
Laiho, K.24
Legge, D.25
Lin, Q.A.26
Liu, W.D.27
Luo, J.28
Orchard, S.29
Patient, S.30
Pichler, K.31
Poggioli, D.32
Pontikos, N.33
Pruess, M.34
Rosanoff, S.35
Sawford, T.36
Sehra, H.37
Turner, E.38
Corbett, M.39
Donnelly, M.40
Van Rensburg, P.41
Xenarios, I.42
Bougueleret, L.43
Auchincloss, A.44
Argoud-Puy, G.45
Axelsen, K.46
Bairoch, A.47
Baratin, D.48
Blatter, M.C.49
Boeckmann, B.50
Bolleman, J.51
Bollondi, L.52
Boutet, E.53
Quintaje, S.B.54
Breuza, L.55
Bridge, A.56
Decastro, E.57
Coudert, E.58
Cusin, I.59
Doche, M.60
Dornevil, D.61
Duvaud, S.62
Estreicher, A.63
Famiglietti, L.64
Feuermann, M.65
Gehant, S.66
Ferro, S.67
Gasteiger, E.68
Gateau, A.69
Gerritsen, V.70
Gos, A.71
Gruaz-Gumowski, N.72
Hinz, U.73
Hulo, C.74
Hulo, N.75
James, J.76
Jimenez, S.77
Jungo, F.78
Kappler, T.79
Keller, G.80
Lara, V.81
Lemereier, P.82
Lieberherr, D.83
Martin, X.84
Masson, P.85
Moinat, M.86
Morgat, A.87
Paesano, S.88
Pedruzzi, I.89
Pilbout, S.90
Poux, S.91
Pozzato, M.92
Redaschi, N.93
Rivoire, C.94
Roechert, B.95
Schneider, M.96
Sigrist, C.97
Sonesson, K.98
Staehli, S.99
more..
-
15
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., Harris, M. A., Hill, D. P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J. C., Richardson, J. E., Ringwald, M., Rubin, G. M., and Sherlock, G. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29 (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
16
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M., and Hi-rakawa, M. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38, D355-D360
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hi-Rakawa, M.5
-
17
-
-
84898011025
-
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with nonalcoholic fatty liver disease
-
Mardinoglu, A., Agren, R., Kampf, C., Asplund, A., Uhlen, M., and Nielsen, J. (2014) Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with nonalcoholic fatty liver disease. Nat. Commun. 5, 3083
-
(2014)
Nat. Commun.
, vol.5
, pp. 3083
-
-
Mardinoglu, A.1
Agren, R.2
Kampf, C.3
Asplund, A.4
Uhlen, M.5
Nielsen, J.6
-
19
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M. J., Salzberg, S. L., Wold, B. J., and Pachter, L. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
20
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., Amode, M. R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S., Gil, L., Gordon, L., Hendrix, M., Hourlier, T., Johnson, N., Kahari, A. K., Keefe, D., Keenan, S., Kinsella, R., Komorowska, M., Koscielny, G., Kulesha, E., Larsson, P., Longden, I., McLaren, W., Muffato, M., Overduin, B., Pignatelli, M., Pritchard, B., Riat, H. S., Ritchie, G. R., Ruffier, M., Schuster, M., Sobral, D., Tang, Y. A., Taylor, K., Trevanion, S., Vandrovcova, J., White, S., Wilson, M., Wilder, S. P., Aken, B. L., Birney, E., Cunningham, F., Dunham, I., Durbin, R., Fernandez-Suarez, X. M., Harrow, J., Herrero, J., Hubbard, T. J., Parker, A., Proctor, G., Spudich, G., Vogel, J., Yates, A., Zadissa, A., and Searle, S. M. (2012) Ensembl 2012. Nucleic Acids Res. 40, D84-90
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gil, L.11
Gordon, L.12
Hendrix, M.13
Hourlier, T.14
Johnson, N.15
Kahari, A.K.16
Keefe, D.17
Keenan, S.18
Kinsella, R.19
Komorowska, M.20
Koscielny, G.21
Kulesha, E.22
Larsson, P.23
Longden, I.24
McLaren, W.25
Muffato, M.26
Overduin, B.27
Pignatelli, M.28
Pritchard, B.29
Riat, H.S.30
Ritchie, G.R.31
Ruffier, M.32
Schuster, M.33
Sobral, D.34
Tang, Y.A.35
Taylor, K.36
Trevanion, S.37
Vandrovcova, J.38
White, S.39
Wilson, M.40
Wilder, S.P.41
Aken, B.L.42
Birney, E.43
Cunningham, F.44
Dunham, I.45
Durbin, R.46
Fernandez-Suarez, X.M.47
Harrow, J.48
Herrero, J.49
Hubbard, T.J.50
Parker, A.51
Proctor, G.52
Spudich, G.53
Vogel, J.54
Yates, A.55
Zadissa, A.56
Searle, S.M.57
more..
