Normalized polarization ratios for the analysis of cell polarity

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Shimoni, Raz ^a,c   Pham, Kim ^a,c   Yassin, Mohammed ^b,c   Ludford Menting, Mandy J ^b,c   Gu, Min ^a   Russell, Sarah M ^a,b,c  

^a SWINBURNE UNIVERSITY OF TECHNOLOGY   (Australia)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c PETER MACCALLUM CANCER CENTRE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ENHANCED GREEN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN;

ACCURACY; ANALYTICAL PARAMETERS; ANIMAL CELL; ARTICLE; ARTIFACT; CELL POLARITY; CLUSTER ANALYSIS; COMPUTER SIMULATION; CONTROLLED STUDY; FLUORESCENCE ANALYSIS; IMAGE QUALITY; MEASUREMENT; NONHUMAN; POLARIZATION; PROCEDURES CONCERNING CELLS; PROTEIN EXPRESSION; VALIDITY; ALGORITHM; CELL CULTURE; CYTOLOGY; FLUORESCENCE; FLUORESCENCE MICROSCOPY; HUMAN; IMAGE PROCESSING; METABOLISM; PROCEDURES; T LYMPHOCYTE; TIME LAPSE IMAGING;

ALGORITHMS; CELL POLARITY; CELLS, CULTURED; COMPUTER SIMULATION; FLUORESCENCE; GREEN FLUORESCENT PROTEINS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE; T-LYMPHOCYTES; TIME-LAPSE IMAGING;

EID: 84903514108     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0099885     Document Type: Article

References (41)