-
21
-
-
84863304598
-
-
R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team (2013) R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
-
22
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
23
-
-
84863744150
-
Production of tissue microarrays, immunohistochemistry staining and digitalization within the human protein atlas
-
Kampf, C., Olsson, I., Ryberg, U., Sjöstedt, E., and Pontén, F. (2012) Production of tissue microarrays, immunohistochemistry staining and digitalization within the human protein atlas. J. Visual. Exper. 63, e3620
-
(2012)
J. Visual. Exper.
, vol.63
-
-
Kampf, C.1
Olsson, I.2
Ryberg, U.3
Sjöstedt, E.4
Pontén, F.5
-
24
-
-
24644451489
-
Antibody-based tissue profiling as a tool for clinical proteomics
-
DOI 10.1385/CP:1:3-4:285
-
Kampf, C., Andersson, A. C., Wester, K., Björling, E., Uhlén, M., and Pontén, F. (2004) Antibody-based tissue profiling as a tool for clinical proteomics. Clin. Proteomics 1, 285-299 (Pubitemid 41271299)
-
(2004)
Clinical Proteomics
, vol.1
, Issue.3-4
, pp. 285-299
-
-
Kampf, C.1
Andersson, A.-C.2
Wester, K.3
Bjorling, E.4
Uhlen, M.5
Ponten, F.6
-
25
-
-
84863662483
-
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
-
Agren, R., Bordel, S., Mardinoglu, A., Pornputtapong, N., Nookaew, I., and Nielsen, J. (2012) Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. Plos Comput. Biol. 8, e1002518
-
(2012)
Plos Comput. Biol.
, vol.8
-
-
Agren, R.1
Bordel, S.2
Mardinoglu, A.3
Pornputtapong, N.4
Nookaew, I.5
Nielsen, J.6
-
26
-
-
84883787394
-
Integration of clinical data with a genome-scale metabolic model of the human adipocyte
-
Mardinoglu, A., Agren, R., Kampf, C., Asplund, A., Nookaew, I., Jacobson, P., Walley, A. J., Froguel, P., Carlsson, L. M., Uhlen, M., and Nielsen, J. (2013) Integration of clinical data with a genome-scale metabolic model of the human adipocyte. Mol. Syst. Biol. 9, 649
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 649
-
-
Mardinoglu, A.1
Agren, R.2
Kampf, C.3
Asplund, A.4
Nookaew, I.5
Jacobson, P.6
Walley, A.J.7
Froguel, P.8
Carlsson, L.M.9
Uhlen, M.10
Nielsen, J.11
-
27
-
-
84898663879
-
Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling
-
Agren, R., Mardinoglu, A., Asplund, A., Kampf, C., Uhlen, M., and Nielsen, J. (2014) Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling. Mol. Syst. Biol. 10, 721
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 721
-
-
Agren, R.1
Mardinoglu, A.2
Asplund, A.3
Kampf, C.4
Uhlen, M.5
Nielsen, J.6
-
28
-
-
84893276590
-
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics
-