1. Russell S (2008) How polarity shapes the destiny of T cells. J Cell Sci 121: 131-136.
2. Martin-Belmonte F, Perez-Moreno M (2012) Epithelial cell polarity, stem cells and cancer. Nat Rev Cancer 12: 23-38.
3. St Johnston D, Ahringer J (2010) Cell polarity in eggs and epithelia: parallels and diversity. Cell 141: 757-774.
4. Roybal KT, Sinai P, Verkade P, Murphy RF, Wulfing C (2013) The actin-driven spatiotemporal organization of T-cell signaling at the system scale. Immunol Rev 256: 133-147.
5. Morrison SJ, Kimble J (2006) Asymmetric and symmetric stem-cell divisions in development and cancer. Nature 441: 1068-1074. (Pubitemid 43990718)
6. Knoblich JA (2010) Asymmetric cell division: recent developments and their implications for tumour biology. Nat Rev Mol Cell Biol 11: 849-860.
7. Chang JT, Palanivel VR, Kinjyo I, Schambach F, Intlekofer AM, et al. (2007) Asymmetric T lymphocyte division in the initiation of adaptive immune responses. Science 315: 1687-1691. (Pubitemid 46515618)
8. Oliaro J, Van Ham V, Sacirbegovic F, Pasam A, Bomzon Z, et al. (2010) Asymmetric cell division of T cells upon antigen presentation uses multiple conserved mechanisms. J Immunol 185: 367-375.
9. Chang JT, Ciocca ML, Kinjyo I, Palanivel VR, McClurkin CE, et al. (2011) Asymmetric proteasome segregation as a mechanism for unequal partitioning of the transcription factor T-bet during T lymphocyte division. Immunity 34: 492-504.
10. Hawkins ED, Oliaro J, Kallies A, Belz GT, Filby A, et al. (2013) Regulation of asymmetric cell division and polarity by Scribble is not required for humoral immunity. Nat Commun 4: 1801.
11. Restifo NP, Gattinoni L (2013) Lineage relationship of effector and memory T cells. Curr Opin Immunol.
12. Pham K, Sacirbegovic F, Russell SM (2014) Polarized Cells, Polarized Views: Asymmetric Cell Division in Hematopoietic Cells. Front Immunol 5: 26.
13. Filby A, Perucha E, Summers H, Rees P, Chana P, et al. (2011) An imaging flow cytometric method for measuring cell division history and molecular symmetry during mitosis. Cytometry A 79: 496-506.
14. Melichar HJ, Li O, Herzmark P, Padmanabhan RK, Oliaro J, et al. (2011) Quantifying subcellular distribution of fluorescent fusion proteins in cells migrating within tissues. Immunol Cell Biol 89: 549-557.
15. Skamagki M, Wicher KB, Jedrusik A, Ganguly S, Zernicka-Goetz M (2013) Asymmetric Localization of Cdx2 mRNA during the First Cell-Fate Decision in Early Mouse Development. Cell Rep 3: 442-457.
16. Habib SJ, Chen BC, Tsai FC, Anastassiadis K, Meyer T, et al. (2013) A localized Wnt signal orients asymmetric stem cell division in vitro. Science 339: 1445-1448.
17. Dalton CM, Carroll J (2013) Biased inheritance of mitochondria during asymmetric cell division in the mouse oocyte. J Cell Sci 126: 2955-2964.
18. Yan Y, Lai ZW, Goode RJ, Cui J, Bacic T, et al. (2013) Particles on the move: intracellular trafficking and asymmetric mitotic partitioning of nanoporous polymer particles. ACS Nano 7: 5558-5567.
19. Frigault MM, Lacoste J, Swift JL, Brown CM (2009) Live-cell microscopy - tips and tools. J Cell Sci 122: 753-767.
20. Waters JC (2009) Accuracy and precision in quantitative fluorescence microscopy. J Cell Biol 185: 1135-1148.
21. Pawley JB (2006) Handbook of biological confocal microscopy. New York, NY: Springer. xxviii, 985 p. p.
22. Wu M, Kwon HY, Rattis F, Blum J, Zhao C, et al. (2007) Imaging hematopoietic precursor division in real time. Cell Stem Cell 1: 541-554. (Pubitemid 350056405)
23. Pham K, Shimoni R, Ludford-Menting MJ, Nowell CJ, Lobachevsky P, et al. (2013) Divergent lymphocyte signalling revealed by a powerful new tool for analysis of time-lapse microscopy. Immunol Cell Biol 91: 70-81.
24. Yang YH, Buckley MJ, Speed TP (2001) Analysis of cDNA microarray images. Brief Bioinform 2: 341-349.
25. Quackenbush J (2002) Microarray data normalization and transformation. Nat Genet 32 Suppl: 496-501.
26. Dunn KW, Kamocka MM, McDonald JH (2011) A practical guide to evaluating colocalization in biological microscopy. Am J Physiol Cell Physiol 300: C723-742.
27. Villalta JI, Galli S, Iacaruso MF, Antico Arciuch VG, Poderoso JJ, et al. (2011) New algorithm to determine true colocalization in combination with image restoration and time-lapse confocal microscopy to MAP kinases in mitochondria. PLoS One 6: e19031.
28. Pang Z, Laplante NE, Filkins RJ (2012) Dark pixel intensity determination and its applications in normalizing different exposure time and autofluorescence removal. J Microsc 246: 1-10.
29. Ramsbottom KM, Hawkins ED, Shimoni R, McGrath M, Chan CJ, et al. (2014) Cutting Edge: DNAX Accessory Molecule 1-Deficient CD8+ T Cells Display Immunological Synapse Defects That Impair Antitumor Immunity. J Immunol 192: 553-557.
30. King CG, Koehli S, Hausmann B, Schmaler M, Zehn D, et al. (2012) T cell affinity regulates asymmetric division, effector cell differentiation, and tissue pathology. Immunity 37: 709-720.
31. Couturier L, Mazouni K, Schweisguth F (2013) Numb localizes at endosomes and controls the endosomal sorting of notch after asymmetric division in Drosophila. Curr Biol 23: 588-593.
32. Ting SB, Deneault E, Hope K, Cellot S, Chagraoui J, et al. (2012) Asymmetric segregation and self-renewal of hematopoietic stem and progenitor cells with endocytic Ap2a2. Blood 119: 2510-2522.
33. Huh D, Paulsson J (2011) Random partitioning of molecules at cell division. Proc Natl Acad Sci U S A 108: 15004-15009.
34. Shimoni R, Pham K, Yassin M, Gu M, Russell SM (2013) TACTICS, an interactive platform for customized high-content bioimaging analysis. Bioinformatics 29: 817-818.
35. Moreau HD, Lemaitre F, Terriac E, Azar G, Piel M, et al. (2012) Dynamic In Situ Cytometry Uncovers T Cell Receptor Signaling during Immunological Synapses and Kinapses In Vivo. Immunity.
36. Summers HD, Rees P, Holton MD, Brown MR, Chappell SC, et al. (2011) Statistical analysis of nanoparticle dosing in a dynamic cellular system. Nat Nanotechnol 6: 170-174.
37. Rujano MA, Bosveld F, Salomons FA, Dijk F, van Waarde MA, et al. (2006) Polarised asymmetric inheritance of accumulated protein damage in higher eukaryotes. PLoS Biol 4: e417.
38. Lehmussola A, Ruusuvuori P, Selinummi J, Huttunen H, Yli-Harja O (2007) Computational framework for simulating fluorescence microscope images with cell populations. IEEE Trans Med Imaging 26: 1010-1016. (Pubitemid 47147248)
39. Day D, Pham K, Ludford-Menting MJ, Oliaro J, Izon D, et al. (2009) A method for prolonged imaging of motile lymphocytes. Immunol Cell Biol 87: 154-158.
40. Bresenham JE (1965) Algorithm for computer control of a digital plotter. IBM Systems journal 4: 25-30.
41. Guberman JM, Fay A, Dworkin J, Wingreen NS, Gitai Z (2008) PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution. PLoS Comput Biol 4: e1000233.