Fagerberg, L., Hallstrom, B. M., Oksvold, P., Kampf, C., Djure-inovic, D., Odeberg, J., Habuka, M., Tahmasebpoor, S., Dan-ielsson, A., Edlund, K., Asplund, A., Sjostedt, E., Lundberg, E., Szigyarto, C. A., Skogs, M., Takanen, J. O., Berling, H., Tegel, H., Mulder, J., Nilsson, P., Schwenk, J. M., Lindskog, C., Danielsson, F., Mardinoglu, A., Sivertsson, A., von Feilitzen, K., Forsberg, M., Zwahlen, M., Olsson, I., Navani, S., Huss, M., Nielsen, J., Ponten, F., and Uhlen, M. (2014) Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Mol. Cell. Pro-teomics 13, 397-406
-
(2014)
Mol. Cell. Pro-teomics
, vol.13
, pp. 397-406
-
-
Fagerberg, L.1
Hallstrom, B.M.2
Oksvold, P.3
Kampf, C.4
Djure-Inovic, D.5
Odeberg, J.6
Habuka, M.7
Tahmasebpoor, S.8
Dan-Ielsson, A.9
Edlund, K.10
Asplund, A.11
Sjostedt, E.12
Lundberg, E.13
Szigyarto, C.A.14
Skogs, M.15
Takanen, J.O.16
Berling, H.17
Tegel, H.18
Mulder, J.19
Nilsson, P.20
Schwenk, J.M.21
Lindskog, C.22
Danielsson, F.23
Mardinoglu, A.24
Sivertsson, A.25
Von Feilitzen, K.26
Forsberg, M.27
Zwahlen, M.28
Olsson, I.29
Navani, S.30
Huss, M.31
Nielsen, J.32
Ponten, F.33
Uhlen, M.34
more..
-
29
-
-
79958724665
-
RNA sequencing reveals two major classes of gene expression levels in metazoan cells
-
Hebenstreit, D., Fang, M., Gu, M., Charoensawan, V., van Oudenaarden, A., and Teichmann, S. A. (2011) RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Mol. Syst. Biol. 7, 497
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 497
-
-
Hebenstreit, D.1
Fang, M.2
Gu, M.3
Charoensawan, V.4
Van Oudenaarden, A.5
Teichmann, S.A.6
-
30
-
-
77952796368
-
TiSGeD: A database for tissue-specific genes
-
Xiao, S. J., Zhang, C., Zou, Q., and Ji, Z. L. (2010) TiSGeD: a database for tissue-specific genes. Bioinformatics 26, 1273-1275
-
(2010)
Bioinformatics
, vol.26
, pp. 1273-1275
-
-
Xiao, S.J.1
Zhang, C.2
Zou, Q.3
Ji, Z.L.4
-
31
-
-
78449277726
-
Creation of an antibody-based subcellular protein atlas
-
Lundberg, E., and Uhlen, M. (2010) Creation of an antibody-based subcellular protein atlas. Proteomics 10, 3984-3996
-
(2010)
Proteomics
, vol.10
, pp. 3984-3996
-
-
Lundberg, E.1
Uhlen, M.2
-
32
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. W., Sherman, B. T., and Lempicki, R. A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
33
-
-
0029093496
-
Coex-pression of liver-specific and growth-induced genes in perinatal and regenerating liver: Attainment and maintenance of the differentiated state during rapid proliferation
-
Haber, B., Naji, L., Cressman, D., and Taub, R. (1995) Coex-pression of liver-specific and growth-induced genes in perinatal and regenerating liver: attainment and maintenance of the differentiated state during rapid proliferation. Hepatology 22, 906-914
-
(1995)
Hepatology
, vol.22
, pp. 906-914
-
-
Haber, B.1
Naji, L.2
Cressman, D.3
Taub, R.4
-
34
-
-
84855955467
-
Systems medicine and metabolic modelling
-
Mardinoglu, A., and Nielsen, J. (2012) Systems medicine and metabolic modelling. J. Intern. Med. 271, 142-154
-
(2012)
J. Intern. Med.
, vol.271
, pp. 142-154
-
-
Mardinoglu, A.1
Nielsen, J.2
-
35
-
-
84883384697
-
Genome-scale modeling of human metabolism-a systems biology approach
-
Mardinoglu, A., Gatto, F., and Nielsen, J. (2013) Genome-scale modeling of human metabolism-a systems biology approach. Biotechnol. J. 8, 985-996
-
(2013)
Biotechnol. J.
, vol.8
, pp. 985-996
-
-
Mardinoglu, A.1
Gatto, F.2
Nielsen, J.3
-
36
-
-
0021972022
-
Functional hepatocyte heterogeneity in ammonia metabolism. The intercellular glutamine cycle
-
DOI 10.1016/S0168-8278(85)80063-5
-
Haussinger, D., Sies, H., and Gerok, W. (1985) Functional hepatocyte heterogeneity in ammonia metabolism. The intercellular glutamine cycle. J. Hepatol. 1, 3-14 (Pubitemid 15196334)
-
(1985)
Journal of Hepatology
, vol.1
, Issue.1
, pp. 3-14
-
-
Haussinger, D.1
Sies, H.2
Gerok, W.3
-
37
-
-
0021940398
-
Elevated plasma ammonia level in hepatic cirrhosis: Role of glucagon
-
Kabadi, U. M., Eisenstein, A. B., and Konda, J. (1985) Elevated plasma ammonia level in hepatic cirrhosis: role of glucagon. Gastroenterology 88, 750-756 (Pubitemid 15130664)
-
(1985)
Gastroenterology
, vol.88
, Issue.3
, pp. 750-756
-
-
Kabadi, U.M.1
Eisenstein, A.B.2
Konda, J.3
-
38
-
-
79951792246
-
Plasma metabolomic profile in nonalcoholic fatty liver disease
-
Kalhan, S. C., Guo, L. N., Edmison, J., Dasarathy, S., Mc-Cullough, A. J., Hanson, R. W., and Milburn, M. (2011) Plasma metabolomic profile in nonalcoholic fatty liver disease. Metabolism 60, 404-413
-
(2011)
Metabolism
, vol.60
, pp. 404-413
-
-
Kalhan, S.C.1
Guo, L.N.2
Edmison, J.3
Dasarathy, S.4
Mc-Cullough, A.J.5
Hanson, R.W.6
Milburn, M.7
-
39
-
-
84872969916
-
Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data
-
Teng, S. L., Yang, J. Y., and Wang, L. J. (2013) Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data. BMC Med. Genomics 6, S10
-
(2013)
BMC Med. Genomics
, vol.6
-
-
Teng, S.L.1
Yang, J.Y.2
Wang, L.J.3
-
40
-
-
79955780589
-
VeryGene: Linking tissue-specific genes to diseases, drugs, and beyond for knowledge discovery
-
Yang, X. Q., Ye, Y., Wang, G. P., Huang, H., Yu, D. K., and Liang, S. (2011) VeryGene: linking tissue-specific genes to diseases, drugs, and beyond for knowledge discovery. Physiol. Genomics 43, 457-460
-
(2011)
Physiol. Genomics
, vol.43
, pp. 457-460
-
-
Yang, X.Q.1
Ye, Y.2
Wang, G.P.3
Huang, H.4
Yu, D.K.5
Liang, S.6
-
41
-
-
80053162318
-
Analysis of global and absorption, distribution, metabolism, and elimination gene expression in the progressive stages of human nonalcoholic fatty liver disease
-
Lake, A. D., Novak, P., Fisher, C. D., Jackson, J. P., Hardwick, R. N., Billheimer, D. D., Klimecki, W. T., and Cherrington, N. J. (2011) Analysis of global and absorption, distribution, metabolism, and elimination gene expression in the progressive stages of human nonalcoholic fatty liver disease. Drug Metab. Dispos. 39, 1954-1960
-
(2011)
Drug Metab. Dispos.
, vol.39
, pp. 1954-1960
-
-
Lake, A.D.1
Novak, P.2
Fisher, C.D.3
Jackson, J.P.4
Hardwick, R.N.5
Billheimer, D.D.6
Klimecki, W.T.7
Cherrington, N.J.8
-
42
-
-
80053997262
-
Clinicopathological and prognostic significance of serum and tissue Dickkopf-1 levels in human hepato-cellular carcinoma
-
Tung, E. K., Mak, C. K., Fatima, S., Lo, R. C., Zhao, H., Zhang, C., Dai, H., Poon, R. T., Yuen, M. F., Lai, C. L., Li, J. J., Luk, J. M., and Ng, I. O. (2011) Clinicopathological and prognostic significance of serum and tissue Dickkopf-1 levels in human hepato-cellular carcinoma. Liver Int. 31, 1494-1504
-
(2011)
Liver Int.
, vol.31
, pp. 1494-1504
-
-
Tung, E.K.1
Mak, C.K.2
Fatima, S.3
Lo, R.C.4
Zhao, H.5
Zhang, C.6
Dai, H.7
Poon, R.T.8
Yuen, M.F.9
Lai, C.L.10
Li, J.J.11
Luk, J.M.12
Ng, I.O.13
-
43
-
-
84877309040
-
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
-
Väremo, L., Nielsen, J., and Nookaew, I. (2013) Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. 4, 4378-4391
-
(2013)
Nucleic Acids Res.
, vol.4
, pp. 4378-4391
-
-
Väremo, L.1
Nielsen, J.2
Nookaew, I.3
-
44
-
-
78449301931
-
Serum fetuin A/alpha2HS-glycoprotein levels in patients with non-alcoholic fatty liver disease: Relation with liver fibrosis
-
Yilmaz, Y., Yonal, O., Kurt, R., Ari, F., Oral, A. Y., Celikel, C. A., Korkmaz, S., Ulukaya, E., Ozdogan, O., Imeryuz, N., Avsar, E., and Kalayci, C. (2010) Serum fetuin A/alpha2HS-glycoprotein levels in patients with non-alcoholic fatty liver disease: relation with liver fibrosis. Ann. Clin. Biochem. 47, 549-553
-
(2010)
Ann. Clin. Biochem.
, vol.47
, pp. 549-553
-
-
Yilmaz, Y.1
Yonal, O.2
Kurt, R.3
Ari, F.4
Oral, A.Y.5
Celikel, C.A.6
Korkmaz, S.7
Ulukaya, E.8
Ozdogan, O.9
Imeryuz, N.10
Avsar, E.11
Kalayci, C.12
-
45
-
-
73449090429
-
Serum proteomics and biomarker discovery across the spectrum of nonalcoholic fatty liver disease
-
Bell, L. N., Theodorakis, J. L., Vuppalanchi, R., Saxena, R., Bemis, K. G., Wang, M., and Chalasani, N. (2010) Serum proteomics and biomarker discovery across the spectrum of nonalcoholic fatty liver disease. Hepatology 51, 111-120
-
(2010)
Hepatology
, vol.51
, pp. 111-120
-
-
Bell, L.N.1
Theodorakis, J.L.2
Vuppalanchi, R.3
Saxena, R.4
Bemis, K.G.5
Wang, M.6
Chalasani, N.7
-
46
-
-
64949097327
-
Latest findings in phosphate homeostasis
-
Prie, D., Urena Torres, P., and Friedlander, G. (2009) Latest findings in phosphate homeostasis. Kidney Int. 75, 882-889
-
(2009)
Kidney Int.
, vol.75
, pp. 882-889
-
-
Prie, D.1
Urena Torres, P.2
Friedlander, G.3
-
47
-
-
84879335593
-
Plasma fibroblast growth factor 23 concentration is increased and predicts mortality in patients on the liver-transplant waiting list
-
Prie, D., Forand, A., Francoz, C., Elie, C., Cohen, I., Courbe-baisse, M., Eladari, D., Lebrec, D., Durand, F., and Friedlander, G. (2013) Plasma fibroblast growth factor 23 concentration is increased and predicts mortality in patients on the liver-transplant waiting list. Plos One 8, e66182
-
(2013)
Plos One
, vol.8
-
-
Prie, D.1
Forand, A.2
Francoz, C.3
Elie, C.4
Cohen, I.5
Courbe-Baisse, M.6
Eladari, D.7
Lebrec, D.8
Durand, F.9
Friedlander, G.10
-
48
-
-
0037068964
-
Clinical importance of the cytochromes P450
-
DOI 10.1016/S0140-6736(02)11203-7
-
Nebert, D. W., and Russell, D. W. (2002) Clinical importance of the cytochromes P450. Lancet 360, 1155-1162 (Pubitemid 35246494)
-
(2002)
Lancet
, vol.360
, Issue.9340
, pp. 1155-1162
-
-
Nebert, D.W.1
Russell, D.W.2
-
49
-
-
0035976638
-
Nuclear receptors and lipid physiology: Opening the x-files
-
DOI 10.1126/science.294.5548.1866
-
Chawla, A., Repa, J. J., Evans, R. M., and Mangelsdorf, D. J. (2001) Nuclear receptors and lipid physiology: opening the X-files. Science 294, 1866-1870 (Pubitemid 33101573)
-
(2001)
Science
, vol.294
, Issue.5548
, pp. 1866-1870
-
-
Chawta, A.1
Repa, J.J.2
Evans, R.M.3
Mangelsdorf, D.J.4
-
50
-
-
80051806849
-
Expression of SLCO1B3 is associated with intratumoral cholestasis and CTNNB1 mutations in hepatocellular carcinoma
-
Sekine, S., Ogawa, R., Ojima, H., and Kanai, Y. (2011) Expression of SLCO1B3 is associated with intratumoral cholestasis and CTNNB1 mutations in hepatocellular carcinoma. Cancer Sci. 102, 1742-1747
-
(2011)
Cancer Sci.
, vol.102
, pp. 1742-1747
-
-
Sekine, S.1
Ogawa, R.2
Ojima, H.3
Kanai, Y.4
-
51
-
-
84874083742
-
Molecular prognostic profile of Egyptian HCC cases infected with hepatitis C virus
-
Zekri, A. R., Hassan, Z. K., Bahnassy, A. A., Sherif, G. M., D, E. L., Abouelhoda, M., Ali, A., and Hafez, M. M. (2012) Molecular prognostic profile of Egyptian HCC cases infected with hepatitis C virus. Asian Pac. J. Cancer Prev. 13, 5433-5438
-
(2012)
Asian Pac. J. Cancer Prev.
, vol.13
, pp. 5433-5438
-
-
Zekri, A.R.1
Hassan, Z.K.2
Bahnassy, A.A.3
Sherif, G.M.D.E.L.4
Abouelhoda, M.5
Ali, A.6
Hafez, M.M.7
-
52
-
-
78349277671
-
Evidence of aberrant lipid metabolism in hepatitis C and hepatocellu-lar carcinoma
-
Wu, J. M., Skill, N. J., and Maluccio, M. A. (2010) Evidence of aberrant lipid metabolism in hepatitis C and hepatocellu-lar carcinoma. HPB (Oxford) 12, 625-636
-
(2010)
HPB (Oxford)
, vol.12
, pp. 625-636
-
-
Wu, J.M.1
Skill, N.J.2
Maluccio, M.A.3
|